TCONS_00058495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058495
Unique NameTCONS_00058495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2343

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058495 ID=TCONS_00058495|Name=TCONS_00058495|organism=Clytia hemisphaerica|type=transcript|length=2343bp
attgttttttctgtttttttctggCTTTAAGTTCTTTGTAAATATATGAT
AAAAATTTCTTATGATTTTTTAGTTGataatattatatatattatgCTAT
ATACTTGATATATGGCTAGATTACACCGACACTGAAATTGACGTATaaat
aaaagagtttaaaaaatgctgatGTTCCCTCATTTGTTTTGAATGATAGT
AATGACCACTATACAACACTTGAAACACTACTAACATTTATAAACACCAC
TATAAACATTTGAATTTGGTTGGAATATCCAGTGTTGCAAATAAAGTCAG
TTATTTTTTAGCTGTTTCCACCTTAAAACTAGTATTTGAAATATGAtgga
attttccaaatttttactaTCAATATACACTACACACatccctaaaatag
cttttgtTATGAGGAAACACCACATTCGCCGTATCAGTTCTTCCtccatt
ttttgcaattttaagtTTCTGTTACAGACTCTATACTGTACACATTGCTA
TTAAATTCTCTAaagctttttatgaaaattgaacaACATAATGCCTGAAG
GACCTGAGCATTTCAAGGCAGCTGCTTTTATCAATAAACATTGTCAAGAT
AGATCTTTCACTGGGAAGATAGTAAAATCTGAAGTCAATCATCGTAATCC
TGAAATTGATTGTCAATATGAGACTTACACAGTATCAGCAAAAGCACGTG
GAAAAGAAGTGATGGTTACGGTTACAAATCTAACATTAGATGAGAAGAAA
CAACAGTCCATAAAGAAAAAAGGAATTGTGAAACTTGAaccagttgaaaa
taaatcagaaCATTTCAGCATTGTTTTTCGATTTGGAATGTCTGGCTGCT
TTAGGTTTACTGATGCAGATAATCTACCCAAGCATTCACATTTACGCTTT
TTCAGTATTGATGGAATGGTTCTTTCATTTGAAGATGTTCGCAGATTTGG
GAAATGGAAATTAACAGATACTTTTTCAGCAGACAGAGGACCTGACCCAG
TTTATGAATACATTGACTTTCGAAAAAATGTCCTCAACAACATCAAAaac
cgaatatttcaaaaatctatcTGTGAGCTATTAcataatcaaaaatattt
caatggcATTGGGAATTATTTGAGAGCAGAAATCTTATACAGATGTAAGA
TACCTCCGTTTACAAAATCATTTGATGTATTTGAAAACTTGGCAATTGAA
AAGGAAGAACCAAAGAGAAAAGCAAAGgGAAATGATGgtgattttgacat
tttagaaTATTGTTCATTAGTTCCGTTTGAGGTGATGGTGCTTGAAGGTG
GAGGCTATGATAAATCAGAAAAGGATTCAGAttattcacttttcgaaaac
tGGTTACAGTGTTATTATAACAAGGACATGAACAACCTTGTAGACCATGA
TGGAAGAACAATGTGGTTTCAGggtGAACCAGGACCTTTAGTTCCGACAG
GGGAGAAAGCCAAAGCTAGACATAATGCAAAGGTTATAGTGCCTACAGAA
GACAATAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAACACTAAGAAAAA
GGCCGAGAGTAAAAGGTCCTTGACAAAAGGTCATGTCCAGCCAAAGAAAA
AGCTTGCACATGGACGTAAGAAAGGTAATATTAAGAAGGAAGAAAATGCA
GATCTTGTCGAAGAGTGTGATAACAAAGATTCCAGCAAGACCCCCACATC
TTTAAAAAGTACTAAGAAAAAAGGGCCTGGGAACCGCAAGAGATCTATTA
AGCACGAAAGAGGCAAGATTGAGGCTACAGATGTTGAAGTGAAAGatgaa
aaagtaattaaaattgatgatagTCATTTACGAAGAAGCTCTAGATTGAA
GAAATGAAATTTCAGGGGACAATCTTTGTAACCATTCTGGCGGTCATTTT
AtgccaaaaatatataaaggtGCGTCATGATGTTACACATTTATTTCCTA
TCAGCTCATTTTTGAAAGGCTAAACGATATTTATTGAATCACAACAGGCA
TATTTTGATCTCATACAAACATGGTAAACCTTGGTAAAACTGGGAATCCT
GGTAACCTGTGCTAAGGATTGATGGTTATGTTGTattatagtatttttta
agaCCAACACTTTCAAAAAGCCTAACATTTTGTatcataatattttttaa
actgtATAGCTTGGGTACTGTTTCTATtagtttttgtttatatttttctt
gtaagGTAGAGGTtgccctaaaaatgaaagtgataactgattattagcat
gtttttccctattttattgatattttgTTTTCTCCATCATGCAAAGCTAT
GTTACTAAATTTATTGTTCTGAGTATTTGAATATAGTAATAAG
Run BLAST on NCBI

protein sequence of TCONS_00058495-protein

>TCONS_00058495-protein ID=TCONS_00058495-protein|Name=TCONS_00058495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=438bp
MPEGPEHFKAAAFINKHCQDRSFTGKIVKSEVNHRNPEIDCQYETYTVSA
KARGKEVMVTVTNLTLDEKKQQSIKKKGIVKLEPVENKSEHFSIVFRFGM
SGCFRFTDADNLPKHSHLRFFSIDGMVLSFEDVRRFGKWKLTDTFSADRG
PDPVYEYIDFRKNVLNNIKNRIFQKSICELLHNQKYFNGIGNYLRAEILY
RCKIPPFTKSFDVFENLAIEKEEPKRKAKGNDGDFDILEYCSLVPFEVMV
LEGGGYDKSEKDSDYSLFENWLQCYYNKDMNNLVDHDGRTMWFQGEPGPL
