TCONS_00058508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058508
Unique NameTCONS_00058508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058508 ID=TCONS_00058508|Name=TCONS_00058508|organism=Clytia hemisphaerica|type=transcript|length=241bp
TAGGAGGAGCCGTAGTAATGGCAGATGACATTGGCATTACACTTTGTGAA
GCTGACGGTGAAATAGATTGACGAAATGATTGCATTGGTTGTGACATTGG
CATTACACTTTGTGAGGCTGACGGTGAAATAGATTGATGAAATGATTGCA
TTGGTTGTGACATTAGTTGAGAAGCACCATGGTCATCAGCAGGTGGTATG
TTTGGTGTAGGATCGATACTACCCGGTTCGATTACATCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_311:1368670..1368976+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058508 ID=TCONS_00058508|Name=TCONS_00058508|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_311:1368670..1368976+ (Clytia hemisphaerica)
TAGGAGGAGCCGTAGTAATGGCAGATGACATTGGCATTACACTTTGTGAA
GCTGACGGTGAAATAGATTGACGAAATGATTGCATTGGTTGTGACATTGG
CATTACACTTTGTGAGGCTGACGGTGAAAAAGATTGATGAAATGATTGCA
TTGGTTGTGACATTGGCATTGCACTTTGTGAGGCTGACGGTGAAATAGAT
TGATGAAATGATTGCATTGGTTGTGACATTAGTTGAGAAGCACCATGGTC
ATCAGCAGGTGGTATGTTTGGTGTAGGATCGATACTACCCGGTTCGATTA
CATCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036860XLOC_036860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058508-exon-scaffold_311-1491911889:1368670..1368785TCONS_00058508-exon-scaffold_311-1491911889:1368670..1368785Clytia hemisphaericaexon
TCONS_00058508-exon-scaffold_311-1510915933:1368670..1368785TCONS_00058508-exon-scaffold_311-1510915933:1368670..1368785Clytia hemisphaericaexon
TCONS_00058508-exon-scaffold_311-1575043694:1368670..1368785TCONS_00058508-exon-scaffold_311-1575043694:1368670..1368785Clytia hemisphaericaexon
TCONS_00058508-exon-scaffold_311-1491911889:1368852..1368976TCONS_00058508-exon-scaffold_311-1491911889:1368852..1368976Clytia hemisphaericaexon
TCONS_00058508-exon-scaffold_311-1510915933:1368852..1368976TCONS_00058508-exon-scaffold_311-1510915933:1368852..1368976Clytia hemisphaericaexon
TCONS_00058508-exon-scaffold_311-1575043694:1368852..1368976TCONS_00058508-exon-scaffold_311-1575043694:1368852..1368976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1368670..1368976 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.31333	0	0	0.679716	0	0.539143	0.453777	0	0	0	0	19.9202	5.44541	8.51256	0	4.02964	1.30529	0	4.48088	0	0	0	0	1.71004	0.958174	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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