|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058501 ID=TCONS_00058501|Name=TCONS_00058501|organism=Clytia hemisphaerica|type=transcript|length=1075bp
AACAGACAGATAATCAATGATGAAGAAGGGCATTGTGTTATCCATTACAC
TAATTTTGTTATTGGTTATAATCGAGGCGCTCGAAACTGACCAATGTGGC
CCTAAAGATTCTTATTTTGTAAAATCGAATAAAGGCTGGGAAATTGGGAC
GGGATCTTGGAGTGACTCTTTCAAAGTCGATAATGAGATACAATGCCCCT
CAAGATGTCATCGTGTGCCTAAATGTGTTTCTGCTGCATTTTATGTGGAC
ACCAAAATATGCCGTCTGTCAGATACAAACCGAATGACCGTTAATGTTGT
TTTGAAACTTGTACCGGGAATTGTGTATTACGAGCGGAAACTATGTTCTT
CGAAAAAGACTAGTTTCATAGCTATCATACCGAGCGCGAAAGATTGCACA
GATATAAAACGAAAGGGTTGGAAATCGTCTGGTGTTTACGCTGTTGGAGA
AGGAGAAAACCCCCGTCAAATTCTTTGTGAAATGTCACTGTTAGACGGGG
GTTGGACCGTCTTTCAAGAACGTGTCGATGATTCAGTGTCTTTCCAACGG
AACTGGGCTGACTACAAAGAAGGCTTTGGATCGTTAGACGGTAATCTTTG
GTACGGAAATGATCAGATTCACAATTTGACCTGGTATTCTGAGCAAGGAA
ACGAACTCTTGATAGAAATGGTAAGACCAAATAACCAAATCTATTATCTC
CTGTATGATGGATTCAAAGTGGCTGCGGAAAGTGATGACTACAGATTAAC
TAGTGGCAATTACCGAAATGCGGGCATTGGAACTGTGATCAATGGATATT
TTTATGGCTTAGGATCGCATGATCAAATGAGATTCAGTACTATCGACCGT
GATAATGACATTAAATCGACTGAACATTGTGGACAGaaCCGTGGTAGTGG
ATTTTGGTTcaattattgtttttttctctcGCTTAACGGGATGTATGGTT
CCCAATATAGCGGCTCACCATACAGAGGAATTCATTGGACCTATTTATGT
GACGGCCCGTTTTGTGAAACTCTCATTTCAACTCGAATGATGACTCGACG
AAAACAATAAGAATTCTGCTCAGCC Run BLAST on NCBI protein sequence of TCONS_00058501-protein >TCONS_00058501-protein ID=TCONS_00058501-protein|Name=TCONS_00058501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
MMKKGIVLSITLILLLVIIEALETDQCGPKDSYFVKSNKGWEIGTGSWSD
SFKVDNEIQCPSRCHRVPKCVSAAFYVDTKICRLSDTNRMTVNVVLKLVP
GIVYYERKLCSSKKTSFIAIIPSAKDCTDIKRKGWKSSGVYAVGEGENPR
QILCEMSLLDGGWTVFQERVDDSVSFQRNWADYKEGFGSLDGNLWYGNDQ
IHNLTWYSEQGNELLIEMVRPNNQIYYLLYDGFKVAAESDDYRLTSGNYR
NAGIGTVINGYFYGLGSHDQMRFSTIDRDNDIKSTEHCGQNRGSGFWFNY
CFFLSLNGMYGSQYSGSPYRGIHWTYLCDGPFCETLISTRMMTRRKQ Run BLAST on NCBI transcript from alignment at scaffold_311:1282004..1285498+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058501 ID=TCONS_00058501|Name=TCONS_00058501|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at scaffold_311:1282004..1285498+ (Clytia hemisphaerica)
AACAGACAGATAATCAATGATGAAGAAGGGCATTGTGTTATCCATTACAC
TAATTTTGTTATTGGTTATAATCGAGGCGCTCGAAACTGACCAATGTGGC
CCTAAAGATTCTTATTTTGTAAAATCGAATAAAGGCTGGGAAATTGGGAC
