TCONS_00058497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058497
Unique NameTCONS_00058497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058497 ID=TCONS_00058497|Name=TCONS_00058497|organism=Clytia hemisphaerica|type=transcript|length=1394bp
TAATTAACCATTATTTTATTATGTTTTCAGCAAAAGTAAGATAATaaact
gaaaaaaagagaaacaaaaaTGGCTGGCAGTGATAAAATCCAAGAAGAAA
ATTATGTTGCAGCAATGGTTTTGGCAGGTGTTGGTGATGCTATGGGTTAC
AAATGTGGACAATGGGAATTTGATTTCGTCGGTGAGCATATTCACAAGGA
ATTAAAATCACTTGGTGGTGTCAAtaaactgaaaatcaaaacaccAGAAT
TCATGGTTAGTGATGATACTGTCTTGCTGTTATCTACGGCAGATTCTCTG
GTTGATAttggcaaaaagttgaaatctgGTAAAATTGTTGACGAAGGAGA
TTATTATAATAAGTTGTATGCGGAGTTTTCTTTTCGTTATCAAAATGATG
TCAGTAAAGATATGAATGGTAGAGCACCTGGTAATGGAACCATGGTGGCT
TGCCGCCAGATGCACCCGCTCCGCCCACACGGTTGGGAAATCCCCTTTAA
CTCGCGTGGTGGTGGGTGTGGTGCCGCTATGCGAGCTATGGCTATCGGGT
TGCGTTACCCAAATATGTCAGATTCAAAATGTATTGAGAATCTTATTCGA
GTCAGTGTCGAGAGTGGACGCATGACTCATAATTGTCCAACTGGGTATTT
AGGGTCGTTTGCTACGGCCCTGTTTGGTGCTTTTGCTGTTAGCAGAGTAC
CACTTATCCGATGGGGAAAATATTTAATCAAAGCGCTGCCCCATGTTCAA
CGCTATGTTGTAAAGGTAGGTCGTGATGTAGAAGATAATCAGAAGAATTG
GGCCTACTTTGGAGAACAATGGGCCAAATTTTTGGAAACCCGGGGCTTAA
CAAATGGAGATGGGTGGCCGAAATTTCCTGAGAAATATGGTGTTGCTGAA
CGAGATGCATTTTATAAGTCAGTTTCTTTCAGCGGTTGGGGTGGCGCAAG
TGGCCATGACGCACCTATGATTGCGTACGATGCGTTGCTAGCGGCCGATA
GCGGTGGTTGGGAAAAGCTCTGTCATCATGGTATGTTACATGGAGGGGAT
AACGATTCGTCTGGTGTGATTGCCGGATTCTGTTATGGTGCAATGCATGG
TTTTGAAGATGTGTCTAAAAAGAATCATGCTGAAGTGGAGAAAAGACTTC
GTCTGGTTGGTTGTGGTGAAGATTTGTACACGTTAGCGAAACCGTATATA
GAGGTAATGGGAGAAGAATATTTGTTTGAGGAAGCTATTGAACAGATTTT
TGGCGATGATTCTTTTATTTATCCCATTAGAAAAGAGTAGATTTTATTGT
GTCCTAAAACTGCTGGCTAGCTGTAGTTGAAATGCACTCATTTGTAATTT
CACTTTAATCACCAAATTGGCAGGGATTTTTctatacacttttt
Run BLAST on NCBI

protein sequence of TCONS_00058497-protein

>TCONS_00058497-protein ID=TCONS_00058497-protein|Name=TCONS_00058497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MAGSDKIQEENYVAAMVLAGVGDAMGYKCGQWEFDFVGEHIHKELKSLGG
VNKLKIKTPEFMVSDDTVLLLSTADSLVDIGKKLKSGKIVDEGDYYNKLY
AEFSFRYQNDVSKDMNGRAPGNGTMVACRQMHPLRPHGWEIPFNSRGGGC
GAAMRAMAIGLRYPNMSDSKCIENLIRVSVESGRMTHNCPTGYLGSFATA
LFGAFAVSRVPLIRWGKYLIKALPHVQRYVVKVGRDVEDNQKNWAYFGEQ
WAKFLETRGLTNGDGWPKFPEKYGVAERDAFYKSVSFSGWGGASGHDAPM
