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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058514 ID=TCONS_00058514|Name=TCONS_00058514|organism=Clytia hemisphaerica|type=transcript|length=4535bpRun BLAST on NCBI protein sequence of TCONS_00058514-protein >TCONS_00058514-protein ID=TCONS_00058514-protein|Name=TCONS_00058514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp KTTTIMAASNMTAKNESEKMDVKRKNSKIIKLKKDSVSESDEESEDDFFDRun BLAST on NCBI transcript from alignment at scaffold_311:163918..210354- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058514 ID=TCONS_00058514|Name=TCONS_00058514|organism=Clytia hemisphaerica|type=transcript|length=46437bp|location=Sequence derived from alignment at scaffold_311:163918..210354- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:163918..210354- >TCONS_00058514 ID=TCONS_00058514|Name=TCONS_00058514|organism=Clytia hemisphaerica|type=CDS|length=16962bp|location=Sequence derived from alignment at scaffold_311:163918..210354- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058514 vs. Swiss-Prot (Human)
Match: ATG4D (Cysteine protease ATG4D OS=Homo sapiens GN=ATG4D PE=1 SV=1) HSP 1 Score: 318.931 bits (816), Expect = 1.294e-95 Identity = 176/421 (41.81%), Postives = 232/421 (55.11%), Query Frame = 1
Query: 154 EKIKKKFMSAWMNVKYGFNVQISKPSFNDQNPVWLLGRCYHIKNTDTEDDGRVVKDEHKVLSLDQFFEDFSSLVWLTYRKKFETLAKSNLTSDGGWGCMLRSGQMLLANAILIHMLREGW-------------------------------RTSQRATSYEKNYIYRMIVRFFNDEDSDHSPFSLHELVRVGEASGKKPGDWYGPNSVAHTISHTVNNTSHPTLETLRVYVAQDCTVYKEDVIKACTRCKNCFNPACQDKFWRSLLXACTHCKNCFNPACQDKFWRSLLILVPVRLGSESLNPIYIPCLKALLALDCCVGIIGGRPKHSLYFVGFQGDKLIHLDPHYLQDKVDMSTRDFPVDSFHCQYPKKMSFEKMDPSCAIGFYCRTRADFENFCQEAKQVSPPPKQRIEYPMFIFDEG 1323
+K K KF++AW NVKYG+ V+ S+ SF+ + + L GR Y + E D + +F DF S +WLTYR+ F L LTSD GWGCMLRSGQM+LA +L+H L W R +Q A E+ +R IV +F D +PF LH LV +G++SGKK GDWYGP+ VAH + V + S T L VYV+QDCTVYK DV + R +P + W+S++ILVPVRLG E+LNP+Y+PC+K LL + C+GI+GG+P+HSLYF+G+Q D L++LDPHY Q VD+S DFP++SFHC P+KM+F KMDPSC +GFY R +FE C E +V YPMF EG
Sbjct: 63 DKFKAKFLTAWNNVKYGWVVK-SRTSFSKISSIHLCGRRYRFEG---EGD------------IQRFQRDFVSRLWLTYRRDFPPLPGGCLTSDCGWGCMLRSGQMMLAQGLLLHFLPRDWTWAEGMGLGPPELSGSASPSRYHGPARWMPPRWAQGAPELEQERRHRQIVSWFADHP--RAPFGLHRLVELGQSSGKKAGDWYGPSLVAHILRKAVESCSDVT--RLVVYVSQDCTVYKADVARLVARP----DPTAE--------------------------WKSVVILVPVRLGGETLNPVYVPCVKELLRCELCLGIMGGKPRHSLYFIGYQDDFLLYLDPHYCQPTVDVSQADFPLESFHCTSPRKMAFAKMDPSCTVGFYAGDRKEFETLCSELTRVLSSSSATERYPMFTLAEG 433 The following BLAST results are available for this feature:
BLAST of TCONS_00058514 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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