TCONS_00058481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058481
Unique NameTCONS_00058481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1196

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058481 ID=TCONS_00058481|Name=TCONS_00058481|organism=Clytia hemisphaerica|type=transcript|length=1196bp
ttttttttctttatagtatataaaaggatataaaaaTTCCTGATCCCTAC
TTTGTCTTAAAGGAGTGTTGTAATCTATTTTTTTCGAGAAGTGATAAAAA
TCTCTTAGTTTCTTGGATTTAAAATCGCGAAAATCTGACAAGTTAAAACc
gtatattatatttgatttttatagttatttgatcatttttttgtCGACCG
AGTGACGATGGCATCTGCGAATGGAAACAATCAATATAAGGCATACTCCA
TATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTCAATTACTTC
ACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCGTACTGCTCT
GCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACGATATCTTTG
ATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCATGGCTTCTTA
GACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACATATCAAAGA
TAACAAAGATAGAAAGAAGAGCCAAGCTCAGACATTCACCGAACTGACAG
AAGACCAGACCAATGATATACGTGAAGCATTTAGTATGTTTGACCAGGAT
GGTGATGGAACAATTTCAATGGAAGAATTACGTGAAGTAATGACCAACCT
TGGTCAAACTGTCAGTGATGGTGACATCAAAGAAATGTTAGAAGACGTAG
ATACAGACGCCGAAggaaatttggattttgaatcCTTCAAAAAGATTATG
TCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGAGAGAGGCGTT
CGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAGAAGAATTAT
GGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAAGAAGTGCAG
GATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAATCGAGTTCGC
TGAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAATAAGGATAGA
AAATCATTACGGTGGATACTCGATCAATCACGCATAAAAGTTGCATGAGA
TGTATGCGAGTATCATGGGCACCTTGCTGGAATTAAcaaagatttatttt
gaaacttgtTTTGTAAATTATTGTATATAAGATGAAATAAATATTTGCAA
AAATCGTAATTTTTGCTTAAATTATACTTAACGTGGACTTCTAGTT
Run BLAST on NCBI

transcript from alignment at scaffold_311:1021708..1028302+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058481 ID=TCONS_00058481|Name=TCONS_00058481|organism=Clytia hemisphaerica|type=transcript|length=6595bp|location=Sequence derived from alignment at scaffold_311:1021708..1028302+ (Clytia hemisphaerica)
ttttttttctttatagtatataaaaggatataaaaaTTCCTGATCCCTAC
TTTGTCTTAAAGGAGTGTTGTAATCTATTTTTTTCGAGAAGTGATAAAAA
TCTCTTAGTTTCTTGGATTTAAAATCGCGAAAATCTGACAAGTTAAAACc
gtatattatatttgatttttatagttatttgatcatttttttgtCGACCG
AGTGACGATGGCATCTGCGAATGGAAACAATCAATATAAGGTACCCTATG
TTATTATTTCCTATTTCCCATCTTTTATCCTACTTACTTTTTCCCAACct
atttgaatgttttgttgaCACATGAAAAccctttttaaaattgattttga
ttttgatggtCTGTTTGAAAAGTCATTTTTGCAGCTCTTATGACCTAGAT
TACAAGACGTGGATttataaatattcaaaaatcatATGTACAGTGTTGTC
aaacctcgttccctgtgtattatcagctttttgatgttaCTGATAGCGAC
AGATAATACCCTTGCTATTCTCCGGCGTCCAtcaagtaacgtaaataaag
cctgggatacacggggacgaggttgcagTGTTGAAAATAAGTTCAGATCA