IAYDALLAADSGGWEKLCHHGMLHGGDNDSSGVIAGFCYGAMHGFEDVSK
KNHAEVEKRLRLVGCGEDLYTLAKPYIEVMGEEYLFEEAIEQIFGDDSFI
YPIRKE
Run BLAST on NCBI

transcript from alignment at scaffold_311:1272655..1274946+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058497 ID=TCONS_00058497|Name=TCONS_00058497|organism=Clytia hemisphaerica|type=transcript|length=2292bp|location=Sequence derived from alignment at scaffold_311:1272655..1274946+ (Clytia hemisphaerica)
TAATTAACCATTATTTTATTATGTTTTCAGCAAAAGTAAGATAATaaact
gaaaaaaagagaaacaaaaaTGGCTGGCAGTGATAAAATCCAAGAAGAAA
ATTATGTTGCAGCAATGGTTTTGGCAGGTGTTGGTGATGCTATGGGTTAC
AAATGTGGACAATGGGAATTTGATTTCGTCGGTGAGCATATTCACAAGGA
ATTAAAATCACTTGGTGGTGTCAAtaaactgaaaatcaaaacaccAGAAT
TCATGGTTAGTGATGATACTGTCTTGCTGTTATCTACGGCAGATTCTCTG
GTTGANTGACacctgttgggtccgtggaaaaGCTGATTAGTTACAAGTAG
CGTATTgaatgattttacgtcacttaccgccaatcagctgttgggtccgt
ggaaaacattgcagtggtgcatatcatgaatatcatagTGTACAGTTGGC
TTTATAATCTTTTCATACAGACTTTTTTAAGCTGTCAACTCTTATctagg
ctggacttaaaaaattgttggtttgccgtcacccgaccctagattttgga
ggtgggtcggtcggtcggaattttttatattttgacgatttatgaaattt
tcgtccatggaaggattaacagtttgtttacatttaggtaattttgaatg
gaaGAAGAGCGCTAGCAGGGAATTCACAATTTTTACGCTTGAGACAGACA
cgatacgagttttgatttgattgattgaaatctttgaagaaaaaaatttc
ttctttaaaatggcaataattttttttgagtcggcaggtttcgaggtagg
gtcggtcgggtgacggcaaaccaacattttttaagtccagccctAGGTTT
GCCACTTTTTGTGTCACCATATATGATATAACTTTCGTTATTCTTATTAA
CCAttattttattgtatttttagcaaaaataagaTAATATaccgagaaaa
aaaaaagagaaacaaaaaTGCCTGGCAATGATAAAATCCAAGAAGAAAAT
TATGTTGCAGCAATGGTTTTGGCAGGTGTTGGTGACGCTATGGGTTACAA
ATGTGGACAATGGGAATTTGATTTCGTCGGTGAGCATATTCACAAGGAAT
TAAAAGCACTTGGTGGTGTcaataaactaaaaatcaaaacatcagaATTC
ATGGTTAGTGATGATACTGTCTTGCTGTTATCTACGGCAGATTCTCTGGT
TACTAttggcaaaaagttgaaatctgGTAAAATTGTTGACGAAGGAGATT
ATTATAATAAGTTGTATGCGGAGTTTTCTTTTCGTTATCAAAATGATGTC
AGTAAAGATATGAATGGTAGAGCACCTGGTAATGGAACCATGGTGGCTTG
CCGCCAGATGCACCCGCTCCGCCCACACGGTTGGGAAATCCCCTTTAACT
CGCGTGGTGGTGGGTGTGGTGCCGCTATGCGAGCTATGGCTATCGGGTTG
CGTTACCCAAATATGTCAGATTCAAAATGTATTGAGAATCTTATTCGAGT
CAGTGTCGAGAGTGGACGCATGACTCATAATTGTCCAACTGGGTATTTAG
GGTCGTTTGCTACGGCCCTGTTTGGTGCTTTTGCTGTTAGCAGAGTACCA
CTTATCCGATGGGGAAAATATTTAATCAAAGCGCTGCCCCATGTTCAACG
CTATGTTGTAAAGGTAGGTCGTGATGTAGAAGATAATCAGAAGAATTGGG