VPTGEKAKARHNAKVIVPTEDNKKKTKEKSKKNTKKKAESKRSLTKGHVQ
PKKKLAHGRKKGNIKKEENADLVEECDNKDSSKTPTSLKSTKKKGPGNRK
RSIKHERGKIEATDVEVKDEKVIKIDDSHLRRSSRLKK
Run BLAST on NCBI

transcript from alignment at scaffold_311:1263566..1269760+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058495 ID=TCONS_00058495|Name=TCONS_00058495|organism=Clytia hemisphaerica|type=transcript|length=6195bp|location=Sequence derived from alignment at scaffold_311:1263566..1269760+ (Clytia hemisphaerica)
attgttttttctgtttttttctggCTTTAAGTTCTTTGTAAATATATGAT
AAAAATTTCTTATGATTTTTTAGTTGataatattatatatattatgCTAT
ATACTTGATATATGGCTAGATTACACCGACACTGAAATTGACGTATaaat
aaaagagtttaaaaaatgctgatGTTCCCTCATTTGTTTTGAATGATAGT
AATGACCACTATACAACACTTGAAACACTACTAACATTTATAAACACCAC
TATAAACATTTGAATTTGGTTGGAATATCCAGTGTTGCAAATAAAGTCAG
TTATTTTTTAGCTGTTTCCACCTTAAAACTAGTATTTGAAATATGAtgga
attttccaaatttttactaTCAATATACACTACACACatccctaaaatag
cttttgtTATGAGGAAACACCACATTCGCCGTATCAGTTCTTCCtccatt
ttttgcaattttaagtTTCTGTTACAGACTCTATACTGTACACATTGCTA
TTAAATTCTCTAaagctttttatgaaaattgaacaACATAATGCCTGAAG
GACCTGAGCATTTCAAGGCAGCTGCTTTTATCAATAAACATTGTCAAGAT
AGATCTTTCACTGGGAAGATAGTAAAATCTGAAGTCAATCATCGTAATCC
TGAAATTGATTGTCAATATGAGACTTACACAGTATCAGCAAAAGCACGTG
GAAAAGAAGTGATGGTTACGGTTACAAATCTAACATTAGATGAGAAGAAA
CAACAGTCCATAAAGAAAAAAGGAATTGTGAAACTTGAaccagttgaaaa
taaatcagaaCATTTCAGCATTGTTTTTCGATTTGGAATGTCTGGCTGCT
TTAGGTTTACTGATGCAGATAATCTACCCAAGCATTCACATTTACGCTTT
TTCAGTATTGATGGAATGGTTCTTTCATTTGAAGATGTTCGCAGGTAAAT
AATATTAATTTTTACTGATATTTGTAAAATTCCGGCCTTACTAAAGTAAT
ACAATTTACAGGAAGAAAGTCTAATTAATTCTCAAATAATTTTGTAAATA
GCTTTATAAAGTTTCTTACTAAAGcctttttcacatgtacgtcaaatttt
acttaagaccttgaatagtggggaatttccctaagctaacgtagtgtttt
aaggccttatgtagagtttgcttacgttcaaaaagttttgaacggaagga
aaagtcacgtaagaccctcttaataacaaaaactctacataatgtcgggg
aaattcccaaaagacagccttacaAACGATTTACCCtaaggtctaaagta
aaattttacgtgcatgtgaaaaaagcttaaaagaGTAATTTTTTAGTGAC
TTTTTTCCCTTTCATCTTAGATTTGGGAAATGGAAATTAACAGATACTTT
TTCAGCAGACAGAGGACCTGACCCAGTTTATGAATACATTGACTTTCGAA
AAAATGTCCTCAACAACATCAAAaaccgaatatttcaaaaatctatcTGT
GAGCTATTAcataatcaaaaatatttcaatggcATTGGGAATTATTTGAG
AGCAGAAATCTTATACAGGTGAAACATTTTAAATCAAGAAATTTGCTAGG
GCAATAAGATTTCTGATTATAATAGCTGTTACCTTTTTTTGGTTTGGTTT
AAGATTTGTTGAACCACGTGAAAAAGAATGTGGTTATTAAATTTTTCCCA
TAAATTAATTAATCCCATTAATTTTGTTGATTATTATAGATGTAAGATAC
CTCCGTTTACAAAATCATTTGATGTATTTGAAAACTTGGCAATTGAAAAG
GAAGAACCAAAGAGAAAAGCAAAGGTTGAGTTTTTTTGTtcatgggcccc
ggcgagccattttgagtgagggggccaatattttggaaaaaaatgtcgcc
caccatggttgggcgacgaaaaTTTTTCGGTTTGTGTGGTctgatttggt
ctcaaaccagcttaaaatagtaactcttaaaaacgtatgacatAGTCTAC
CAAAAAGTGGGGGGCCATGGACCCCCCGGCCCCCCCGTTGACGGGGCCCA
TGTTGTTATATATGTTATTGTTCTATTCTTGATAAGCGATTATCGTAATT
TGTTTATTCCAGTTTAANcgtatagagaggggcgccaaaaacaaaaaatc
tttaaaaagggcgccatatttgccttggccaccccagagacattttccca
ccacgccactgctaGTTTCATAGCCCTGGGGGACAGCACTCGATTAAAAA
ACGACTGTAACTGCGGACCAAGATTAGGCGTTTGAAGTTGGAACCTTTGA
GGAATTTCGGACAAAGATTTTAGGAAATTCGGACAAAAATTTACCCTTAA
Ggtgtattttttttatcttttgaccattttaaggcaaaatatggtcagat
tagCCAGATTTTACATCCTTATNAGCAATCTTCTATCAAATGTCAGGCAA
AATAtgaaacgcaaaaaatctctCTCTAACAAGGTTGATTTTAATAAATC
CTTCGGActaaaaaaagggttaaaaGTAAAGAAAGCTTTTAGCTCTAAcc
tgaattttaatttttttttttgatttatattaacatttcattttttcttc
aggGAAATGATGgtgattttgacattttagaaTATTGTTCATTAGTTCCG
TTTGAGGTGATGGTGCTTGGTAAGAACTAACGAGTAACATTGCTTCTCGT
TTGACTTTACTGAAGTTGTTATACTAGTAtccagtggcgtggtggcaggg
ggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNctataatttttct
taagccattaagtttacaattgggcctacgaatgatttcaaagatactga
agttgagccagtgcggttagcacgttcgacagttatAATATATTAGGCAA
ATTCCATTAAAACCGATCTGAATAtgcaatttttgtaaaaagttttcaaa
ctaaaagtataagtttattgaaaaaagtTGATAATCGTTTATGTTGTTAT
TTTTCTCATAGAAGGTGGAGGCTATGATAAATCAGAAAAGGATTCAGAtt
attcacttttcgaaaactGGTTACAGTGTTATTATAACAAGGACATGAAC
AACCTTGTAGACCATGATGGAAGAACAATGTGGTTTCAGGTGATACCTTT
TAGTAGCTCTTGTATTTCGATTAAAGATAATTTACCAGTCGAAAAGAACA
ACACCTCTTATGTCAATATTTTGGCATCACATCTTCTTCAAGATGATTGA
GTTTATACATCAGAATTTAGTTTCCAAAGGCGTAGAATTTCAATATTACT
GGTCTACTGTACTTTAAATATAGGAGTGTATTGTATTCTAGAGTTTCGCC
TGGAAGAGATGAAGCTGCTTCATCTTGAGTTTTACCATTAACGTTTTGCA
GATTCTCAGAAATTTAATTGCAAGTTaacattattttcaatttatgtatt
ttttgtatgttttcttttttagggtGAACCAGGACCTTTAGTTCCGACAG
GTAAAGATATTTTATGGTGCTTTTTAGCATTTGCCCTAAAATCATAATCA
GTACAAAAAACCCTGGTCTTGAAGCTTATTGCTTTAACCTTTAATTAGAT
TTTTCCTTTGTCAATAACAAAAGATAAAAGTGGATTTGCTCAGTTTTGGA
TCGTTACCAAATAAAAACACTCCTCTTGGGTTTGGCTCAAAATTTAATCA
CATTTTGATTCTAAATTAAATCAAACTAAATCGGCAATGCAAGTTTAGGT
TATAAACAATATAGAGGAAACAAACCATGACTTTTTCTACGGACTTTtct
gaaatgaatttaaaaaagtctTATTGATTTTTACTAAAAGGAATGACTCG
CAAATGGCtcgcattttttgaaattaaaaaaatctagGTCTCATCTTAAC
TGTTTCTCATTGTATGAGAAGATAATTATTATCTACTTGATCTCTTTTTA
GGGGAGAAAGCCAAAGCTAGACATAATGCAAAGGTTATAGTAAGTTCAAT
ATTGCATACTTGTAATTATAAATGATCAGAATATGTGTTGCTTATGTGTT
AAGGAAAAGCACTGATCTCTGACTACTTGACTAGATTGGGCTTCATTTTC
CCTTTATAATAGGAGGTGTGTAAAGCTTTCTTGAGCTGATTAGTCTACCA
TGTTTCTTTACTTGTTGTCAAAAGTGGgattcaaatgtttttaaattgaa
acgTTTGAGAATGTGATGTAAAACAAAAGACAACATGGCTGACAAGTCGA
CTTTAATACTGGATACACTTCCACAGGAATTTTGTAAGCCCTTTTAGCCT
ATGTAGTGTGTAAAGGAATACGGtgagtgaaaagaaaaaaaacggtGGCT
TGCTTCAAAAAGAAACAGACTATGATATAAACAACATCAGAGTTGATCTA
AGCactttgaattgtttttcaCTATTTTCATACTTGATAGGTGCCTACAG
AAGACAATAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAACACTAAGAAA
AAGGCCGAGAGTAAAAGGTCCTTGACAAAAGGTCATGTCCAGCCAAAGAA
AAAGCTTGCACATGGACGTAAGAAAGGTAATATTAAGAAGGAAGAAAATG
CAGATCTTGTCGAAGAGTGTGATAACAAAGATTCCAGCAAGACCCCCACA
TCTTTAAAAAGTACTAAGAAAAAAGGGCCTGGGAACCGCAAGAGATCTAT
TAAGCACGAAAGAGGCAAGATTGAGGCTACAGATGTTGAAGTGAAAGatg
aaaaagtaattaaaattgatgatagTCATTTACGAAGAAGCTCTAGATTG
AAGAAATGAAATTTCAGGGGACAATCTTTGTAACCATTCTGGCGGTCATT
TTAtgccaaaaatatataaaggtGCGTCATGATGTTACACATTTATTTCC
TATCAGCTCATTTTTGAAAGGCTAAACGATATTTATTGAATCACAACAGG
CATATTTTGATCTCATACAAACATGGTAAACCTTGGTAAAACTGGGAATC
CTGGTAACCTGTGCTAAGGATTGATGGTTATGTTGTattatagtattttt
taagaCCAACACTTTCAAAAAGCCTAACATTTTGTatcataatatttttt
aaactgtATAGCTTGGGTACTGTTTCTATtagtttttgtttatatttttc
ttgtaagGTAGAGGTtgccctaaaaatgaaagtgataactgattattagc
atgtttttccctattttattgatattttgTTTTCTCCATCATGCAAAGCT
ATGTTACTAAATTTATTGTTCTGAGTATTTGAATATAGTAATAAG

Coding sequence (CDS) from alignment at scaffold_311:1263566..1269760+

>TCONS_00058495 ID=TCONS_00058495|Name=TCONS_00058495|organism=Clytia hemisphaerica|type=CDS|length=10536bp|location=Sequence derived from alignment at scaffold_311:1263566..1269760+ (Clytia hemisphaerica)
ATGCCTGAAGGACCTGAGCATTTCAAGGCAGCTGCTTTTATCAATAAACA
TTGTCAAGATAGATCTTTCACTGGGAAGATAGTAAAATCTGAAGTCAATC
ATCGTAATCCTGAAATTGATTGTCAATATGAGACTTACACAGTATCAGCA
AAAGCACGTGGAAAAGAAGTGATGGTTACGGTTACAAATCTAACATTAGA
TGAGAAGAAACAACAGTCCATAAAGAAAAAAGGAATTGTGAAACTTGAac
cagttgaaaataaatcagaaCATTTCAGCATTGTTTTTCGATTTGGAATG
TCTGGCTGCTTTAGGTTTACTGATGCAGATAATCTACCCAAGCATTCACA