AGTTTGTCTAGACTCATTTTGACGTCGTGCTGACCGGATTTTGCGCTTAT
ATCCTGGTATATTtaggctgttccattaaattgtCATACAGGGGAGGGGG
TGcacgaaccttttcaaggcaaaaaaagattcttacaaaaaaccctttga
aaattattttcatatcttagaagtgagggtggacgaacaaatcagtcttt
tacaccttggaaatttttagaataaccTTTTAAGTATGAAAAAATACTCC
tttataccccctggaaatttttttctgataatcccctggaaatttttgtc
CAACCCCCCTGTATGGGATATGAAATGGAATGACCCATTCGAGTGAGaga
cttttgactttttttgctCAGATTTTCATGGTCAATTTTGAAGTCTATTA
TCCTTACAGTTTTTCCTGTaatatcagtcaaaaaaaatcttcaaatatgt
tttcttttcatcaatGAGCACATTCACTGTGAAAGTCTAAATTTCTAAGA
GTCAGATTCGGCGGTTCGGCACCTGCACAACTGTAATCGATCAACAACAT
TGTAAAGataagatatattttttttataagaactagcaGACTTTTGATGA
GGCTTCTGTTCTTATTTACAAGGTTAAATAGggtgaggtattttaggctt
tttcactactttgacccctaaattgcttgaaattgagtataATTCCATGC
CCgacattgttcttaaattgctcttataaaaaaacgatgAAATAATTTAG
AAACTTCCAATGCAATATAACGTCTCCAGGTCACAgttgaatttcaagat
tttcttcTCTAGTCTTCATTTTAAACCGCTTATTCAAACTATCTCTTTCA
AATCCCTTTTCTACTTGAAAAGGATAAGATGCTTTTCACTACTAAGAGGC
TCATATAATTATATCAtgaaaaatcttctttgaagTATGAATGTCACAAG
AAGATAAATATGAGTAGAAAATTCTAAGACATGATTGAAAACCATCTTAA
AATATTCCTAAAGGTCCGAATCGAACCTAAATTTTTACACGAAATACATA
CGTCAACCAAAAATATGGCATTTTTTGCCTGCATTCTTGAAGAACAATTG
GCAATTTGGAGATTTGGATGTAAAAATATATACTCTTAAAATGGCAGTTG
CCAAATTCTATTAAGGTGATATTGTTAGCATTTCTAATAGagtacattct
tataaaaataagcaCGTATGAAACTTTATATGACATATTTTATATTGCAG
GTTCCTTCTCAGTCCAACTTTTTGAATTACAAGCAGCAATTAAAAAATAA
CATCTAGTTGATCGTCAAGGCACCCAGTGAAAAGATTTTCCTTCATTAGC
TTTAAATTTAACGTGATTTTAATTAGCAATAACTATAGTGACAAATAGGT
CCTCGACAAATCCCTCCCTTCAGACAGAAAACATTGCTTAATGCAAAATC
ACGCGCATCAGACATCATATCCTAGATAATccatttaaagttttttataa
gcataaaatACACATCAAATATGCTTACAGAGTCACCCTGGACGATTGta
aacactttttataagaaaagttaAACAAGAACACGAGTTTCAATTTTGAC
CGaaacttaagaacaaattaagaataatccCTTTCTCAGATTTAAAAATG
GCTAAAAGATTAAGTCAAGGTgagcaaaatattaaaaatagtTTGAGAAC
AATAAGTCTAGAGGTCACGAATTTCATTAGATCAACCTAGCTTTGGagtc
aaaatttacaaagattcttataaaagaaatgcTTGCAAATTTAATACCTC
TAGCGTAATCAATTAATCGAAGACATCCAATATTAAGTATTTCTTTTGTG
AAAGGTTGACTTAATCATTTTAAATTAGCTTAAAGATATCCCTGAGGGCT
ATTGAGATCAAAAGAACAGCAAAGtggattttcattgatttcGAAATGAG
TTTCTCTCTCTCCGAGTAAGCATAGTACAGAAGCACAGATTTATAATAAT
TTGAGGATAAATAGCAAGGTCGATGTTTCAGCTTTAAGAGAAATATGTTG
TCGACGATATATCTTGATGTATTAAGATCTAGATAAAATCGAAAAGCATA
TTACATATTTGAGATACCTATAACCGTACGTGTAACATATGTTACGTACG
AATTATATAGTACACTTTCGTCTCAACACTTAATGTGTTTTTGGGTAATA
CAGTATTGGAATTGAATAGAGAATATTAGAAACTTAATAAAGACATTTTA
AATGGTTTTGAAAAAGGCCGCATTGATGACGATGAAGCACAAATTGGAGG
TTTGTATATTTTACAGACACGCTTTGTGTACGTTGtacatctaacgttat
atggacgttgtgaacgttagataagcGTTGAAACAATACTTTGTgtaccg
taggattgctaaactttGTCATTCCCGGGGAAACATCCCTGACACACTTA
GAAGTTCTCTCCGCTGTTTTTCACGGGCACACCGGGAAAATATTGAACTT
TGCTGCGGTGTGCTATTGGTGTGGACAACATAAAGACAAAGACATAACGC
CGTAAGAAAATACCTCGTAGCATGCTAAAGCCAAAGTGTTGGTCTTTTTT