CCTACTTTGGAGAACAATGGGCCAAATTTTTGGAAACCCGGGGCTTAACA
AATGGAGATGGGTGGCCGAAATTTCCTGAGAAATATGGTGTTGCTGAACG
AGATGCATTTTATAAGTCAGTTTCTTTCAGCGGTTGGGGTGGCGCAAGTG
GCCATGACGCACCTATGATTGCGTACGATGCGTTGCTAGCGGCCGATAGC
GGTGGTTGGGAAAAGCTCTGTCATCATGGTATGTTACATGGAGGGGATAA
CGATTCGTCTGGTGTGATTGCCGGATTCTGTTATGGTGCAATGCATGGTT
TTGAAGATGTGTCTAAAAAGAATCATGCTGAAGTGGAGAAAAGACTTCGT
CTGGTTGGTTGTGGTGAAGATTTGTACACGTTAGCGAAACCGTATATAGA
GGTAATGGGAGAAGAATATTTGTTTGAGGAAGCTATTGAACAGATTTTTG
GCGATGATTCTTTTATTTATCCCATTAGAAAAGAGTAGATTTTATTGTGT
CCTAAAACTGCTGGCTAGCTGTAGTTGAAATGCACTCATTTGTAATTTCA
CTTTAATCACCAAATTGGCAGGGATTTTTctatacacttttt

Coding sequence (CDS) from alignment at scaffold_311:1272655..1274946+

>TCONS_00058497 ID=TCONS_00058497|Name=TCONS_00058497|organism=Clytia hemisphaerica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_311:1272655..1274946+ (Clytia hemisphaerica)
aTGGCTGGCAGTGATAAAATCCAAGAAGAAAATTATGTTGCAGCAATGGT
TTTGGCAGGTGTTGGTGATGCTATGGGTTACAAATGTGGACAATGGGAAT
TTGATTTCGTCGGTGAGCATATTCACAAGGAATTAAAATCACTTGGTGGT
GTCAAtaaactgaaaatcaaaacaccAGAATTCATGGTTAGTGATGATAC
TGTCTTGCTGTTATCTACGGCAGATTCTCTGGTTGATAttggcaaaaagt
tgaaatctgGTAAAATTGTTGACGAAGGAGATTATTATAATAAGTTGTAT
GCGGAGTTTTCTTTTCGTTATCAAAATGATGTCAGTAAAGATATGAATGG
TAGAGCACCTGGTAATGGAACCATGGTGGCTTGCCGCCAGATGCACCCGC
TCCGCCCACACGGTTGGGAAATCCCCTTTAACTCGCGTGGTGGTGGGTGT
GGTGCCGCTATGCGAGCTATGGCTATCGGGTTGCGTTACCCAAATATGTC
AGATTCAAAATGTATTGAGAATCTTATTCGAGTCAGTGTCGAGAGTGGAC
GCATGACTCATAATTGTCCAACTGGGTATTTAGGGTCGTTTGCTACGGCC
CTGTTTGGTGCTTTTGCTGTTAGCAGAGTACCACTTATCCGATGGGGAAA
ATATTTAATCAAAGCGCTGCCCCATGTTCAACGCTATGTTGTAAAGGTAG
GTCGTGATGTAGAAGATAATCAGAAGAATTGGGCCTACTTTGGAGAACAA
TGGGCCAAATTTTTGGAAACCCGGGGCTTAACAAATGGAGATGGGTGGCC
GAAATTTCCTGAGAAATATGGTGTTGCTGAACGAGATGCATTTTATAAGT
CAGTTTCTTTCAGCGGTTGGGGTGGCGCAAGTGGCCATGACGCACCTATG
ATTGCGTACGATGCGTTGCTAGCGGCCGATAGCGGTGGTTGGGAAAAGCT
CTGTCATCATGGTATGTTACATGGAGGGGATAACGATTCGTCTGGTGTGA
TTGCCGGATTCTGTTATGGTGCAATGCATGGTTTTGAAGATGTGTCTAAA
AAGAATCATGCTGAAGTGGAGAAAAGACTTCGTCTGGTTGGTTGTGGTGA
AGATTTGTACACGTTAGCGAAACCGTATATAGAGGTAATGGGAGAAGAAT
ATTTGTTTGAGGAAGCTATTGAACAGATTTTTGGCGATGATTCTTTTATT
TATCCCATTAGAAAAGAGTAGaTGGCTGGCAGTGATAAAATCCAAGAAGA
AAATTATGTTGCAGCAATGGTTTTGGCAGGTGTTGGTGATGCTATGGGTT
