TCONS_00058483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058483
Unique NameTCONS_00058483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058483 ID=TCONS_00058483|Name=TCONS_00058483|organism=Clytia hemisphaerica|type=transcript|length=2070bp
catgttttGTTCAATTTGTCTTCTATTTTACATCTCTGGTTTTTTGTCTT
CTGTATAACATATGTACAAAGGAAAAAATTATTCGCATTAGATAAACCTT
GTAATATTAAttaataattatattttatataactttaaacttgacatttt
ttttaatcttttgtacattttggaaaaaataaaattatccaACAAACTAA
tctacagaaaaaaagaaattttggcatcAACTTCTTAAAAGCAAGACAAA
ATGCGAAATAAAGTCGGAAAATAGCATTGGGATCCAACTTGATGCAGAAA
GTCGTAACATCTAACGTTCATGAAGCGTAAAAACTGCACCCTGTGCATCG
GGAATAAAGTCTTGAcaacaaatattatttttaaaacttagAAGTTGGAC
TTAAGGGGGTGTAATTTAATCGATTTAATCCACAATTTTATCCCCTTAAG
ATTAATCGCTTTTTAAGACAGCCCCGACATAACATTGCAAAATATGCATT
TGTTTTGAATATCAATATGCAATAATATTAATTAAGGCAGGTTTTTAGCA
ACAGAATTTCGAATTTGTCAAATCATTTTGtcaaataatagaaaaattag
GATTAGGCAAAATGCCTGTGCTGAACTTATTCAATCGTAACCAGTCATGT
TTTACGTGTTTTTCTCAGGGGATAGTCCTTTCCCTGTAAACAGCTAGCTT
GGTATCTGAATCGTTTTGGAAGCAGCTTTTTAGGATGTGTCGGTTATCCA
TTAGTGTTCTCGACGCCCATCAGTAGTAAAGGTTTTACATCGTAGACATT
GCGTTTGTTAATATCCTCACGATATCTTTGTATCGTACTACTAACTAGGT
AAGCTGCGATACACCACACCAGTGACAGTAGCATTTGGCATCATTTTACC
ACCATAAAATAACTCTTTTTTACTTATAGAGAAATCAAACCACAACGCCG
CCATCCTTTCATCTCCGACCGTTACAATCGATTTGTTGGCAATCACAACT
TTCTAGCTTCGTTTCAAGTTCAACAACCATTATAACACTATTACCACCTT
GAACACAAGCTACAGTCTCGTTTTTGAGTGACCAAGTCGGTTGACATCTT
CTACAGACTTGGATAGCACCATCCATGGttggaaaataaaatgaattacA
AAGTCCACTGCATCCTTTGGTAGGGACATCCACGCGTGCGCAGTTGGTAC
CAGGAATTGATCGAGTTACTGTTGTGGTTACTTCCCAGCAACGTTCTCCA
GCGCTGGAGTCACCGGTAGGTACTGGTATACAGACAATGACTGTACAAAA
CAAAGCCAAAATGGTGATAGTTGTGTTCAATAGCGTTTGCATCTTCATGA
TTTTTTACTATTGTTGTTATCGTTGTTGCGTCTAtcgttgaatgttttca
aatgtaTATTGTCAGCCTGAAATGAAAGATAAAATCAATATATAGGGACG
ATAATCATATAGCTGCAGATGAGTTTTATAATTTGATAATATGCTAGACA
ATACAATAGCTTTTACAGAGATATCAGAATTTTCACGTAAAGAGCATATT
ACATTGGATCTATGACTACACAGACTTTACCGCCCTGTACAAATGGTAAA
ACGATCACAGCGCTATACTGTATATCTCAGCTCAATTAATTAGCCTAATT
GATATAGATTACTTTTAATGGCACATTAAACCGGACAATCCTAAAGTGGT
TCTCTATAAGCCGATGTAAAGACTGACTGCCTCTAAAAATTGATCTACTT
TGACTCTGACGGTGGGCCAAGTCATCAAAACCAACTATTAAATTCTTGAC
CTTTTGTTCCTTTTTACGACCTCTCTAATTAGCTATCtaaaagaacaata
aaaaacTAATTATTGTCTGGAAAATAACAGagaaaatgactgaaataaAC
AACTTAGTGTCAAACTAATTGCTACACCTCACAAAAAGATGCATTTATAC
GACGCGCACTAACCTTTCTCTTTTGAAGAAATAACTTTTACAAGAGAAGA
TCAAAcaagaaatatcaaatttgtaaTAAACTTCTGTAACAATTGATCAA
AGCAAAAAAAGCGACATTAT
Run BLAST on NCBI