GGGATCTTGGAGTGACTCTTTCAAAGTCGATAATGAGATACAATGCCCCT
CAAGATGTCATCGTGTGCCTAAATGTGTTTCTGCTGCATTTTATGTGGAC
ACCAAAATATGCCGTCTGTCAGATACAAACCGAATGACCGTTAATGTTGT
TTTGAAACTTGTACCGGGAATTGTGTATTACGAGCGGAAACTATGTTCTT
CGAAAAAGACTAGTTTCATAGCTATCATACCGAGCGCGAAAGATTGCACA
GATATAAAACGAAAGGGTTGGAAATCGTCTGGTGTTTACGCTGTTGGAGA
AGGAGAAAACCCCCGTCAAATTCTTTGTGAAATGTCACTGTTAGACGGGG
GTTGGACCGTCTTTCAAGAACGTGTCGATGATTCAGTGTCTTTCCAACGG
AACTGGGCTGACTACAAAGAAGGCTTTGGATCGTTAGACGGTAATCTTTG
GTACGGAAATGATCAGATTCACAATTTGACCTGGTATTCTGAGCAAGGTa
attaattttgttttcttaaATTGATTTGTCAAAGTAGAAATAAATTTGGT
TGCAGCTACCATAGAAAAACtcatctcaaaatattttcattgtgCAACTT
GGTAGAACTTTcacagatgagatggagtttttataagatactttaataat
tggtcatttgtaagtaaaagtaaaataagtaaaaaaattaagcgttcttt
agaaaaacgaccaaccaaatcaaataagagcttgtaaaaactccatctca
ccCCAACTTTCAAGGTGTGTACCACAATCGTGACATGAGCTAAACCTTgc
tgtttcttagtttttttgcGAGCTAAATTTTTCGTTACTTCCAATCTAAC
GTTTTCATGAAAACCACGCGGGCCGCGCGCCTTTGATAGGAAATTAGTGG
TTTCATCTCCCATCCAAATGTCTTGAGTCTTGCGACACGTGCATGGATAT
AATAAACGCACAGATATCTTAAATGTCAAAAACATAAGATAGAGCGACTC
TGAGCTACTCTGTTTTTTCCAAGCAACGgtatttgaagcaaaataatccg
ccatctCTGCTGAAAAAAGACCATagtagaccatagttcggtaccggcaa
tttgttcaatcaaaacaaagaactgATAAAGGAAGCGAGAAAATGTTCTt
gattgatcaaattgccggcgCCAAACTGTGGTCTACTTTTTCAAGATCGC
GGATTATTTTGCTTCTACCAAGGACGGAGCAGCTCTAtctattgtttttt
taatacaagatATCTGTGGATATACCCTGTTActcattttcagtattttt
taaTTCACAGGAAACGAACTCTTGATAGAAATGGTAAGACCAAATAACCA
AATCTATTATCTCCTGTATGATGGATTCAAAGTGGCTGCGGAAAGTGATG
ACTACAGATTAACTAGTGGCAATTACCGAAATGCGGGCATTGGAACTGTG
ATCAATGGATATTTTTATGGCTTAGGATCGCATGATCAAATGAGATTCAG
TACTATCGACCGTGATAATGACATTAAATCGACTGAACATTGTGGACAGG
TTAGTTTGTTTCGTTCTCAACTTTGGCTATAATTTTGTATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcggggggggggggtagtagggttg
gcggatgagcggtatgtgcggacgggacctccgaaaaccgacccttagag
actgagttttgctgaaaaggttatccttagagagacttttttacattttt
ttcactcaaaataaaaaatattttctaaaatcgtgAACTTTCTACCCTTA
ATGAGACTAGTTTAAGCTTACACAGCACCCCTTTTTGACTAAGTAACCCC
TCCCGGATATAATGTATGTCTTTTCAGATGAACAGATAAAAAGTATACAT
ACTTGAAGCTGCTTGCTGACCTTGCAAGAACAGTGCAAATAATATACACA
AGGTTCATCAAGATTGGgctttttcattaaatttccatacaggtgGACAT
ACCTTTTCTAGGGCAAAAAAGATTGCGAAAATTTGTCGGTACCCCGTGGA
CaataacaaaatttgcaaaagaacccttggaaaacTTCTTTCCATACCTT
AAATGTGAGGGTAACGAACTAAAGTCATTCTTTTACACCTtggaaatttt
tagaataaccTTTTAACTCCTGGAAAAAATGATATACATACTTCtttata