ACAAATGTGGACAATGGGAATTTGATTTCGTCGGTGAGCATATTCACAAG
GAATTAAAATCACTTGGTGGTGTCAAtaaactgaaaatcaaaacaccAGA
ATTCATGGTTAGTGATGATACTGTCTTGCTGTTATCTACGGCAGATTCTC
TGGTTGATAttggcaaaaagttgaaatctgGTAAAATTGTTGACGAAGGA
GATTATTATAATAAGTTGTATGCGGAGTTTTCTTTTCGTTATCAAAATGA
TGTCAGTAAAGATATGAATGGTAGAGCACCTGGTAATGGAACCATGGTGG
CTTGCCGCCAGATGCACCCGCTCCGCCCACACGGTTGGGAAATCCCCTTT
AACTCGCGTGGTGGTGGGTGTGGTGCCGCTATGCGAGCTATGGCTATCGG
GTTGCGTTACCCAAATATGTCAGATTCAAAATGTATTGAGAATCTTATTC
GAGTCAGTGTCGAGAGTGGACGCATGACTCATAATTGTCCAACTGGGTAT
TTAGGGTCGTTTGCTACGGCCCTGTTTGGTGCTTTTGCTGTTAGCAGAGT
ACCACTTATCCGATGGGGAAAATATTTAATCAAAGCGCTGCCCCATGTTC
AACGCTATGTTGTAAAGGTAGGTCGTGATGTAGAAGATAATCAGAAGAAT
TGGGCCTACTTTGGAGAACAATGGGCCAAATTTTTGGAAACCCGGGGCTT
AACAAATGGAGATGGGTGGCCGAAATTTCCTGAGAAATATGGTGTTGCTG
AACGAGATGCATTTTATAAGTCAGTTTCTTTCAGCGGTTGGGGTGGCGCA
AGTGGCCATGACGCACCTATGATTGCGTACGATGCGTTGCTAGCGGCCGA
TAGCGGTGGTTGGGAAAAGCTCTGTCATCATGGTATGTTACATGGAGGGG
ATAACGATTCGTCTGGTGTGATTGCCGGATTCTGTTATGGTGCAATGCAT
GGTTTTGAAGATGTGTCTAAAAAGAATCATGCTGAAGTGGAGAAAAGACT
TCGTCTGGTTGGTTGTGGTGAAGATTTGTACACGTTAGCGAAACCGTATA
TAGAGGTAATGGGAGAAGAATATTTGTTTGAGGAAGCTATTGAACAGATT
TTTGGCGATGATTCTTTTATTTATCCCATTAGAAAAGAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036855XLOC_036855Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058497-proteinTCONS_00058497-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058497-exon-scaffold_311-1491911889:1272655..1272959TCONS_00058497-exon-scaffold_311-1491911889:1272655..1272959Clytia hemisphaericaexon
TCONS_00058497-exon-scaffold_311-1510915933:1272655..1272959TCONS_00058497-exon-scaffold_311-1510915933:1272655..1272959Clytia hemisphaericaexon
TCONS_00058497-exon-scaffold_311-1575043694:1272655..1272959TCONS_00058497-exon-scaffold_311-1575043694:1272655..1272959Clytia hemisphaericaexon
TCONS_00058497-exon-scaffold_311-1491911889:1273858..1274946TCONS_00058497-exon-scaffold_311-1491911889:1273858..1274946Clytia hemisphaericaexon
TCONS_00058497-exon-scaffold_311-1510915933:1273858..1274946TCONS_00058497-exon-scaffold_311-1510915933:1273858..1274946Clytia hemisphaericaexon
