TCONS_00058498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058498
Unique NameTCONS_00058498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058498 ID=TCONS_00058498|Name=TCONS_00058498|organism=Clytia hemisphaerica|type=transcript|length=1369bp
caaaaataagaTAATATaccgagaaaaaaaaaagagaaacaaaaaTGCCT
GGCAATGATAAAATCCAAGAAGAAAATTATGTTGCAGCAATGGTTTTGGC
AGGTGTTGGTGACGCTATGGGTTACAAATGTGGACAATGGGAATTTGATT
TCGTCGGTGAGCATATTCACAAGGAATTAAAAGCACTTGGTGGTGTcaat
aaactaaaaatcaaaacatcagaATTCATGGTTAGTGATGATACTGTCTT
GCTGTTATCTACGGCAGATTCTCTGGTTACTAttggcaaaaagttgaaat
ctgGTAAAATTGTTGACGAAGGAGATTATTATAATAAGTTGTATGCGGAG
TTTTCTTTTCGTTATCAAAATGATGTCAGTAAAGATATGAATGGTAGAGC
ACCTGGTAATGGAACCATGGTGGCTTGCCGCCAGATGCACCCGCTCCGCC
CACACGGTTGGGAAATCCCCTTTAACTCGCGTGGTGGTGGGTGTGGTGCC
GCTATGCGAGCTATGGCTATCGGGTTGCGTTACCCAAATATGTCAGATTC
AAAATGTATTGAGAATCTTATTCGAGTCAGTGTCGAGAGTGGACGCATGA
CTCATAATTGTCCAACTGGGTATTTAGGGTCGTTTGCTACGGCCCTGTTT
GGTGCTTTTGCTGTTAGCAGAGTACCACTTATCCGATGGGGAAAATATTT
AATCAAAGCGCTGCCCCATGTTCAACGCTATGTTGTAAAGGTAGGTCGTG
ATGTAGAAGATAATCAGAAGAATTGGGCCTACTTTGGAGAACAATGGGCC
AAATTTTTGGAAACCCGGGGCTTAACAAATGGAGATGGGTGGCCGAAATT
TCCTGAGAAATATGGTGTTGCTGAACGAGATGCATTTTATAAGTCAGTTT
CTTTCAGCGGTTGGGGTGGCGCAAGTGGCCATGACGCACCTATGATTGCG
TACGATGCGTTGCTAGCGGCCGATAGCGGTGGTTGGGAAAAGCTCTGTCA
TCATGGTATGTTACATGGAGGGGATAACGATTCGTCTGGTGTGATTGCCG
GATTCTGTTATGGTGCAATGCATGGTTTTGAAGATGTGTCTAAAAAGAAT
CATGCTGAAGTGGAGAAAAGACTTCGTCTGGTTGGTTGTGGTGAAGATTT
GTACACGTTAGCGAAACCGTATATAGAGGTAATGGGAGAAGAATATTTGT
TTGAGGAAGCTATTGAACAGATTTTTGGCGATGATTCTTTTATTTATCCC
ATTAGAAAAGAGTAGATTTTATTGTGTCCTAAAACTGCTGGCTAGCTGTA
GTTGAAATGCACTCATTTGTAATTTCACTTTAATCACCAAATTGGCAGGG
ATTTTTctatacacttttt
Run BLAST on NCBI

transcript from alignment at scaffold_311:1273578..1274946+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058498 ID=TCONS_00058498|Name=TCONS_00058498|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at scaffold_311:1273578..1274946+ (Clytia hemisphaerica)
caaaaataagaTAATATaccgagaaaaaaaaaagagaaacaaaaaTGCCT
GGCAATGATAAAATCCAAGAAGAAAATTATGTTGCAGCAATGGTTTTGGC
AGGTGTTGGTGACGCTATGGGTTACAAATGTGGACAATGGGAATTTGATT
TCGTCGGTGAGCATATTCACAAGGAATTAAAAGCACTTGGTGGTGTcaat
aaactaaaaatcaaaacatcagaATTCATGGTTAGTGATGATACTGTCTT
GCTGTTATCTACGGCAGATTCTCTGGTTACTAttggcaaaaagttgaaat
ctgGTAAAATTGTTGACGAAGGAGATTATTATAATAAGTTGTATGCGGAG
TTTTCTTTTCGTTATCAAAATGATGTCAGTAAAGATATGAATGGTAGAGC
ACCTGGTAATGGAACCATGGTGGCTTGCCGCCAGATGCACCCGCTCCGCC
CACACGGTTGGGAAATCCCCTTTAACTCGCGTGGTGGTGGGTGTGGTGCC
GCTATGCGAGCTATGGCTATCGGGTTGCGTTACCCAAATATGTCAGATTC
AAAATGTATTGAGAATCTTATTCGAGTCAGTGTCGAGAGTGGACGCATGA
CTCATAATTGTCCAACTGGGTATTTAGGGTCGTTTGCTACGGCCCTGTTT
GGTGCTTTTGCTGTTAGCAGAGTACCACTTATCCGATGGGGAAAATATTT
AATCAAAGCGCTGCCCCATGTTCAACGCTATGTTGTAAAGGTAGGTCGTG
ATGTAGAAGATAATCAGAAGAATTGGGCCTACTTTGGAGAACAATGGGCC
AAATTTTTGGAAACCCGGGGCTTAACAAATGGAGATGGGTGGCCGAAATT
TCCTGAGAAATATGGTGTTGCTGAACGAGATGCATTTTATAAGTCAGTTT
CTTTCAGCGGTTGGGGTGGCGCAAGTGGCCATGACGCACCTATGATTGCG
TACGATGCGTTGCTAGCGGCCGATAGCGGTGGTTGGGAAAAGCTCTGTCA