ccccctggaaattcttcttcgATTACCCCTAGGAAATGTTCGTAcacccc
ccctgtatggatataaaatgtaaTGGCCCATTGTAGATATAGGccattct
ttttaatttttattcaacAATTTCAACGTCAAAGCGTTCTAAATTAATGG
TCTTCATTATGTAATTTTAGATAGGTATTCCATTGTTCAATGTAGAACAA
TCACTTTATGTGGCGcgtgctgttttgttttgacgaTGCAATGTTTTCGC
GAGCTCAGCTTATTTTTCTCAGCTTTAAACTAATTTGGCTTCCTTTACAT
TGTCCTTATTGGAATGAGGTTAGCGAGGGATGCccccacagatatcttat
ttAAAACACCAGTCTATATTGAGCTACTCTatatttcccaagcaacggca
GGTGAAGCAAATCAACCCACTATCTTTGCTTAAGTAGGTCACGTTAAGTA
GGTTGGTTTTCactgttgaaacttttttgacactgcaatgacaaaatttc
aaggttgcGAGATAACtaaattgtgacgtcacttctTTCAAGATGGcgaa
ttattttgcttcagcctctttaggcgtacaaactttcgcgagcagaaact
ttcgtgagcagaaactttcgtgagGACGAAAAATTcgagacatttacttt
cgcgaatttaacggaaaagattttcgcgaaaagagccaaaattcgcgaaa
atcgcgaaagttactgctcgcgaaagtttgtacgcctaaagtaggtCCGG
AGTAGTATTGTTTTATAAAAGATATCTGTGGTTGCCCTTCCTCATTTgta
tttttccgatttttgttAACCTTCATGCAAACGATAtcacaatttctctt
ttttagaaCCGTGGTAGTGGATTTTGGTTcaattattgtttttttctctc
GCTTAACGGGATGTATGGTTCCCAATATAGCGGCTCACCATACAGAGGAA
TTCATTGGACCTATTTATGTGACGGCCCGTTTTGTGAAACTCTCATTTCA
ACTCGAATGATGACTCGACGAAAACAATAAGAATTCTGCTCAGCC Coding sequence (CDS) from alignment at scaffold_311:1282004..1285498+ >TCONS_00058501 ID=TCONS_00058501|Name=TCONS_00058501|organism=Clytia hemisphaerica|type=CDS|length=3132bp|location=Sequence derived from alignment at scaffold_311:1282004..1285498+ (Clytia hemisphaerica)
ATGATGAAGAAGGGCATTGTGTTATCCATTACACTAATTTTGTTATTGGT
TATAATCGAGGCGCTCGAAACTGACCAATGTGGCCCTAAAGATTCTTATT
TTGTAAAATCGAATAAAGGCTGGGAAATTGGGACGGGATCTTGGAGTGAC
TCTTTCAAAGTCGATAATGAGATACAATGCCCCTCAAGATGTCATCGTGT
GCCTAAATGTGTTTCTGCTGCATTTTATGTGGACACCAAAATATGCCGTC
TGTCAGATACAAACCGAATGACCGTTAATGTTGTTTTGAAACTTGTACCG
GGAATTGTGTATTACGAGCGGAAACTATGTTCTTCGAAAAAGACTAGTTT
CATAGCTATCATACCGAGCGCGAAAGATTGCACAGATATAAAACGAAAGG
GTTGGAAATCGTCTGGTGTTTACGCTGTTGGAGAAGGAGAAAACCCCCGT
CAAATTCTTTGTGAAATGTCACTGTTAGACGGGGGTTGGACCGTCTTTCA
AGAACGTGTCGATGATTCAGTGTCTTTCCAACGGAACTGGGCTGACTACA
AAGAAGGCTTTGGATCGTTAGACGGTAATCTTTGGTACGGAAATGATCAG
ATTCACAATTTGACCTGGTATTCTGAGCAAGGAAACGAACTCTTGATAGA
AATGGTAAGACCAAATAACCAAATCTATTATCTCCTGTATGATGGATTCA
AAGTGGCTGCGGAAAGTGATGACTACAGATTAACTAGTGGCAATTACCGA
AATGCGGGCATTGGAACTGTGATCAATGGATATTTTTATGGCTTAGGATC
GCATGATCAAATGAGATTCAGTACTATCGACCGTGATAATGACATTAAAT
CGACTGAACATTGTGGACAGaaCCGTGGTAGTGGATTTTGGTTcaattat
