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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058511 ID=TCONS_00058511|Name=TCONS_00058511|organism=Clytia hemisphaerica|type=transcript|length=2060bp
gcGTAATATCGGAAATGGCATGGAAAGGAGCAAAATGAGGCATGAGAGGT
AGAGAGCGAGTGATTGCGAATAAATAAATAACTATGGTATGGTGGTCAGA
ACGAAGAAAAACTTATTTGCTTCTTACACGTGCATGGTGTGCTTGCATAA
TTTCTACACCAAGCCCCACTAATGAGGAGAAGGGCTACCTCTGCTTTTTC
AGGAAGGAGATTGGATAGTTCTGTTTGTGACATCACAACAATAGAGTTGC
GATTGTTGAGTGAATCGATGACGTTTTTGTAAcgaaaaaatgaattaaaa
cttccttcaaaattgtttcaatctcaaaaagtgataaaatccAAAAGCAA
AAgtaacaaagaaaagaaaagacgaGTTGAAAAGAAGAACCACCCCACAT
TCCGCCCTTCCGGATCGATTGTAAAAGCAAACACTATCTGTGAAATAAAA
TTAAGTTTATCACGAGAAAATAAGGGAAGGCGTTTTCACGCGAAAGTTAA
tattaaattcaattttgttCTTGATTCGAAACATTCTACTTTTGCTTGAG
AAGCTTAAAGTGCACATCAAGGATAAACTtcacaaatcaaaaaagaaatt
aaaatcaaaGTGGAAATtcagaaaatgacaaaaagcgGGATGCTGTATCT
TTGCTTTTTCAtggcttttgttttgttttgtcgaTGTAGAGTGTCGGAGa
aaaaatcttttgtggcTTTATCAAGGCTACGACGAGACACGTGTGAAAGT
TTCAGATGTTCATTGGGTTCATTACAATGCTCAAGCAGTACATTCTGTCA
AAGATGTTGTCAAAACTNTAACTTGGTGTGTGCTACCAACAACAGAGGAA
TTAATGTCTGCAGTGATAGTCGTGATCCGCAATAAAAAATGGGACGACAT
GGAGTTTTTGCAAGCTctcatttgatttggttggtcgtcaaccagtaata
aaacaatttaattactttttctaaagaacgcatcatttttattacttcaa
atgaccaattattaaagtatcttataaaaacttcatctCCTCTGTAAAAA
ACTGTGTAAACTATCGAATTATATGTTTGGTGCATAAAAAACAATCGGCC
TGTCGTAAAAAAAGGTTGGTGCCCCCTTAACAATGGGCCTATAGATATAA
TTGTAAATCTTagataggccttttcataaattattttgagtgaaaagact
gcctcgttttgaaaccatcgAAATTATCACCAACAAAGGTGATCAAATAG
CCTGAATATTAAAGTGTTTACTTTAATAAATGGAGAATACTTCTTATGAA
CTCCTCTAGGAATCAATAACCACATCAGTAGTTTGAAAACGAGGAAAGCG
TTGCTCTTgtcgtaatttatgaaaaggtctattgaaaataAACGTTTTCA
GAGATTTTACCTACATTTATTGACATAGGAAATGTATCTAGTTCTAAGTC
ATATTGTATAATAATTGTGTCGAAAAACTAAAATCAAAACCCTACAAAGG
CCTGTCAAACTAATTTCATTTCGAGTTCTCATAcaccaatttttttaata
agcaacccCAATTTTCGGCTCCCTTTCTGAGAAATTTGCTTTGACTAACC
CTGATTTCATTCCATATTTATGCTTGTTGGGTCATGGGCTACCGTTTGTC
ATTGTTAgattatctttaaaaaaactttaactttAGGAGATAAGGTATAA
GGTATTTAGTATAAGGTCAAGgcttagcaacctggttgcttataaagaaa
aagctattactttaatgggataaacttttgcggggattaaatttcgcgga
tttcgcggatttgggtgtcatccgcgagaatccgcgaaattaaataccaA
TGGAAATTTTGAAGGGCTCGAAATGGGGTTAGTTGTTCCTCTTCTTGCTC
TGATTTTCAAGTGTTTCAAAAAAGTAGAAATATTGTTCAAATGATATACC
CGATGAACAACAATCTTCTCCCTCTCGTTCTCGTTAGAATCTCCATTGGG