CGTTGTAAAGTGGCAATAGGAAAGTTCAGctgggaatgagaaagtttagc
TATCCTACAGTAAATTTTACAGAACCAAAGTGTGTATATTTTACAGAACC
GAAGTGTTTAATTTACAGAACTGGGAGATTCGGATACAACGTAGTGAGTC
ATTGACTTGGAGAAGCCTttattaaaattgtattttctgtAATATTTTCG
TTGTTACGGTATTAATTACAGCGTAGTTCTAATAAGTCTACAAAAAGACC
ATCGTAAGCCGTTAAAAGTGGCCTTCCCCGGGGGTTGTGGGGTGATCGTT
AAAGCACATGACATCCCCTGATCACCTGATCAGAACACATTGTTGAGCTC
ATTACCTCTCTAGTCTCAgtcattcaaatattttctttgtttcacaGGCA
TACTCCATATTCAATCAAGAAGATATCGAAGATTTCCGTGCAGTCTTCAA
TTACTTCACAAATGGAAAACGTGAAATCATTACCGCTAAACAAGTTCGTA
CTGCTCTGCGCTCGCTTCAACCGAAACCCAAAGACGAAGAAATAAACGAT
ATCTTTGATAAAATTACTGAGAAAAAAGGCGGAGAAGTGGATTTTCATGG
CTTCTTAGACGCTCTTCATACAGCTATCGACAAAGTGCGAAAACAACATA
TCAAAGATAACAAAGATAGAAAGAAGAGCCAAGCTCAGGTATTCTTATCA
TTCTGTTTTTCTCAGTTAACACATTCACTGagcccttttttagaaattga
aAGTCTGACCTCCtaaattttcgtcaaaattttgaccaatcgACGCAGAG
CTTCcctcgaaattcaaaaatgcaAGCAAAAGTTTCTTGTATCCATGGTT
TTAGCCCTTTGATGCACTACTGGTATTTTGGCCTTTCTTCTTTAAGAAAA
TTCAATAAGTTTCCAATTCCAGTTTTTTTCTAACAAAATTattcaacaaa
gtttgaagCATATTAGCTCATTTTTGAAGTCCATTTTCTATCTGAGACAA
AAAGCTTTGCTTTGACCTCTGTACTATAGTATTGACAAAATTATCTTGAA
ATATGAGGATAGATAGGCCAAAATTGCAAGACATGAAGTCTGAGAAAATT
CTTATTGTTATATTCCTCTTTTCCTGACCACAGTCAACCAGTACCCTCCC
ATCagccaaattttttattttatatgttAAACTGCGCAATAAAAAGCTTT
TCGTCAACAGGCTAGACGacagtttgttttgatataaaCTTTACTTTTTT
CAGACATTCACCGAACTGACAGAAGACCAGACCAATGATATACGTGAAGC
ATTTAGTATGTTTGACCAGGATGGTGATGGAACAATTTCAATGGAAGAAT
TACGTGAAGTAATGACCAACCTTGGTCAAACTGTCAGTGATGGTGACATC
AAAGGttagaaaaactgtttttaccTCAAAATAAGCGAGATAGTATTAGC
TCCAACTTCAGAATTTATTGCTGTGAGACTTATCTCTTCCATTGTTTAAT
ACTATACACCCAGTATCACAGAACCGTTGAAATCCCTTCCCCACTgtaaa
aattggtcaaaacaatagaaaaacgtGTGAAAAAAATACCCAGAAAGTTT
ACGCTAGACAATATTATCTAGTGCTATCAGTATGCATAAAAAAGGGGCCT
TCTTtttaacagctgaaaatattcttgaaaattaataaacgggggggggg
gGCCCTAAAAAAGTCCGGagggggtggaaaattttcgaaaaattaacaag
caggggcctatttatttggaacctaagagtaacacTTTAAAAGATTCACG
CATGGgtattgagacaggggtgttatgtTCTTTTCGTATCAGAAATGTTA
GAAGACGTAGATACAGACGCCGAAggaaatttggattttgaatcCTTCAA
AAAGATTATGTCACAAACAATGGGTGCTACTGATATCAATAAAGAAATGA
GAGAGGTATAAGAGTACTATTAATTTTCTTGCTGCTGttatttttgcttt
atttgGGTATTTTGACGTTGTTTGcagaattgtttttttatagttgcctc
gtataactcgaacacgtagGGGAACAATATTTGTTGGAGTAAGGGAGACT
TCCAGTTATGGGGATAGAATCATAAGGCACTGTTGACTGAAGGGGCCAAA
AAACTCGTTCGAGTTAAGAGGACATTGAgctatagaggttcgagttatgg
agactcaactgtactATAATTAATCACTTCCACCGAGTTTCCCTTTAAGT
CATTAACAGCTGTAACAACTGgaccaacctcgtccccgtgcaTCTCAGGC
TTTATTTGCGTTACACTTGATGGACGTCAGAGAATAGCAAGGGTGTTATC
TGTCGCTATTATCAGTGAGGATAAAAAAGCCGCGATAATATGCAGGGAAC
GGGGTTGCcatttgaccatttttaccgTGCGCAAATCAAGCTTTACGGAC
GAAAACATCGTCTACGGGAAAGATTATCAACTTTATCAACTTTTTTCTGT
ACAGGCGTTCGCCTTCTTTGATCAAGACGGTGATGGGACGATTACTTCAG
AAGAATTATGGCAATGTATGAAGAAACTTGGTGAAGATTTAACATTAGAA
GAAGTGCAGGATATGTTGAAAGAGGCAGATGCTGATGGGAATGGTGAAAT