protein sequence of TCONS_00058483-protein

>TCONS_00058483-protein ID=TCONS_00058483-protein|Name=TCONS_00058483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
MKMQTLLNTTITILALFCTVIVCIPVPTGDSSAGERCWEVTTTVTRSIPG
TNCARVDVPTKGCSGLCNSFYFPTMDGAIQVCRRCQPTWSLKNETVACVQ
GGNSVIMVVELETKLESCDCQQIDCNGRR
Run BLAST on NCBI

transcript from alignment at scaffold_311:1065404..1067473+

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058483 ID=TCONS_00058483|Name=TCONS_00058483|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at scaffold_311:1065404..1067473+ (Clytia hemisphaerica)
catgttttGTTCAATTTGTCTTCTATTTTACATCTCTGGTTTTTTGTCTT
CTGTATAACATATGTACAAAGGAAAAAATTATTCGCATTAGATAAACCTT
GTAATATTAAttaataattatattttatataactttaaacttgacatttt
ttttaatcttttgtacattttggaaaaaataaaattatccaACAAACTAA
tctacagaaaaaaagaaattttggcatcAACTTCTTAAAAGCAAGACAAA
ATGCGAAATAAAGTCGGAAAATAGCATTGGGATCCAACTTGATGCAGAAA
GTCGTAACATCTAACGTTCATGAAGCGTAAAAACTGCACCCTGTGCATCG
GGAATAAAGTCTTGAcaacaaatattatttttaaaacttagAAGTTGGAC
TTAAGGGGGTGTAATTTAATCGATTTAATCCACAATTTTATCCCCTTAAG
ATTAATCGCTTTTTAAGACAGCCCCGACATAACATTGCAAAATATGCATT
TGTTTTGAATATCAATATGCAATAATATTAATTAAGGCAGGTTTTTAGCA
ACAGAATTTCGAATTTGTCAAATCATTTTGtcaaataatagaaaaattag
GATTAGGCAAAATGCCTGTGCTGAACTTATTCAATCGTAACCAGTCATGT
TTTACGTGTTTTTCTCAGGGGATAGTCCTTTCCCTGTAAACAGCTAGCTT
GGTATCTGAATCGTTTTGGAAGCAGCTTTTTAGGATGTGTCGGTTATCCA
TTAGTGTTCTCGACGCCCATCAGTAGTAAAGGTTTTACATCGTAGACATT
GCGTTTGTTAATATCCTCACGATATCTTTGTATCGTACTACTAACTAGGT
AAGCTGCGATACACCACACCAGTGACAGTAGCATTTGGCATCATTTTACC
ACCATAAAATAACTCTTTTTTACTTATAGAGAAATCAAACCACAACGCCG
CCATCCTTTCATCTCCGACCGTTACAATCGATTTGTTGGCAATCACAACT
TTCTAGCTTCGTTTCAAGTTCAACAACCATTATAACACTATTACCACCTT
GAACACAAGCTACAGTCTCGTTTTTGAGTGACCAAGTCGGTTGACATCTT
CTACAGACTTGGATAGCACCATCCATGGttggaaaataaaatgaattacA
AAGTCCACTGCATCCTTTGGTAGGGACATCCACGCGTGCGCAGTTGGTAC
CAGGAATTGATCGAGTTACTGTTGTGGTTACTTCCCAGCAACGTTCTCCA
GCGCTGGAGTCACCGGTAGGTACTGGTATACAGACAATGACTGTACAAAA
CAAAGCCAAAATGGTGATAGTTGTGTTCAATAGCGTTTGCATCTTCATGA
TTTTTTACTATTGTTGTTATCGTTGTTGCGTCTAtcgttgaatgttttca
aatgtaTATTGTCAGCCTGAAATGAAAGATAAAATCAATATATAGGGACG
ATAATCATATAGCTGCAGATGAGTTTTATAATTTGATAATATGCTAGACA
ATACAATAGCTTTTACAGAGATATCAGAATTTTCACGTAAAGAGCATATT
ACATTGGATCTATGACTACACAGACTTTACCGCCCTGTACAAATGGTAAA
ACGATCACAGCGCTATACTGTATATCTCAGCTCAATTAATTAGCCTAATT
GATATAGATTACTTTTAATGGCACATTAAACCGGACAATCCTAAAGTGGT
TCTCTATAAGCCGATGTAAAGACTGACTGCCTCTAAAAATTGATCTACTT
TGACTCTGACGGTGGGCCAAGTCATCAAAACCAACTATTAAATTCTTGAC
CTTTTGTTCCTTTTTACGACCTCTCTAATTAGCTATCtaaaagaacaata
aaaaacTAATTATTGTCTGGAAAATAACAGagaaaatgactgaaataaAC
AACTTAGTGTCAAACTAATTGCTACACCTCACAAAAAGATGCATTTATAC
GACGCGCACTAACCTTTCTCTTTTGAAGAAATAACTTTTACAAGAGAAGA
TCAAAcaagaaatatcaaatttgtaaTAAACTTCTGTAACAATTGATCAA
AGCAAAAAAAGCGACATTAT