TTCTTCCAAATAATATTCGTACATGggggaggatatagtgtccaggTGTT
AATAAAAAAT Run BLAST on NCBI transcript from alignment at scaffold_311:57803..60414- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058511 ID=TCONS_00058511|Name=TCONS_00058511|organism=Clytia hemisphaerica|type=transcript|length=2612bp|location=Sequence derived from alignment at scaffold_311:57803..60414- (Clytia hemisphaerica)
GCGTAATATCGGAAATGGCATGGAAAGGAGCAAAATGAGGCATGAGAGGT
AGAGAGCGAGTGATTGCGAATAAATAAATAACTATGGTATGGTGGTCAGA
ACGAAGAAAAACTTATTTGCTTCTTACACGTGCATGGTGTGCTTGCATAA
TTTCTACACCAAGCCCCACTAATGAGGAGAAGGGCTACCTCTGCTTTTTC
AGGAAGGAGATTGGATAGTTCTGTTTGTGACATCACAACAATAGAGTTGC
GATTGTTGAGTGAATCGATGACGTTTTTGTAACGAAAAAATGAATTAAAA
CTTCCTTCAAAATTGTTTCAATCTCAAAAAGTGATAAAATCCAAAAGCAA
AAGTAACAAAGAAAAGAAAAGACGAGTTGAAAAGAAGAACCACCCCACAT
TCCGCCCTTCCGGATCGATTGTAAAAGCAAACACTATCTGTGAAATAAAA
TTAAGTTTATCACGAGAAAATAAGGGAAGGCGTTTTCACGCGAAAGTTAA
TATTAAATTCAATTTTGTTCTTGATTCGAAACATTCTACTTTTGCTTGAG
AAGCTTAAAGTGCACATCAAGGATAAACTTCACAAATCAAAAAAGAAATT
AAAATCAAAGTGGAAATTCAGAAAATGACAAAAAGCGGGATGCTGTATCT
TTGCTTTTTCATGGCTTTTGTTTTGTTTTGTCGATGTAGAGTGTCGGAGG
TAGGTTGATGCTTTGCTAGGATTTCACTTTGTGCCAAGCAACCTTTATTT
CATGACGAGATAATACCACCAGTAAAGGTCTATAAATTGTTCATGTTCTT
GGTATTTCTTCGTTTTCCAAGATTTAAAGTTCAGAAGAAAATGATTATCT
AGCATTCTCACTTTATTTCATTGGATATTTTCGATAAGGGTCAATTAGGG
TTGAGCTTAGTTAACTTTCATGTTTTATTATTCTCAGCCCTAATCGAACA
TTTTTAAGTCTCAACAGATTCTTGAATGTCTTTAGTCTGATATAAGGTAT
ATCACTTAAAAATTATTTGCGGTTTTAAAAAATTGTAGGGAATTACCTTT
TTTCAAATTGTTCTAATATTACGATCTCGACTGTACTTCAACTTATAAAA
CATTTAACCTAGTAATCAGTCCTATTTTTGGTCAACCCAGTATTTTGGCA
TGCAAGTTTTACAAAATAAATCAATATGTCAAATCTTCTTTTTCACAGAA
AAAATCTTTTGTGGCTTTATCAAGGCTACGACGAGACACGTGTGAAAGTT
TCAGATGTTCATTGGGTTCATTACAATGCTCAAGCAGTACATTCTGTCAA
AGATGTTGTCAAAACGTTAACTTGGTGTGTGCTACCAACAACAGAGGAAT
TAATGTCTGCAGTGATAGTNTAACTTGGTGTGTGCTACCAACAACAGAGG
AATTAATGTCTGCAGTGATAGTCGTGATCCGCAATAAAAAATGGGACGAC
ATGGAGTTTTTGCAAGCTCTCATTTGATTTGGTTGGTCGTCAACCAGTAA
TAAAACAATTTAATTACTTTTTCTAAAGAACGCATCATTTTTATTACTTC
AAATGACCAATTATTAAAGTATCTTATAAAAACTTCATCTCCTCTGTAAA
AAACTGTGTAAACTATCGAATTATATGTTTGGTGCATAAAAAACAATCGG
CCTGTCGTAAAAAAAGGTTGGTGCCCCCTTAACAATGGGCCTATAGATAT
AATTGTAAATCTTAGATAGGCCTTTTCATAAATTATTTTGAGTGAAAAGA
CTGCCTCGTTTTGAAACCATCGAAATTATCACCAACAAAGGTGATCAAAT
AGCCTGAATATTAAAGTGTTTACTTTAATAAATGGAGAATACTTCTTATG