CGAGTTCGCTGGTAAGATGATATCTCCTAATTCTTCAGTTTCGAacaaca
cgcttttttataaatttggtccAGTTGCCCGTATTGTGTCTATTGTATGC
ATTTTTAGGtttgactttttaaaaatgttctggaAATATGCTTACTTTAT
TCACTTTTGACTTAGTCATTATAGGGGCCTAAAGTCAGCATTTTCTTAAA
TCTGAGAAGGGTGCCGTGAATATCACAGCttgaataaaatattttctctt
aaaaaacttggcctctgataTTCAGTCAGGGTAGAGATAGAGGGATTGTT
TCTAATCTATTCTAGGCTGTTTGCCAAAATTTAGCCTAATGATTTAGTTT
TAAATGCGATAAACTCAAAAAGCCCTGTTTTGCTAATTAGCGGTGAACTT
AGATTGAAGAATAGTTTTTCCCAACGAGACCATTTTTTGGTTAAGGACAT
TTGATAAGTTTCTTCAGACAGTATAGATTAAATCCCGTTTTTACATTTTA
GAGTTTGTCAAGTTGCTTACTGGACCAATGAAGACTAAATAAGGATAGAA
AATCATTACGGTGGATACTCGATCAATCACGCATAAAAGTTGCATGAGAT
GTATGCGAGTATCATGGGCACCTTGCTGGAATTAAcaaagatttattttg
aaacttgtTTTGTAAATTATTGTATATAAGATGAAATAAATATTTGCAAA
AATCGTAATTTTTGCTTAAATTATACTTAACGTGGACTTCTAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036846XLOC_036846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058481-exon-scaffold_311-1491911889:1021708..1021947TCONS_00058481-exon-scaffold_311-1491911889:1021708..1021947Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1021708..1021947TCONS_00058481-exon-scaffold_311-1510915933:1021708..1021947Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1021708..1021947TCONS_00058481-exon-scaffold_311-1575043694:1021708..1021947Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1491911889:1025305..1025595TCONS_00058481-exon-scaffold_311-1491911889:1025305..1025595Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1025305..1025595TCONS_00058481-exon-scaffold_311-1510915933:1025305..1025595Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1025305..1025595TCONS_00058481-exon-scaffold_311-1575043694:1025305..1025595Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1491911889:1026161..1026311TCONS_00058481-exon-scaffold_311-1491911889:1026161..1026311Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1026161..1026311TCONS_00058481-exon-scaffold_311-1510915933:1026161..1026311Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1026161..1026311TCONS_00058481-exon-scaffold_311-1575043694:1026161..1026311Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1491911889:1026750..1026862TCONS_00058481-exon-scaffold_311-1491911889:1026750..1026862Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1026750..1026862TCONS_00058481-exon-scaffold_311-1510915933:1026750..1026862Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1026750..1026862TCONS_00058481-exon-scaffold_311-1575043694:1026750..1026862Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1491911889:1027412..1027568TCONS_00058481-exon-scaffold_311-1491911889:1027412..1027568Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1027412..1027568