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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058503 ID=TCONS_00058503|Name=TCONS_00058503|organism=Clytia hemisphaerica|type=transcript|length=564bp
TGAACCATTCTCTTTgttctgtgtgtcactttcacTCACATTTGGCGTTG
GATTGTGTTCGCAAATTACAACTGGTGATATAAATGGCTTAATACCGTGT
CAACATTCGAATGAGAGTCTATTGACAAATACAAATAGTGATGGGCTGTC
TTActtttgtcaatattttagTATGAACATGAAAgTTAACCACGGTAACA
AGCAACTCCTGGtcgatttttcatggaaatataAAAGATTTTCGAGCAAG
ATCAAATTCAGTTCTTACCGTCTACCCCAAGTAACCGATATCCATTTATC
ATGTCAAGGGTGTTCCGTAAAAAAATGGATCATTTATAATGCGGTGCTAG
TTGATAAAACCGGACATCGCCGGAAAATGGTTTTCAATGTTAGTTTAAGT
TCAAAGACGAGACATATAGATTGCAAGTTTCGGATGGGAAGTCATTTTTC
GGACAACCTTTGTATCGGACAAGTGAAGGGCGTGGCCACAGTACCTGTTC
ACAAAAATGAACTCAATTTAATAGAGAGAATGGACGATGCGACACGATAC
AAAATCATTGCAGN Run BLAST on NCBI transcript from alignment at scaffold_311:1306598..1317223+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058503 ID=TCONS_00058503|Name=TCONS_00058503|organism=Clytia hemisphaerica|type=transcript|length=10626bp|location=Sequence derived from alignment at scaffold_311:1306598..1317223+ (Clytia hemisphaerica)
TGAACCATTCTCTTTgttctgtgtgtcactttcacTCACATTTGGCGTTG
GATTGTGTTCGCAAATTACAACTGGTGATATAAATGGCTTAATACCGTGT
CAACATTCGAATGAGAGTCTATTGACAAATACAAATAGTGATGGGCTGTC
TTActtttgtcaatattttagTATGAACATGAAAGTAAGtaggaacattt
ttctttatttattctatgtgtgtttttcaaatCTTATTGAGATCAGAATT
GGCAGTTTTGGCCACCATTAGCCTGCGTTTTAGGCGTTTTTCAATTGTAT
AGGACAACTTTGGTTTGAAATTCTTCAGTTTTCCAAATAGTTAGATCAGC
TGATTCAGTCCTTCAGGCTATGGCTGAATCCTTTCCTACCCGACCACCct
tttgacaaattttcgaATTCCAAATTCACTCTCGAATTATCCTAAATGTA
TGCATGTGTGAGTGTAGATCCTCACCCCTAAAATTTCTGGACACAGTCAc
tatataatttttgtttttctaggTTAACCACGGTAACAAGCAACTCCTGG
tcgatttttcatggaaatataAAAGATTTTCGAGCAAGATCAAATTCAGT
TCTTACCGTCTACCCCAAGTAACCGATATCCATTTATCATGTCAAGGGTG
TTCCGTAAAAAAATGGATCATTTATAATGCGGTGCTAGTTGATAAAACCG
GACATCGCCGGAAAATGGTTTTCAATGTTAGTTTAAGTTCAAAGACGAGA
CATATAGATTGCAAGTTTCGGATGGGAAGTCATTTTTCGGACAACCTTTG
TATCGGACAAGTGAAGGGCGTGGCCACAGTACCTGTTCACAAAAATGAAC
TCAATTTAATAGGTAATGATAatacttattttttataagaacataaaggc
ttcgatggccaaaatgttaagaaaatctTAAGCACATTATAAAGCTTTGT
GGACTTTAGAACAccgaatttcttaggaaaatggacaaagatactcaaag
aatgacaaaaataagaacatttttaggcttaaaactcaaaaagtcaagat
catcccaaaggcttcaaaaattttggatgttcttataaaaaaagtggatt
tttgctATTTTGCTCCGAATAGTAAAGGTACTTTTGAATGTACTTTTTGA
ACTGCAGATCCTTTTTTTAAAACATgaactcttttttataagaacagttt
taTAAAAACGACGAGGCTCAAGatcgtcaaaaaataagaactatTTGAGA
GCAATGCTGGctggaattaaaaaattttaagcgcttaaggtggtagtcta
ccgagaaatggaaaatcatcgaaaaaattgtcgaattttggtttttgggt
gttttgagatccttaggtctttctgaacatctcctgGAAATNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatttcc
tgaaaatttcattacgaaatgtaaagaagttcttgagttattgcaaaaaa
tgtgattttttgacttttgaaatctggcggtagactaccaccttaaccCT
TAAAGGTAGCCTAGAAATCtgagctagtttgattcagcctaggataaatc
tgatggtaagttgtgactgaaaaacagtattccaaggcaaacttaaaacc
cgtaaatataaaaaagatctttaaagcgccgaaaacgctatattgccttA
TGCCTTAGCCTAGGCTGCAGCcttagccttgtgaatacgggcttagttaa
ctaggctaccttaaaggtttcatttttacataagtgttcccgtttcatat
caggacagtgtctgcctattgttattgTGCTGTGAAATAATactgttttt
tcttttccttattctgacaaatcttgctccacagttgtgtcaattcaata
tgaaaagcttgtaaattaaaattgatgagtaagcaaacgacatcactctt
attaaaaaacaaaacctttaatacctttattttgttcaaaaaataagaat
aatttgaacctcaaagtgccaaaaaaataaggttTCCTGAAACTCTGATT
TCACCATTTATTGCGAAGATTCACCAAAGTTAGAATTTAGCAGATTCATA
CAAGACTGGCAAAAAGACAATGACTAGAAAAACCAAAGACgtctgaaaat
aaatacttgACATGACAGATTTTTAAGATAGTAACCTTTCTTTGAAATTA
AAACCGACATGTGCCTCAAAGTGGTAGATATAATTCTTGAAGAAATAACT
TATTGTCTAAAAAGGATAGCAGGAGATGCAGGAATTGctgcttagaattt
cttttaccAAAATTGCCCATGCCTAGCACCCTTCTATTTTTGAGATTTGT
AAAGAAAACGCATCTGCACTATCATGTTAAGCCTTTTAGCAAATACCAAA
AGttagtttttgctgattttaattcgaggtcaaattaaattttatggTTG
ATATATGTAGTCTTTGGATTTAGAAATTGTATGTTTCGAAGGGTAGGTTG
TACATAATTTGTGTACTGCAGATGTATCTTGACTATACTGAATTTGGCAC
GTCTGTAGAAAGCGTAACAAATGTTTTTAATAAGAGCGTGAAATTGATGA
ATACttaaagcccggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCCctccatgtacggacattttcttgAAGAGCCCAATCT
TACCATCGTGTATTGAAGTTACCGGGGTTGAGCAAAGGAAACCTGTTCTC
TTGAATACCAGTTATCCTTaacattttaaatttattcGATAAACTTGATC
AGGGTTTATTTTCtttccattttattttgttttgcttcTCTAATAGCTTA
ACTTTTTGTACAGCAGATCTAACTTTATTTAGTATATAATTTTGTCTCGA
ATCTAAGCAATTTGCGATATGCATCAATGCAATgttttctgacattacat
cacggacccaacagctgattggttgtaaaatTATGTGAAaccagtcaata
cgtcactttcaaccaatcagctgttgggtccgtcgAAGACATTGCAACGG
TGCATATCCTGAATACCTTTGAAACATTAATTTCGTGGGTCACTCGGTCT
CTTTTAAGAGAAGGGGAtcaacatttttaatttgattatcCTACAGAATT
AAAACGCATTAAGTCGAAACAAAAAATCTAGAGTATGAGAAAGTAAGAAA
GCTTAAGATAAGGGAGGCATCGTGCACGAGTTATTCTTTTATAAGATTTG
ACCAAAGTatgcgtttttttataagtacacctaaaaatgttcttaacatg
ttcttattttcaccattttgtgagcatttttgtccatttttctaagaaat
cgagtgttttagagtccccaaagccttaaatgttcttaacttgttcttaa
cattttggccatcgaagccttatcttcttaaatagtttgttcttataaaa
aacgtatatgaCAGCTCCCCAGGGGCGGGGGTGGGTAACAGGGTTGCAAG
CAGACGGGAATCTTTGTGAATTCTAAAAGCCTTGTTGGGACTAATTTGGC
CACATTTCAACCTTTCAAGGagtaaaacattttcttttaattccGACCAG
TATTATTAAGGCTGTGATTTAATTTTCTGCTTATTTCTCAAACTGGGACT
ATCAGGATTCCAACTTAGCCCCTCCTGGTGGACTGTATATAATTTGCTTT
GAGGCAAGTTTAGAAGTGCTAATTTGACGAATGTTATAAGAAGCTCGAAC
GGTCCAGCATTGGTATAAACCGCGCGGACCGTAAGTCATGTAGGACATAA
CTGTCAAATCTTATGTAGAAGATTATATCCTAGCCCTTAGGGCTTTGAAT
ACATCAtttcgaccgtagctgccaattgctgtgcgggcatttttttgtcc
gttttactgtcctaaaaccgtcccagtcttgtttttgcacctaaagacaa