Coding sequence (CDS) from alignment at scaffold_311:1065404..1067473+

>TCONS_00058483 ID=TCONS_00058483|Name=TCONS_00058483|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_311:1065404..1067473+ (Clytia hemisphaerica)
TCATCTCCGACCGTTACAATCGATTTGTTGGCAATCACAACTTTCTAGCT
TCGTTTCAAGTTCAACAACCATTATAACACTATTACCACCTTGAACACAA
GCTACAGTCTCGTTTTTGAGTGACCAAGTCGGTTGACATCTTCTACAGAC
TTGGATAGCACCATCCATGGttggaaaataaaatgaattacAAAGTCCAC
TGCATCCTTTGGTAGGGACATCCACGCGTGCGCAGTTGGTACCAGGAATT
GATCGAGTTACTGTTGTGGTTACTTCCCAGCAACGTTCTCCAGCGCTGGA
GTCACCGGTAGGTACTGGTATACAGACAATGACTGTACAAAACAAAGCCA
AAATGGTGATAGTTGTGTTCAATAGCGTTTGCATCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036847XLOC_036847Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058483-proteinTCONS_00058483-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058483-exon-scaffold_311-1491911889:1065404..1067473TCONS_00058483-exon-scaffold_311-1491911889:1065404..1067473Clytia hemisphaericaexon
TCONS_00058483-exon-scaffold_311-1510915933:1065404..1067473TCONS_00058483-exon-scaffold_311-1510915933:1065404..1067473Clytia hemisphaericaexon
TCONS_00058483-exon-scaffold_311-1575043694:1065404..1067473TCONS_00058483-exon-scaffold_311-1575043694:1065404..1067473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1065404..1067473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252566	0.0568134	0.0834058	0	0.823675	0.752567	0.321913	0.793045	1.00506	1.46091	0	1.0095	0.570952	0.323621	0.0322247	0	0.0607404	0.0605202	4.21797	3.95309	0.207169	0.675832	0.0708506	0	0.0811576	0.0940644	0.101496	0	0.0630261	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004133DAN
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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