TCONS_00058481-exon-scaffold_311-1510915933:1027412..1027568Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1027412..1027568TCONS_00058481-exon-scaffold_311-1575043694:1027412..1027568Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1491911889:1028059..1028302TCONS_00058481-exon-scaffold_311-1491911889:1028059..1028302Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1510915933:1028059..1028302TCONS_00058481-exon-scaffold_311-1510915933:1028059..1028302Clytia hemisphaericaexon
TCONS_00058481-exon-scaffold_311-1575043694:1028059..1028302TCONS_00058481-exon-scaffold_311-1575043694:1028059..1028302Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:1021708..1028302 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.832455	0.264556	0.346983	0.0414851	16.234	16.5848	1.47124	1.16851	32.2494	29.5598	9.44675	16.2141	15.4518	21.989	0.207103	0.318367	0	0.296719
Blast
[Close]
BLAST of TCONS_00058481 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.695e-39
Identity = 68/145 (46.90%), Postives = 105/145 (72.41%), Query Frame = 1 
Query:  541 ELTEDQTNDIREAFSMFDQDGDGTISMEELREVMTNLGQTVSDGDIKEMLEDVDTDAEGNLDFESFKKIMSQTMGATDINKEMREAFAFFDQDGDGTITSEELWQCMKKLGEDLTLEEVQDMLKEADADGNGEIEFAEFVKLLTG 975
            +LTE+Q  + +EAFS+FD+DGDGTI+ +EL  VM +LGQ  ++ ++++M+ +VD D  G +DF  F  +M++ M  TD  +E+REAF  FD+DG+G I++ EL   M  LGE LT EEV +M++EAD DG+G++ + EFV+++T 
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

HSP 2 Score: 92.0485 bits (227), Expect = 5.335e-22
Identity = 55/167 (32.93%), Postives = 89/167 (53.29%), Query Frame = 1 
Query:  253 FNQEDIEDFRAVFNYFTNGKREIITAKQVRTALRSLQPKPKDEEINDIFDKITEKKGGEVDFHGFLDALHTAIDKVRKQHIKDNKDRKKSQAQTFTELTEDQTNDIREAFSMFDQDGDGTISMEELREVMTNLGQTVSDGDIKEMLEDVDTDAEGNLDFESFKKIMS 753
              +E I +F+  F+ F       IT K++ T +RSL   P + E+ D+ +++     G +DF  FL  +       RK  +KD                 D   +IREAF +FD+DG+G IS  ELR VMTNLG+ ++D ++ EM+ + D D +G +++E F ++M+
Sbjct:    5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMM------ARK--MKDT----------------DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMT 147

HSP 3 Score: 78.1814 bits (191), Expect = 4.837e-17
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 1 
Query:  784 EMREAFAFFDQDGDGTITSEELWQCMKKLGEDLTLEEVQDMLKEADADGNGEIEFAEFVKLLTGPMK 984
            E +EAF+ FD+DGDGTIT++EL   M+ LG++ T  E+QDM+ E DADGNG I+F EF+ ++   MK
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK 78
The following BLAST results are available for this feature:
BLAST of TCONS_00058481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.695e-3946.90Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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