TTTACGCTTTTTCAGTATTGATGGAATGGTTCTTTCATTTGAAGATGTTC
GCAGATTTGGGAAATGGAAATTAACAGATACTTTTTCAGCAGACAGAGGA
CCTGACCCAGTTTATGAATACATTGACTTTCGAAAAAATGTCCTCAACAA
CATCAAAaaccgaatatttcaaaaatctatcTGTGAGCTATTAcataatc
aaaaatatttcaatggcATTGGGAATTATTTGAGAGCAGAAATCTTATAC
AGATGTAAGATACCTCCGTTTACAAAATCATTTGATGTATTTGAAAACTT
GGCAATTGAAAAGGAAGAACCAAAGAGAAAAGCAAAGgGAAATGATGgtg
attttgacattttagaaTATTGTTCATTAGTTCCGTTTGAGGTGATGGTG
CTTGAAGGTGGAGGCTATGATAAATCAGAAAAGGATTCAGAttattcact
tttcgaaaactGGTTACAGTGTTATTATAACAAGGACATGAACAACCTTG
TAGACCATGATGGAAGAACAATGTGGTTTCAGggtGAACCAGGACCTTTA
GTTCCGACAGGGGAGAAAGCCAAAGCTAGACATAATGCAAAGGTTATAGT
GCCTACAGAAGACAATAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAACA
CTAAGAAAAAGGCCGAGAGTAAAAGGTCCTTGACAAAAGGTCATGTCCAG
CCAAAGAAAAAGCTTGCACATGGACGTAAGAAAGGTAATATTAAGAAGGA
AGAAAATGCAGATCTTGTCGAAGAGTGTGATAACAAAGATTCCAGCAAGA
CCCCCACATCTTTAAAAAGTACTAAGAAAAAAGGGCCTGGGAACCGCAAG
AGATCTATTAAGCACGAAAGAGGCAAGATTGAGGCTACAGATGTTGAAGT
GAAAGatgaaaaagtaattaaaattgatgatagTCATTTACGAAGAAGCT
CTAGATTGAAGAAATGAATGCCTGAAGGACCTGAGCATTTCAAGGCAGCT
GCTTTTATCAATAAACATTGTCAAGATAGATCTTTCACTGGGAAGATAGT
AAAATCTGAAGTCAATCATCGTAATCCTGAAATTGATTGTCAATATGAGA
CTTACACAGTATCAGCAAAAGCACGTGGAAAAGAAGTGATGGTTACGGTT
ACAAATCTAACATTAGATGAGAAGAAACAACAGTCCATAAAGAAAAAAGG
AATTGTGAAACTTGAaccagttgaaaataaatcagaaCATTTCAGCATTG
TTTTTCGATTTGGAATGTCTGGCTGCTTTAGGTTTACTGATGCAGATAAT
CTACCCAAGCATTCACATTTACGCTTTTTCAGTATTGATGGAATGGTTCT
TTCATTTGAAGATGTTCGCAGATTTGGGAAATGGAAATTAACAGATACTT
TTTCAGCAGACAGAGGACCTGACCCAGTTTATGAATACATTGACTTTCGA
AAAAATGTCCTCAACAACATCAAAaaccgaatatttcaaaaatctatcTG
TGAGCTATTAcataatcaaaaatatttcaatggcATTGGGAATTATTTGA
GAGCAGAAATCTTATACAGATGTAAGATACCTCCGTTTACAAAATCATTT
GATGTATTTGAAAACTTGGCAATTGAAAAGGAAGAACCAAAGAGAAAAGC
AAAGgGAAATGATGgtgattttgacattttagaaTATTGTTCATTAGTTC
CGTTTGAGGTGATGGTGCTTGAAGGTGGAGGCTATGATAAATCAGAAAAG
GATTCAGAttattcacttttcgaaaactGGTTACAGTGTTATTATAACAA
GGACATGAACAACCTTGTAGACCATGATGGAAGAACAATGTGGTTTCAGg
gtGAACCAGGACCTTTAGTTCCGACAGGGGAGAAAGCCAAAGCTAGACAT
AATGCAAAGGTTATAGTGCCTACAGAAGACAATAAAAAGAAGACAAAAGA
AAAGAGCAAGAAAAACACTAAGAAAAAGGCCGAGAGTAAAAGGTCCTTGA
CAAAAGGTCATGTCCAGCCAAAGAAAAAGCTTGCACATGGACGTAAGAAA
GGTAATATTAAGAAGGAAGAAAATGCAGATCTTGTCGAAGAGTGTGATAA
CAAAGATTCCAGCAAGACCCCCACATCTTTAAAAAGTACTAAGAAAAAAG
GGCCTGGGAACCGCAAGAGATCTATTAAGCACGAAAGAGGCAAGATTGAG
GCTACAGATGTTGAAGTGAAAGatgaaaaagtaattaaaattgatgatag
TCATTTACGAAGAAGCTCTAGATTGAAGAAATGAATGCCTGAAGGACCTG
AGCATTTCAAGGCAGCTGCTTTTATCAATAAACATTGTCAAGATAGATCT
TTCACTGGGAAGATAGTAAAATCTGAAGTCAATCATCGTAATCCTGAAAT
TGATTGTCAATATGAGACTTACACAGTATCAGCAAAAGCACGTGGAAAAG
AAGTGATGGTTACGGTTACAAATCTAACATTAGATGAGAAGAAACAACAG
TCCATAAAGAAAAAAGGAATTGTGAAACTTGAaccagttgaaaataaatc
agaaCATTTCAGCATTGTTTTTCGATTTGGAATGTCTGGCTGCTTTAGGT
TTACTGATGCAGATAATCTACCCAAGCATTCACATTTACGCTTTTTCAGT
ATTGATGGAATGGTTCTTTCATTTGAAGATGTTCGCAGATTTGGGAAATG
GAAATTAACAGATACTTTTTCAGCAGACAGAGGACCTGACCCAGTTTATG
AATACATTGACTTTCGAAAAAATGTCCTCAACAACATCAAAaaccgaata
tttcaaaaatctatcTGTGAGCTATTAcataatcaaaaatatttcaatgg
cATTGGGAATTATTTGAGAGCAGAAATCTTATACAGATGTAAGATACCTC
CGTTTACAAAATCATTTGATGTATTTGAAAACTTGGCAATTGAAAAGGAA
GAACCAAAGAGAAAAGCAAAGgGAAATGATGgtgattttgacattttaga
aTATTGTTCATTAGTTCCGTTTGAGGTGATGGTGCTTGAAGGTGGAGGCT
ATGATAAATCAGAAAAGGATTCAGAttattcacttttcgaaaactGGTTA
CAGTGTTATTATAACAAGGACATGAACAACCTTGTAGACCATGATGGAAG