tagaaaaaagtgtaaaagaagggttggatcgagtttagggtggttaaata
aataataaagtggcactcGCCTGAttgcgcgactacggtcgaaaaggtat
aTTCATTTTGTGCAACCTGACTACCAGTCACTTGCAGGACAGTGaaagtt
ttattataagcatacTCTATTCTTAGTTTTGCACTTGTTCTTTTCTTATA
GAACAATAGAGGAATATGCTGAACTACTAAAAGCTTTTAATACCTAGATA
AATAAAGTTATGTCTACTAAATAAGACCTCCATAAATTTACAAAAGCGAT
ACAGATTTACAATATGATATATTTTGACAATGTGATACAGATTTACAGTG
ACATATTTTGATATTGTGGTAATTGAATTTAAATAACATTCAATGATaat
ccagctggcacacaacgttgttttaacgttcatgaacgttatatggacgt
tgtgaacgttagataaacgttgaaacaacgctgtgtaccagctgggaagg
agcattttttgatgtctgaaaatttattttacaaatgccttgaaaaaaaa
tcttgaacgTTTTAAAAGAAATTGGTACTAAAATTGGATGACAATTTTAA
CGACTCTTCAAGGAATTGGTACTAGGATTTGTTCAGATAAACAGGGAAga
atattttgattgattttaattGGTTACGAAGAAGATAGGAAGCATGGACC
CCAGTACTCGTTCTGATGGTAATTTGACCAACACTTTTAAGTCATCTTAA
TTCGAATTCTAACGGGTGGGGCGTTGGTTATTAATTGAGCTACAGAGAGT
TTGAGTTCTAAAGGGACCAGAAAAATCGATCGCTGGTGTTGCGGCTGCTC
GAGTGATGGAGAGATGCGTTCATTAGAGACTCTAAAAGGAGTTTGAGTTA
CTGCAACTCCGGGGGGTGTGAGCCAtaaagggtccctttttcacaacctc
gaaagtctctcaaaaaccattaaaaagcaaattgagtcgcaaaattcacg
aaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTCcgattaaaaaaa
tctaaaatttaatttcgatttaaaaaatttaaaaatcgagtgaatatcga
taaaatttttgaaaaaagtctctctaagggtcccaaaaacgcaAATCTTt
gctctctctaagggtcaattttcgatttttgcctCGCAAACATAGTTTCT
TCCCAAATACCACGTCACATGATAGCATTTTTAAAATCCCTAAAAATTTT
ATCGTTCAGAAggtaaagttttcttttaaaagtcaaCTGTACTGTTGACT
TTCTCTTAATCGATCGCCAATTGAATAtcatgggataaactttcgcggtt
aGGCCtatatccgcgaaattcaaaaatttcgcggggacttaatttcgcgg
gtggcactattgggtggcaatattttcacgatgtTGTggcttttactgtc
aaatcatgcatgttggttgttgaattACACATTAtgtgcgcttctttgat
gcaaatAAACATTGGTatatttatttgacattttttgtttgagttttgtt
tagaaatatttcgcggatgaggcccttccaaatttccactGGGACTTAAC
TTCGCGGGTTTTCGCGGATGACAgccaatccgcgaaatccgcgaaattta
atccccgcgaaagtttatcccattaaagtaagaTTCTAATTACATAGACT
ATTTTATACTATACTTTTCAGCCGAGGGACCCATATTccagttcgaatta
tagagagattgGAATAGTAGaagctcgaattagagagagctgaCAGTATT
TTCATCATCTTTATAATTGGGCATCAACAGACTTATTGCCTTATTtactg
ttttttatttaaaagtaaatttttctaagatttcTTCNgggggggggggg
ggggggtgtgagCCAtaaagggtccctttttcacaacctcgaaagtctct
caaaggggtacaaaaaccattaaaaagcaaattgagtctcaaaattcacg
aaaatagAAATTTCCTCTCTTAAAGGTTCGTGTTTTTccgattaaaaaat
ttaaaaatcgagtgaatatcgataaaatttttgaaaaaagtctctataag
ggtcccaaaaacgcaAATCTTtgctctctctaagggtcaattttcgattt
ttgtctCGCAAACATAGTTTCTTCCCAAATACCACGTCACATGATAGCAT
TTTTAAAATCCCTAAAAATTTTATCGTTCAGAaggtaaagttttttttaa
aaagtcaaCTGTACTGTTGAGTCTCTCTTAATCGATCGCCAATTGAATTA
GAATAAGATTCGAATTACATAGACTATTTTATACTATACTTTCCAGCCGA
GGGACCAATATTccagttcgaattatagagagattgGAATAGTAGaagct
cgaattagagagagttgacagTATTTTAATCATCTTTATAATTGGGCATC
AACAGACTTATTGGCTTATTTActgtttttcatttaaaagttaatttttc
