TCONS_00058478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058478
Unique NameTCONS_00058478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058478 ID=TCONS_00058478|Name=TCONS_00058478|organism=Clytia hemisphaerica|type=transcript|length=3149bp
CCGAGCTATTCCAAGAATGTTCGCATTACTCGTGCCCAGTCTTACTTATC
ATAACATTGGTAAGATGGCAGCATCGAAAAGCACAAAAGGGTGAACAAAA
CTGAAAGATTTCTACTAcaattttcacattttgtatACCCTTGCCGCTGC
TGTGAATGAAAATGCATTGCTATGGATTCGAATGGGGCCTTCGTGAAGAC
TGCTGTGTATGAATCAATCAAATCCATCGCTCTGAAATCTGATACAAATG
TTCTGTCGTAACAAGTTTTGCTTTGAAATACGAAcgtaaaaacttaaaaa
gtcaCTTCGAAATGGCAGCTAGTGACATTTATAGAGATATTTTGAAAGAC
AAAGACAGGATGAATCCTAGGACAAGATCTTTTGGTGCTTTGAACAGTGG
GGACAATGATTATAAGAATTATCTTGCTGGAATGAGACCAAGAACCAAAA
GTAATAACACAACTGCGGATAATAAACAACCTTCCAACAACAAACCAAGC
TTTGTTGATAGTGCTGCTCGAAGGACACAGAATACAGCCCAGAATACCTC
AATGGCTAGTAATAAAAATGATTCAAGAGCAAATTTTGTTCAAAGAGGAA
GAAATAAATCTGACAGCAGTTTGGATAAAGAAGACACTGAGAAAAAGAAA
CAATATACAGAATTGTCATCAGTTCCCTCTAGAAGAAGTGTTGATAGTAC
ATTAAAAAAAGCTGAAGACAATCATGCTAAATCTAAGACACCAGAATCAa
cgaaagaagaaaaggaagaagaaaagaagGATGATGTAATCTCGCCTAGA
GATCAAGAAATTGAACTTCAGAAACAATTGGAGATTGATCGTATGAAAAG
AACACAAGAAGAAATTGCTATTGAACAACGTTTTAACATAAAACGAAGGA
CTCTGAAGGAAAGATTAAGTGACTTAGCTGGGGGGAATGAAAATGTTTCT
TCCTATGCCCCTGTTGATTCTATCTCAGAAGATTCTAAGCCTATGAAAGT
TGCACCTCCAGTTGCAGCTAAGCCATCCCAACATCCATCTGACAAAAAAT
CTAAAGCTGAAACAGAACCATTGAGCATTTCTGAAAATAACATTATAAAA
GAACCTTCACATCATACACCAGAAACACCTAATTTACAATTACCAGAAAA
AGAAGCTTCTCTAGATTCTTCTAAAATTGAATCAAATATTCAAGAAGAAA
ACCCTATTAACAGTGCAACTGAAATTCAAACAGACTTTTACACTAATGAT
GAGCCAATTCATGATAGTGATGAAGTAACTTCTTCAGAGGGTAAAACTTT
ACCTAATATTTCTCTTAATATTCAATCTTCATCGCAtgaaaaatctacaa
tacaAGAGCTATCCCAGGAAGTTGAAAGCATTGTAGAGGAGAAGGATCAA
GTCACTAAAGATAAAGATGTTCCAATTCCTAAAAAAGACTCTNAGCAGTT
TGGATAAAGAAGACACTGAGAAAAAGAAACAATATACAGAATTGTCATCA
GTTCCCTCTAGAAGAAGTGTTGATAGTACATTAAAAAAAGCTGAAGACAA
TCATGCTAAATCTAAGAGTAATGATATTGATTTTGATAATTTAAAGCATG
CACAGAGTGACTTTACAGGCTCTGTTGGGCGCTTACGATCTATGTTTGAT
AAAGGTTCTGATGTTGAGAATAAAACAGTTGTTCAATTGAGAGGTAACAA
AGTNCCAAACTTTTTGATACTCAATCACCAAGCCAAGTTATGCCTCAAAC
TGAGCCAATCAAAGCTAAGGGAAATAGCAaggacaaaaatgaaaatggta
GCACTAGTTCCTCAGATTTGATGAGTAGCATTCTAAGTCACATGGAGCGA
TCAAACCGTGAAAATCTATTCTCTGCATCTTCAGAGGCTGAACCAGTCAA
TCAAAAACCACCTACTCAtgatatcaaatctccaactcatgatatcaaat
ctccaactcatgatatcaaatctccaactcatgatatcaaatctccaact
ccTGAAGCCCCTCCACGTTTGAGCAAACTTCAAGGACGTTCATCACCAGC
CACATCTACAACTCAATCAAGTGTATCTTCAAATCCACCAAAATCTCCCC
CACCACCAGTGCCATCCTCAGCATCTTCAGTGTTTAGTGAAGATCCATTT