tgtttttttctctcGCTTAACGGGATGTATGGTTCCCAATATAGCGGCTC
ACCATACAGAGGAATTCATTGGACCTATTTATGTGACGGCCCGTTTTGTG
AAACTCTCATTTCAACTCGAATGATGACTCGACGAAAACAATAAATGATG
AAGAAGGGCATTGTGTTATCCATTACACTAATTTTGTTATTGGTTATAAT
CGAGGCGCTCGAAACTGACCAATGTGGCCCTAAAGATTCTTATTTTGTAA
AATCGAATAAAGGCTGGGAAATTGGGACGGGATCTTGGAGTGACTCTTTC
AAAGTCGATAATGAGATACAATGCCCCTCAAGATGTCATCGTGTGCCTAA
ATGTGTTTCTGCTGCATTTTATGTGGACACCAAAATATGCCGTCTGTCAG
ATACAAACCGAATGACCGTTAATGTTGTTTTGAAACTTGTACCGGGAATT
GTGTATTACGAGCGGAAACTATGTTCTTCGAAAAAGACTAGTTTCATAGC
TATCATACCGAGCGCGAAAGATTGCACAGATATAAAACGAAAGGGTTGGA
AATCGTCTGGTGTTTACGCTGTTGGAGAAGGAGAAAACCCCCGTCAAATT
CTTTGTGAAATGTCACTGTTAGACGGGGGTTGGACCGTCTTTCAAGAACG
TGTCGATGATTCAGTGTCTTTCCAACGGAACTGGGCTGACTACAAAGAAG
GCTTTGGATCGTTAGACGGTAATCTTTGGTACGGAAATGATCAGATTCAC
AATTTGACCTGGTATTCTGAGCAAGGAAACGAACTCTTGATAGAAATGGT
AAGACCAAATAACCAAATCTATTATCTCCTGTATGATGGATTCAAAGTGG
CTGCGGAAAGTGATGACTACAGATTAACTAGTGGCAATTACCGAAATGCG
GGCATTGGAACTGTGATCAATGGATATTTTTATGGCTTAGGATCGCATGA
TCAAATGAGATTCAGTACTATCGACCGTGATAATGACATTAAATCGACTG
AACATTGTGGACAGaaCCGTGGTAGTGGATTTTGGTTcaattattgtttt
tttctctcGCTTAACGGGATGTATGGTTCCCAATATAGCGGCTCACCATA
CAGAGGAATTCATTGGACCTATTTATGTGACGGCCCGTTTTGTGAAACTC
TCATTTCAACTCGAATGATGACTCGACGAAAACAATAAATGATGAAGAAG
GGCATTGTGTTATCCATTACACTAATTTTGTTATTGGTTATAATCGAGGC
GCTCGAAACTGACCAATGTGGCCCTAAAGATTCTTATTTTGTAAAATCGA
ATAAAGGCTGGGAAATTGGGACGGGATCTTGGAGTGACTCTTTCAAAGTC
GATAATGAGATACAATGCCCCTCAAGATGTCATCGTGTGCCTAAATGTGT
TTCTGCTGCATTTTATGTGGACACCAAAATATGCCGTCTGTCAGATACAA
ACCGAATGACCGTTAATGTTGTTTTGAAACTTGTACCGGGAATTGTGTAT
TACGAGCGGAAACTATGTTCTTCGAAAAAGACTAGTTTCATAGCTATCAT
ACCGAGCGCGAAAGATTGCACAGATATAAAACGAAAGGGTTGGAAATCGT
CTGGTGTTTACGCTGTTGGAGAAGGAGAAAACCCCCGTCAAATTCTTTGT
GAAATGTCACTGTTAGACGGGGGTTGGACCGTCTTTCAAGAACGTGTCGA
TGATTCAGTGTCTTTCCAACGGAACTGGGCTGACTACAAAGAAGGCTTTG
GATCGTTAGACGGTAATCTTTGGTACGGAAATGATCAGATTCACAATTTG
ACCTGGTATTCTGAGCAAGGAAACGAACTCTTGATAGAAATGGTAAGACC
AAATAACCAAATCTATTATCTCCTGTATGATGGATTCAAAGTGGCTGCGG
AAAGTGATGACTACAGATTAACTAGTGGCAATTACCGAAATGCGGGCATT
GGAACTGTGATCAATGGATATTTTTATGGCTTAGGATCGCATGATCAAAT
GAGATTCAGTACTATCGACCGTGATAATGACATTAAATCGACTGAACATT
GTGGACAGaaCCGTGGTAGTGGATTTTGGTTcaattattgtttttttctc
tcGCTTAACGGGATGTATGGTTCCCAATATAGCGGCTCACCATACAGAGG
AATTCATTGGACCTATTTATGTGACGGCCCGTTTTGTGAAACTCTCATTT
CAACTCGAATGATGACTCGACGAAAACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058501-exon-scaffold_311-1491911889:1282004..1282650 | TCONS_00058501-exon-scaffold_311-1491911889:1282004..1282650 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1510915933:1282004..1282650 | TCONS_00058501-exon-scaffold_311-1510915933:1282004..1282650 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1575043694:1282004..1282650 | TCONS_00058501-exon-scaffold_311-1575043694:1282004..1282650 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1491911889:1283464..1283702 | TCONS_00058501-exon-scaffold_311-1491911889:1283464..1283702 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1510915933:1283464..1283702 | TCONS_00058501-exon-scaffold_311-1510915933:1283464..1283702 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1575043694:1283464..1283702 | TCONS_00058501-exon-scaffold_311-1575043694:1283464..1283702 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1491911889:1285310..1285498 | TCONS_00058501-exon-scaffold_311-1491911889:1285310..1285498 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1510915933:1285310..1285498 | TCONS_00058501-exon-scaffold_311-1510915933:1285310..1285498 | Clytia hemisphaerica | exon |
| TCONS_00058501-exon-scaffold_311-1575043694:1285310..1285498 | TCONS_00058501-exon-scaffold_311-1575043694:1285310..1285498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:1282004..1285498 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00058501 vs. Swiss-Prot (Human)
Match: FIBG (Fibrinogen gamma chain OS=Homo sapiens GN=FGG PE=1 SV=3) HSP 1 Score: 130.568 bits (327), Expect = 9.525e-34 Identity = 82/210 (39.05%), Postives = 110/210 (52.38%), Query Frame = 2
Query: 383 SAKDCTDIKRKGWKSSGVYAVGEGENPRQIL--CEMSLLDGGWTVFQERVDDSVSFQRNWADYKEGFGSLDGN----LWYGNDQIHNLTWYSEQGNELLIEMVRPNNQIYYLLYDGFKVAAESDDYRLTSGNYRNAGIGTVINGYFYG-------LGSHDQMRFSTIDRDNDIKSTEHCGQNRGSGFWFNYCFFLSLNGMYGSQYSGSPY 973
+ KDC DI KG K SG+Y + + +Q L CE+ GWTVFQ+R+D SV F++NW YKEGFG L W GN++IH ++ S L +E+ N + Y FKV E+D YRLT + G +G+ +G SH+ M+FST D DND K +C + GSG+W N C LNG+Y Y G Y
Sbjct: 175 TGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDND-KFEGNCAEQDGSGWWMNKCHAGHLNGVY---YQGGTY 380
The following BLAST results are available for this feature:
|