AACAATGTGGTTTCAGggtGAACCAGGACCTTTAGTTCCGACAGGGGAGA
AAGCCAAAGCTAGACATAATGCAAAGGTTATAGTGCCTACAGAAGACAAT
AAAAAGAAGACAAAAGAAAAGAGCAAGAAAAACACTAAGAAAAAGGCCGA
GAGTAAAAGGTCCTTGACAAAAGGTCATGTCCAGCCAAAGAAAAAGCTTG
CACATGGACGTAAGAAAGGTAATATTAAGAAGGAAGAAAATGCAGATCTT
GTCGAAGAGTGTGATAACAAAGATTCCAGCAAGACCCCCACATCTTTAAA
AAGTACTAAGAAAAAAGGGCCTGGGAACCGCAAGAGATCTATTAAGCACG
AAAGAGGCAAGATTGAGGCTACAGATGTTGAAGTGAAAGatgaaaaagta
attaaaattgatgatagTCATTTACGAAGAAGCTCTAGATTGAAGAAATG
AATGCCTGAAGGACCTGAGCATTTCAAGGCAGCTGCTTTTATCAATAAAC
ATTGTCAAGATAGATCTTTCACTGGGAAGATAGTAAAATCTGAAGTCAAT
CATCGTAATCCTGAAATTGATTGTCAATATGAGACTTACACAGTATCAGC
AAAAGCACGTGGAAAAGAAGTGATGGTTACGGTTACAAATCTAACATTAG
ATGAGAAGAAACAACAGTCCATAAAGAAAAAAGGAATTGTGAAACTTGAa
ccagttgaaaataaatcagaaCATTTCAGCATTGTTTTTCGATTTGGAAT
GTCTGGCTGCTTTAGGTTTACTGATGCAGATAATCTACCCAAGCATTCAC
ATTTACGCTTTTTCAGTATTGATGGAATGGTTCTTTCATTTGAAGATGTT
CGCAGATTTGGGAAATGGAAATTAACAGATACTTTTTCAGCAGACAGAGG
ACCTGACCCAGTTTATGAATACATTGACTTTCGAAAAAATGTCCTCAACA
ACATCAAAaaccgaatatttcaaaaatctatcTGTGAGCTATTAcataat
caaaaatatttcaatggcATTGGGAATTATTTGAGAGCAGAAATCTTATA
CAGATGTAAGATACCTCCGTTTACAAAATCATTTGATGTATTTGAAAACT
TGGCAATTGAAAAGGAAGAACCAAAGAGAAAAGCAAAGgGAAATGATGgt
gattttgacattttagaaTATTGTTCATTAGTTCCGTTTGAGGTGATGGT
GCTTGAAGGTGGAGGCTATGATAAATCAGAAAAGGATTCAGAttattcac
ttttcgaaaactGGTTACAGTGTTATTATAACAAGGACATGAACAACCTT
GTAGACCATGATGGAAGAACAATGTGGTTTCAGggtGAACCAGGACCTTT
AGTTCCGACAGGGGAGAAAGCCAAAGCTAGACATAATGCAAAGGTTATAG
TGCCTACAGAAGACAATAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAAC
ACTAAGAAAAAGGCCGAGAGTAAAAGGTCCTTGACAAAAGGTCATGTCCA
GCCAAAGAAAAAGCTTGCACATGGACGTAAGAAAGGTAATATTAAGAAGG
AAGAAAATGCAGATCTTGTCGAAGAGTGTGATAACAAAGATTCCAGCAAG
ACCCCCACATCTTTAAAAAGTACTAAGAAAAAAGGGCCTGGGAACCGCAA
GAGATCTATTAAGCACGAAAGAGGCAAGATTGAGGCTACAGATGTTGAAG
TGAAAGatgaaaaagtaattaaaattgatgatagTCATTTACGAAGAAGC
TCTAGATTGAAGAAATGAATGCCTGAAGGACCTGAGCATTTCAAGGCAGC
TGCTTTTATCAATAAACATTGTCAAGATAGATCTTTCACTGGGAAGATAG
TAAAATCTGAAGTCAATCATCGTAATCCTGAAATTGATTGTCAATATGAG
ACTTACACAGTATCAGCAAAAGCACGTGGAAAAGAAGTGATGGTTACGGT
TACAAATCTAACATTAGATGAGAAGAAACAACAGTCCATAAAGAAAAAAG
GAATTGTGAAACTTGAaccagttgaaaataaatcagaaCATTTCAGCATT
GTTTTTCGATTTGGAATGTCTGGCTGCTTTAGGTTTACTGATGCAGATAA
TCTACCCAAGCATTCACATTTACGCTTTTTCAGTATTGATGGAATGGTTC
TTTCATTTGAAGATGTTCGCAGATTTGGGAAATGGAAATTAACAGATACT
TTTTCAGCAGACAGAGGACCTGACCCAGTTTATGAATACATTGACTTTCG
AAAAAATGTCCTCAACAACATCAAAaaccgaatatttcaaaaatctatcT
GTGAGCTATTAcataatcaaaaatatttcaatggcATTGGGAATTATTTG
AGAGCAGAAATCTTATACAGATGTAAGATACCTCCGTTTACAAAATCATT
TGATGTATTTGAAAACTTGGCAATTGAAAAGGAAGAACCAAAGAGAAAAG
CAAAGgGAAATGATGgtgattttgacattttagaaTATTGTTCATTAGTT
CCGTTTGAGGTGATGGTGCTTGAAGGTGGAGGCTATGATAAATCAGAAAA
GGATTCAGAttattcacttttcgaaaactGGTTACAGTGTTATTATAACA
AGGACATGAACAACCTTGTAGACCATGATGGAAGAACAATGTGGTTTCAG
ggtGAACCAGGACCTTTAGTTCCGACAGGGGAGAAAGCCAAAGCTAGACA
TAATGCAAAGGTTATAGTGCCTACAGAAGACAATAAAAAGAAGACAAAAG
AAAAGAGCAAGAAAAACACTAAGAAAAAGGCCGAGAGTAAAAGGTCCTTG
ACAAAAGGTCATGTCCAGCCAAAGAAAAAGCTTGCACATGGACGTAAGAA
AGGTAATATTAAGAAGGAAGAAAATGCAGATCTTGTCGAAGAGTGTGATA
ACAAAGATTCCAGCAAGACCCCCACATCTTTAAAAAGTACTAAGAAAAAA
GGGCCTGGGAACCGCAAGAGATCTATTAAGCACGAAAGAGGCAAGATTGA
GGCTACAGATGTTGAAGTGAAAGatgaaaaagtaattaaaattgatgata
gTCATTTACGAAGAAGCTCTAGATTGAAGAAATGAATGCCTGAAGGACCT
GAGCATTTCAAGGCAGCTGCTTTTATCAATAAACATTGTCAAGATAGATC