TCATGGTATGTTACATGGAGGGGATAACGATTCGTCTGGTGTGATTGCCG
GATTCTGTTATGGTGCAATGCATGGTTTTGAAGATGTGTCTAAAAAGAAT
CATGCTGAAGTGGAGAAAAGACTTCGTCTGGTTGGTTGTGGTGAAGATTT
GTACACGTTAGCGAAACCGTATATAGAGGTAATGGGAGAAGAATATTTGT
TTGAGGAAGCTATTGAACAGATTTTTGGCGATGATTCTTTTATTTATCCC
ATTAGAAAAGAGTAGATTTTATTGTGTCCTAAAACTGCTGGCTAGCTGTA
GTTGAAATGCACTCATTTGTAATTTCACTTTAATCACCAAATTGGCAGGG
ATTTTTctatacacttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036855XLOC_036855Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058498-exon-scaffold_311-1491911889:1273578..1274946TCONS_00058498-exon-scaffold_311-1491911889:1273578..1274946Clytia hemisphaericaexon
TCONS_00058498-exon-scaffold_311-1510915933:1273578..1274946TCONS_00058498-exon-scaffold_311-1510915933:1273578..1274946Clytia hemisphaericaexon
TCONS_00058498-exon-scaffold_311-1575043694:1273578..1274946TCONS_00058498-exon-scaffold_311-1575043694:1273578..1274946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1273578..1274946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.7477	5.77357	7.28143	4.52827	9.75126	9.19998	8.24516	8.01368	7.6823	10.871	10.6016	6.67429	10.6862	8.62597	4.33416	5.47624	5.03394	5.28806	3.10578	9.2182	3.78919	3.11174	5.05745	3.7457	10.9019	12.8654	1.83929	2.19905	4.70517	5.23924
Blast
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BLAST of TCONS_00058498 vs. Swiss-Prot (Human)
Match: ADPRH ([Protein ADP-ribosylarginine] hydrolase OS=Homo sapiens GN=ADPRH PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 2.398e-100
Identity = 182/363 (50.14%), Postives = 249/363 (68.60%), Query Frame = 3 
Query:   72 ENYVAAMVLAGVGDAMGYKCGQWEFDFVGEHIHKELKALGGVNKLKIKTSEFMVSDDTVLLLSTADSLVTIGKKLKSGKIVDEGDYYNKLYAEFSFRYQNDVSKDMNGRAPGNGTMVACRQMHPLRPHGWEIPFNSXXXXXXXXXXXXXIGLRYPNMSDSKCIENLIRVSVESGRMTHNCPTGYLGSFATALFGAFAVSRVPLIRWGKYLIKALPHVQRYVVKVGRDVEDNQKNWAYFGEQWAKFLETRGLTNGDGWPKFPEKYGVAERDAFYKSVSFSGWGGASGHDAPMIAYDALLAADSGGWEKLCHHGMLHGGDNDSSGVIAGFCYGAMHGFEDVSKKNHAEVEKRLRLVGCGEDLYTL 1160
            E YVAAMVL+  GDA+GY  G+WEF   GE IH++L  LGG++ L +    + VSDDTV+ L+TA++LV  GK  K            +LY   +  YQ D  +DM+GRAPG  ++    Q+ P +P+GW IPFNS  GGCGAAMRAM IGLR+P+ S    ++ LI+VS+ESGRMTH+ PTGYLG+ A+ALF A+AV+  P ++WGK L++ LP  ++Y+V+ G  VE+N ++W+YF  +W  +L+ RG+ +G+  P FPE +GV ERD FY S+S+SGWGG+SGHDAPMIAYDA+LAA    W++L H    HGGD+DS+  IAG  +G M+GF+ VS  N+ ++E R RL      LY+L
Sbjct:    2 EKYVAAMVLSAAGDALGYYNGKWEFLQDGEKIHRQLAQLGGLDALDV--GRWRVSDDTVMHLATAEALVEAGKAPK----------LTQLYYLLAKHYQ-DCMEDMDGRAPGGASVHNAMQLKPGKPNGWRIPFNSHEGGCGAAMRAMCIGLRFPHHSQ---LDTLIQVSIESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEAKKYIVQSGYFVEENLQHWSYFQTKWENYLKLRGILDGESAPTFPESFGVKERDQFYTSLSYSGWGGSSGHDAPMIAYDAVLAAGD-SWKELAHRAFFHGGDSDSTAAIAGCWWGVMYGFKGVSPSNYEKLEYRNRLEETARALYSL 347
The following BLAST results are available for this feature:
BLAST of TCONS_00058498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADPRH2.398e-10050.14[Protein ADP-ribosylarginine] hydrolase OS=Homo sa... [more]
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