AACTCCTCTAGGAATCAATAACCACATCAGTAGTTTGAAAACGAGGAAAG
CGTTGCTCTTGTCGTAATTTATGAAAAGGTCTATTGAAAATAAACGTTTT
CAGAGATTTTACCTACATTTATTGACATAGGAAATGTATCTAGTTCTAAG
TCATATTGTATAATAATTGTGTCGAAAAACTAAAATCAAAACCCTACAAA
GGCCTGTCAAACTAATTTCATTTCGAGTTCTCATACACCAATTTTTTTAA
TAAGCAACCCCAATTTTCGGCTCCCTTTCTGAGAAATTTGCTTTGACTAA
CCCTGATTTCATTCCATATTTATGCTTGTTGGGTCATGGGCTACCGTTTG
TCATTGTTAGATTATCTTTAAAAAAACTTTAACTTTAGGAGATAAGGTAT
AAGGTATTTAGTATAAGGTCAAGGCTTAGCAACCTGGTTGCTTATAAAGA
AAAAGCTATTACTTTAATGGGATAAACTTTTGCGGGGATTAAATTTCGCG
GATTTCGCGGATTTGGGTGTCATCCGCGAGAATCCGCGAAATTAAATACC
AATGGAAATTTTGAAGGGCTCGAAATGGGGTTAGTTGTTCCTCTTCTTGC
TCTGATTTTCAAGTGTTTCAAAAAAGTAGAAATATTGTTCAAATGATATA
CCCGATGAACAACAATCTTCTCCCTCTCGTTCTCGTTAGAATCTCCATTG
GGTTCTTCCAAATAATATTCGTACATGGGGGAGGATATAGTGTCCAGGTG
TTAATAAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058511-exon-scaffold_311-1575043694:59716..60414 | TCONS_00058511-exon-scaffold_311-1575043694:59716..60414 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1575043694:59100..59216 | TCONS_00058511-exon-scaffold_311-1575043694:59100..59216 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1575043694:57803..59046 | TCONS_00058511-exon-scaffold_311-1575043694:57803..59046 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1510915933:59716..60414 | TCONS_00058511-exon-scaffold_311-1510915933:59716..60414 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1510915933:59100..59216 | TCONS_00058511-exon-scaffold_311-1510915933:59100..59216 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1510915933:57803..59046 | TCONS_00058511-exon-scaffold_311-1510915933:57803..59046 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1491911889:59716..60414 | TCONS_00058511-exon-scaffold_311-1491911889:59716..60414 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1491911889:59100..59216 | TCONS_00058511-exon-scaffold_311-1491911889:59100..59216 | Clytia hemisphaerica | exon |
| TCONS_00058511-exon-scaffold_311-1491911889:57803..59046 | TCONS_00058511-exon-scaffold_311-1491911889:57803..59046 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:57803..60414 - |
Blast
The following BLAST results are available for this feature:
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