TTTCACTGGGAAGATAGTAAAATCTGAAGTCAATCATCGTAATCCTGAAA
TTGATTGTCAATATGAGACTTACACAGTATCAGCAAAAGCACGTGGAAAA
GAAGTGATGGTTACGGTTACAAATCTAACATTAGATGAGAAGAAACAACA
GTCCATAAAGAAAAAAGGAATTGTGAAACTTGAaccagttgaaaataaat
cagaaCATTTCAGCATTGTTTTTCGATTTGGAATGTCTGGCTGCTTTAGG
TTTACTGATGCAGATAATCTACCCAAGCATTCACATTTACGCTTTTTCAG
TATTGATGGAATGGTTCTTTCATTTGAAGATGTTCGCAGATTTGGGAAAT
GGAAATTAACAGATACTTTTTCAGCAGACAGAGGACCTGACCCAGTTTAT
GAATACATTGACTTTCGAAAAAATGTCCTCAACAACATCAAAaaccgaat
atttcaaaaatctatcTGTGAGCTATTAcataatcaaaaatatttcaatg
gcATTGGGAATTATTTGAGAGCAGAAATCTTATACAGATGTAAGATACCT
CCGTTTACAAAATCATTTGATGTATTTGAAAACTTGGCAATTGAAAAGGA
AGAACCAAAGAGAAAAGCAAAGgGAAATGATGgtgattttgacattttag
aaTATTGTTCATTAGTTCCGTTTGAGGTGATGGTGCTTGAAGGTGGAGGC
TATGATAAATCAGAAAAGGATTCAGAttattcacttttcgaaaactGGTT
ACAGTGTTATTATAACAAGGACATGAACAACCTTGTAGACCATGATGGAA
GAACAATGTGGTTTCAGggtGAACCAGGACCTTTAGTTCCGACAGGGGAG
AAAGCCAAAGCTAGACATAATGCAAAGGTTATAGTGCCTACAGAAGACAA
TAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAACACTAAGAAAAAGGCCG
AGAGTAAAAGGTCCTTGACAAAAGGTCATGTCCAGCCAAAGAAAAAGCTT
GCACATGGACGTAAGAAAGGTAATATTAAGAAGGAAGAAAATGCAGATCT
TGTCGAAGAGTGTGATAACAAAGATTCCAGCAAGACCCCCACATCTTTAA
AAAGTACTAAGAAAAAAGGGCCTGGGAACCGCAAGAGATCTATTAAGCAC
GAAAGAGGCAAGATTGAGGCTACAGATGTTGAAGTGAAAGatgaaaaagt
aattaaaattgatgatagTCATTTACGAAGAAGCTCTAGATTGAAGAAAT
GAATGCCTGAAGGACCTGAGCATTTCAAGGCAGCTGCTTTTATCAATAAA
CATTGTCAAGATAGATCTTTCACTGGGAAGATAGTAAAATCTGAAGTCAA
TCATCGTAATCCTGAAATTGATTGTCAATATGAGACTTACACAGTATCAG
CAAAAGCACGTGGAAAAGAAGTGATGGTTACGGTTACAAATCTAACATTA
GATGAGAAGAAACAACAGTCCATAAAGAAAAAAGGAATTGTGAAACTTGA
accagttgaaaataaatcagaaCATTTCAGCATTGTTTTTCGATTTGGAA
TGTCTGGCTGCTTTAGGTTTACTGATGCAGATAATCTACCCAAGCATTCA
CATTTACGCTTTTTCAGTATTGATGGAATGGTTCTTTCATTTGAAGATGT
TCGCAGATTTGGGAAATGGAAATTAACAGATACTTTTTCAGCAGACAGAG
GACCTGACCCAGTTTATGAATACATTGACTTTCGAAAAAATGTCCTCAAC
AACATCAAAaaccgaatatttcaaaaatctatcTGTGAGCTATTAcataa
tcaaaaatatttcaatggcATTGGGAATTATTTGAGAGCAGAAATCTTAT
ACAGATGTAAGATACCTCCGTTTACAAAATCATTTGATGTATTTGAAAAC
TTGGCAATTGAAAAGGAAGAACCAAAGAGAAAAGCAAAGgGAAATGATGg
tgattttgacattttagaaTATTGTTCATTAGTTCCGTTTGAGGTGATGG
TGCTTGAAGGTGGAGGCTATGATAAATCAGAAAAGGATTCAGAttattca
cttttcgaaaactGGTTACAGTGTTATTATAACAAGGACATGAACAACCT
TGTAGACCATGATGGAAGAACAATGTGGTTTCAGggtGAACCAGGACCTT
TAGTTCCGACAGGGGAGAAAGCCAAAGCTAGACATAATGCAAAGGTTATA
GTGCCTACAGAAGACAATAAAAAGAAGACAAAAGAAAAGAGCAAGAAAAA
CACTAAGAAAAAGGCCGAGAGTAAAAGGTCCTTGACAAAAGGTCATGTCC
AGCCAAAGAAAAAGCTTGCACATGGACGTAAGAAAGGTAATATTAAGAAG
GAAGAAAATGCAGATCTTGTCGAAGAGTGTGATAACAAAGATTCCAGCAA
GACCCCCACATCTTTAAAAAGTACTAAGAAAAAAGGGCCTGGGAACCGCA
AGAGATCTATTAAGCACGAAAGAGGCAAGATTGAGGCTACAGATGTTGAA
GTGAAAGatgaaaaagtaattaaaattgatgatagTCATTTACGAAGAAG
CTCTAGATTGAAGAAATGAATGCCTGAAGGACCTGAGCATTTCAAGGCAG
CTGCTTTTATCAATAAACATTGTCAAGATAGATCTTTCACTGGGAAGATA
GTAAAATCTGAAGTCAATCATCGTAATCCTGAAATTGATTGTCAATATGA
GACTTACACAGTATCAGCAAAAGCACGTGGAAAAGAAGTGATGGTTACGG
TTACAAATCTAACATTAGATGAGAAGAAACAACAGTCCATAAAGAAAAAA
GGAATTGTGAAACTTGAaccagttgaaaataaatcagaaCATTTCAGCAT
TGTTTTTCGATTTGGAATGTCTGGCTGCTTTAGGTTTACTGATGCAGATA
ATCTACCCAAGCATTCACATTTACGCTTTTTCAGTATTGATGGAATGGTT
CTTTCATTTGAAGATGTTCGCAGATTTGGGAAATGGAAATTAACAGATAC
TTTTTCAGCAGACAGAGGACCTGACCCAGTTTATGAATACATTGACTTTC
GAAAAAATGTCCTCAACAACATCAAAaaccgaatatttcaaaaatctatc
TGTGAGCTATTAcataatcaaaaatatttcaatggcATTGGGAATTATTT