TCONS_00058497-exon-scaffold_311-1575043694:1273858..1274946TCONS_00058497-exon-scaffold_311-1575043694:1273858..1274946Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1272655..1274946 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.25027	5.26726	5.48242	9.09833	8.54221	5.79777	6.01662	5.12803	7.13784	6.29602	3.9085	3.85485	4.69195	3.07382	5.58349	9.34396	8.46743	9.45153	9.4673	11.3247	6.1037	7.37389	3.3565	5.57109	0	0	4.39842	2.18475	7.42335	4.58799
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005502Ribosyl_crysJ1
Blast
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BLAST of TCONS_00058497 vs. Swiss-Prot (Human)
Match: ADPRH ([Protein ADP-ribosylarginine] hydrolase OS=Homo sapiens GN=ADPRH PE=1 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.953e-100
Identity = 182/363 (50.14%), Postives = 250/363 (68.87%), Query Frame = 1 
Query:   97 ENYVAAMVLAGVGDAMGYKCGQWEFDFVGEHIHKELKSLGGVNKLKIKTPEFMVSDDTVLLLSTADSLVDIGKKLKSGKIVDEGDYYNKLYAEFSFRYQNDVSKDMNGRAPGNGTMVACRQMHPLRPHGWEIPFNSXXXXXXXXXXXXXIGLRYPNMSDSKCIENLIRVSVESGRMTHNCPTGYLGSFATALFGAFAVSRVPLIRWGKYLIKALPHVQRYVVKVGRDVEDNQKNWAYFGEQWAKFLETRGLTNGDGWPKFPEKYGVAERDAFYKSVSFSGWGGASGHDAPMIAYDALLAADSGGWEKLCHHGMLHGGDNDSSGVIAGFCYGAMHGFEDVSKKNHAEVEKRLRLVGCGEDLYTL 1185
            E YVAAMVL+  GDA+GY  G+WEF   GE IH++L  LGG++ L +    + VSDDTV+ L+TA++LV+ GK  K            +LY   +  YQ D  +DM+GRAPG  ++    Q+ P +P+GW IPFNS  GGCGAAMRAM IGLR+P+ S    ++ LI+VS+ESGRMTH+ PTGYLG+ A+ALF A+AV+  P ++WGK L++ LP  ++Y+V+ G  VE+N ++W+YF  +W  +L+ RG+ +G+  P FPE +GV ERD FY S+S+SGWGG+SGHDAPMIAYDA+LAA    W++L H    HGGD+DS+  IAG  +G M+GF+ VS  N+ ++E R RL      LY+L
Sbjct:    2 EKYVAAMVLSAAGDALGYYNGKWEFLQDGEKIHRQLAQLGGLDALDVG--RWRVSDDTVMHLATAEALVEAGKAPK----------LTQLYYLLAKHYQ-DCMEDMDGRAPGGASVHNAMQLKPGKPNGWRIPFNSHEGGCGAAMRAMCIGLRFPHHSQ---LDTLIQVSIESGRMTHHHPTGYLGALASALFTAYAVNSRPPLQWGKGLMELLPEAKKYIVQSGYFVEENLQHWSYFQTKWENYLKLRGILDGESAPTFPESFGVKERDQFYTSLSYSGWGGSSGHDAPMIAYDAVLAAGD-SWKELAHRAFFHGGDSDSTAAIAGCWWGVMYGFKGVSPSNYEKLEYRNRLEETARALYSL 347
The following BLAST results are available for this feature:
BLAST of TCONS_00058497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADPRH1.953e-10050.14[Protein ADP-ribosylarginine] hydrolase OS=Homo sa... [more]
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