taAGATTTCTTCTCAActtattttagtttttcttctattttgataaaatt
agaaAGATATTCATATCTGCACAAGAAAATAATTCGCTACAATTTGGAGT
GAGATAGacaaaaaaattaggaaaggaTCTATAGGGAAAATCTCGAAAAG
ACTGTAACAGTTTTTGAAGAAGataatttttcactttctttttcaatatC
TTGAGTTCTGGcaggtgattttttttctctattttctgTCTTAAAAACTG
TAAtctactttttcactttttcagcCTATACATTATTTCTATTTTCTCCT
TTCCTTGTTTTATCTACCTCATTTTCTTGCTAATGTCAAACCTTTTGACT
TTTTAAGCCTATTTAAGTTTTTGTCATATCTTTCTTCCTCGATAGTTCGT
GATAGATTTTGCTGTGTTTCACTCATTTCACTCACACTGATGAAGTTTTC
AATAACACAAATCATTGAAACAGCCCAGCCTGCAcgtaacgttgtttcaa
cgtccatcaatgttcacaacgtctatataacgttagataaacgttgaaac
aacgttgtgtgtcagctgggaacgTATTTCTAACTTCCGATGTACGTTAT
TGCAACGTGTTTccgacattacatcatggacccaacaacttgattggttg
caagtgacgtattcatgatatgtaccattgcaatgtcttccacggaccga
acagctgattggttgaaagtgacgttgATTTTACCCAAacagctgttggg
tctgtggtgtaatatcagaagacattgcaatggtgcatatcatgaattgc
ctGATtctacgtcacttacaaccaatcagctgatGGTTCTATGGATGTAA
TGTAGCAAGACGCAACAAATCTAGGAGAATCTGAAGTTTTAGACCAAAAG
AATACGGCTTGATTTTATGCTTTATGATTGAGATATTCTAAGTATTAGCC
GTCAAGTAATAATTtctaatttattatttttctcagAGAGAATGGACGAT
GCGACACGATACAAAATCATTGCAGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058503-exon-scaffold_311-1491911889:1306598..1306781 | TCONS_00058503-exon-scaffold_311-1491911889:1306598..1306781 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1510915933:1306598..1306781 | TCONS_00058503-exon-scaffold_311-1510915933:1306598..1306781 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1575043694:1306598..1306781 | TCONS_00058503-exon-scaffold_311-1575043694:1306598..1306781 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1491911889:1307120..1307459 | TCONS_00058503-exon-scaffold_311-1491911889:1307120..1307459 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1510915933:1307120..1307459 | TCONS_00058503-exon-scaffold_311-1510915933:1307120..1307459 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1575043694:1307120..1307459 | TCONS_00058503-exon-scaffold_311-1575043694:1307120..1307459 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1491911889:1317184..1317223 | TCONS_00058503-exon-scaffold_311-1491911889:1317184..1317223 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1510915933:1317184..1317223 | TCONS_00058503-exon-scaffold_311-1510915933:1317184..1317223 | Clytia hemisphaerica | exon |
| TCONS_00058503-exon-scaffold_311-1575043694:1317184..1317223 | TCONS_00058503-exon-scaffold_311-1575043694:1317184..1317223 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1306598..1317223 + |
Blast
The following BLAST results are available for this feature:
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