GAGAGCAGAAATCTTATACAGATGTAAGATACCTCCGTTTACAAAATCAT
TTGATGTATTTGAAAACTTGGCAATTGAAAAGGAAGAACCAAAGAGAAAA
GCAAAGgGAAATGATGgtgattttgacattttagaaTATTGTTCATTAGT
TCCGTTTGAGGTGATGGTGCTTGAAGGTGGAGGCTATGATAAATCAGAAA
AGGATTCAGAttattcacttttcgaaaactGGTTACAGTGTTATTATAAC
AAGGACATGAACAACCTTGTAGACCATGATGGAAGAACAATGTGGTTTCA
GggtGAACCAGGACCTTTAGTTCCGACAGGGGAGAAAGCCAAAGCTAGAC
ATAATGCAAAGGTTATAGTGCCTACAGAAGACAATAAAAAGAAGACAAAA
GAAAAGAGCAAGAAAAACACTAAGAAAAAGGCCGAGAGTAAAAGGTCCTT
GACAAAAGGTCATGTCCAGCCAAAGAAAAAGCTTGCACATGGACGTAAGA
AAGGTAATATTAAGAAGGAAGAAAATGCAGATCTTGTCGAAGAGTGTGAT
AACAAAGATTCCAGCAAGACCCCCACATCTTTAAAAAGTACTAAGAAAAA
AGGGCCTGGGAACCGCAAGAGATCTATTAAGCACGAAAGAGGCAAGATTG
AGGCTACAGATGTTGAAGTGAAAGatgaaaaagtaattaaaattgatgat
agTCATTTACGAAGAAGCTCTAGATTGAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036853XLOC_036853Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058495-proteinTCONS_00058495-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058495-exon-scaffold_311-1491911889:1263566..1264509TCONS_00058495-exon-scaffold_311-1491911889:1263566..1264509Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1263566..1264509TCONS_00058495-exon-scaffold_311-1510915933:1263566..1264509Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1263566..1264509TCONS_00058495-exon-scaffold_311-1575043694:1263566..1264509Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1264936..1265133TCONS_00058495-exon-scaffold_311-1491911889:1264936..1265133Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1264936..1265133TCONS_00058495-exon-scaffold_311-1510915933:1264936..1265133Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1264936..1265133TCONS_00058495-exon-scaffold_311-1575043694:1264936..1265133Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1265305..1265389TCONS_00058495-exon-scaffold_311-1491911889:1265305..1265389Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1265305..1265389TCONS_00058495-exon-scaffold_311-1510915933:1265305..1265389Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1265305..1265389TCONS_00058495-exon-scaffold_311-1575043694:1265305..1265389Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1266168..1266234TCONS_00058495-exon-scaffold_311-1491911889:1266168..1266234Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1266168..1266234TCONS_00058495-exon-scaffold_311-1510915933:1266168..1266234Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1266168..1266234TCONS_00058495-exon-scaffold_311-1575043694:1266168..1266234Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1267477..1267604TCONS_00058495-exon-scaffold_311-1491911889:1267477..1267604Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1267477..1267604TCONS_00058495-exon-scaffold_311-1510915933:1267477..1267604Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1267477..1267604TCONS_00058495-exon-scaffold_311-1575043694:1267477..1267604Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1267938..1267965TCONS_00058495-exon-scaffold_311-1491911889:1267938..1267965Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1267938..1267965TCONS_00058495-exon-scaffold_311-1510915933:1267938..1267965Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1267938..1267965TCONS_00058495-exon-scaffold_311-1575043694:1267938..1267965Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1268417..1268454TCONS_00058495-exon-scaffold_311-1491911889:1268417..1268454Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1268417..1268454TCONS_00058495-exon-scaffold_311-1510915933:1268417..1268454Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1268417..1268454TCONS_00058495-exon-scaffold_311-1575043694:1268417..1268454Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1491911889:1268906..1269760TCONS_00058495-exon-scaffold_311-1491911889:1268906..1269760Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1510915933:1268906..1269760TCONS_00058495-exon-scaffold_311-1510915933:1268906..1269760Clytia hemisphaericaexon
TCONS_00058495-exon-scaffold_311-1575043694:1268906..1269760TCONS_00058495-exon-scaffold_311-1575043694:1268906..1269760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1263566..1269760 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.4504	25.4528	15.3225	15.0643	3.31812	2.67517	4.65954	4.72239	5.16953	3.22768	5.60884	5.6468	4.30108	3.95	6.40047	6.51411	5.44142	6.70297	3.28713	2.95892	6.47782	6.79757	15.9167	14.4706	4.65873	6.03757	6.5197	5.98486	8.32205	9.79487
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012319FPG_cat
IPR015371Endonuclease-VIII_DNA-bd
IPR015886DNA_glyclase/AP_lyase_DNA-bd
IPR010979Ribosomal_S13-like_H2TH
Vocabulary: Molecular Function
TermDefinition
GO:0003906DNA-(apurinic or apyrimidinic site) lyase activity
GO:0003684damaged DNA binding
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0006284base-excision repair
GO:0006289nucleotide-excision repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006284 base-excision repair
biological_process GO:0006289 nucleotide-excision repair
molecular_function GO:0003684 damaged DNA binding
molecular_function GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity
molecular_function GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00058495 vs. Swiss-Prot (Human)
Match: NEIL1 (Endonuclease 8-like 1 OS=Homo sapiens GN=NEIL1 PE=1 SV=3)

HSP 1 Score: 261.922 bits (668), Expect = 6.880e-79
Identity = 131/309 (42.39%), Postives = 183/309 (59.22%), Query Frame = 1 
Query:  541 MPEGPEHFKAAAFINKHCQDRSFTGKIVKSEVNHRNPEIDCQYETYTVSAKARGKEVMVTVTNLTLDEKKQQSIKKKGIVKLEPVENKSEHFSIVFRFGMSGCFRFTDADNLPKHSHLRFFSIDG---MVLSFEDVRRFGKWKLTDTFSADRGPDPVYEYIDFRKNVLNNIKNRIFQKSICELLHNQKYFNGIGNYLRAEILYRCKIPPFTKSFDVFENLAIEKEEPK----RKAKGNDGDFDILEYCSLVPFEVMVLEGGGYDKSEKDSDYSLFENWLQCYYNKDMNNLVDHDGRTMWFQGEPGPLVP 1446
            MPEGPE   A+ F+N+ C+   F G + KS V+ RNPE+  +   Y +SA ARGKE+ + ++ L   + +Q                  E  ++VFRFGMSG F+    + LP+H+HLRF++      + L F D+RRFG+W L   +   RGP  + EY  FR+NVL N+ ++ F + ICE L +Q++FNGIGNYLRAEILYR KIPPF K+  V E L   +  P+    +K +    + D+LE C  VP EV+ L G GY     + D++ F  WL+CY    M++L D  GRT+WFQG+PGPL P
Sbjct:    1 MPEGPELHLASQFVNEACRALVFGGCVEKSSVS-RNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQ------------------EPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRENVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAP 290
The following BLAST results are available for this feature:
BLAST of TCONS_00058495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEIL16.880e-7942.39Endonuclease 8-like 1 OS=Homo sapiens GN=NEIL1 PE=... [more]
back to top