ACAAACAAAGACCAATATAAAGCAGATCCTACACCACCTCCGCCACCACA
GAGGCCTTCAACTTTAACGATTTCTCAGAACCCACCAAACTCAACTTCTT
CAACCATATCTTACATGCCAGACTCTGGTGACAGTGAGACTGAAGAGTCT
GGGTATTATAGCATGAACAACCCTAACACATCTGATAATTACAATGCAAG
TTATCAGAATGTAAACGGTAACATTGACACAGAAAGTTTCAAGCTCCCAG
CACCCCCTGCTAAGTCGAACCTGAAAAAGTCAAAAGCTGATAAAAAGCGC
AAGGTTGGTTTTAGAGATGGTGACATACAAGAGGTTGTTTATACTTATGG
TCCTATTGAATATGATAGAGCCAACGCTGATATTGACCCCTTAACATCAT
CTGCAGAATGGGAGCTGGAAAAGAGAGTTGATAGCATGGATATCTTTTCA
GTTGATCTACACAAAGatgAGAAAGGATTGGGTCTCAGTATCATTGGACT
TGGTGTTGGAACACAAAAAGGTTTTGAGAAACTTGGAATATTTGTCAAGA
CACTTACAGAAGGAGGTGCATCACAAAAGGATGGAAGgaTTCAAGTCAAT
GATCAAATTTTGGAAGTCAATGGTGTTTCTTTGGTTGGTGTCACTCAATA
TTTTGCTGCTCAAACTCTCAAAGGTGCCAACGGTATTGTAAGGTTTCTAA
TGGGACGTGAAAAGAACAAGCGGACGCAATATGCTCCTGGTGCACCGATG
TTGGACAACCCTGATATGAAGAAACACATAGATGAGATGAACCAAGCCAT
GGCACAGGTCGAGGAGTACCAAACAAGAACTCTGGAAGCGGAACATACAC
TGGAAGAAGTCAAAATGGAATTGCTGAAGGCTGAAGAAAGAGCGCATGAT
GCTGAATACAATTTGAGCGAAACGAAAGAAATGCTGAAAGCAGCCACAGA
GTCACCTTTCGTTAACAGTCAgagaaagttgaaaaatgaaataaagaag
Run BLAST on NCBI

transcript from alignment at scaffold_311:993299..1006666+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058478 ID=TCONS_00058478|Name=TCONS_00058478|organism=Clytia hemisphaerica|type=transcript|length=13368bp|location=Sequence derived from alignment at scaffold_311:993299..1006666+ (Clytia hemisphaerica)
CCGAGCTATTCCAAGAATGTTCGCATTACTCGTGCCCAGTCTTACTTATC
ATAACATTGGTAAGATGGCAGCATCGAAAAGCACAAAAGGGTGAACAAAA
CTGAAAGATTTCTACTAcaattttcacattttgtatACCCTTGCCGCTGC
TGTGAATGAAAATGCATTGCTATGGATTCGAATGGGGCCTTCGTGAAGAC
TGCTGTGTATGAATCAATCAAATCCATCGCTCTGAAATCTGATACAAATG
TTCTGTCGTAACAAGTTTTGCTTTGAAATACGAAcgtaaaaacttaaaaa
gtcaCTTCGAAATGGCAGCTAGTGACATTTATAGAGATATTTTGAAAGAC
AAAGACAGGATGAATCCTAGGACAAGATCTTTTGGTGCTTTGAACAGTGG
GGACAATGATTATAAGAATTATCTTGCTGGAATGAGACCAAGAACCAAAA
GTAATAACACAACTGCGGATAATAAACAACCTTCCAACAACAAACCAAGC
TTTGTTGATAGTGCTGCTCGAAGGACACAGAATACAGCCCAGAATACCTC
AATGGCTAGTAATAAAAATGATTCAAGAGCAAATTTTGTTCAAAGAGGAA
GAAATAAATCTGACAGCAGTTTGGATAAAGAAGACACTGAGAAAAAGAAA
CAATATACAGAATTGTCATCAGTTCCCTCTAGAAGAAGTGTTGATAGTAC
ATTAAAAAAAGCTGAAGACAATCATGCTAAATCTAAGAGTAATGATATTG
ATTTTGATAATTTAAAGCATGCACAGAGTGACTTTACAGGCTCTGTTGGG
CGCTTACGATCTATGTTTGATAAAGGTTCTGATGTTGAGAATAAAACAGT
TGTTCAATTGAGAGGTAACAAAGTCAAAAAGGACAGACCCCACTCTGCAA
GCTTTGACAATATTGAGACTAAATCCAAAAGTAAGGTCTCTGGCATTTAT
AATCGACACAGTGTACATGTTTCACCCCTTCAAATTGACAGTATTATTAC
TTCAAATGGAGAAGAgagtgaaagtttgaaagaacAAGAGGTAGAAAATG
ACCAGGTTGAAAGCAAAAGCAAGGGAAGGATTGATATTGACTCTCTTCTA
GCACCAGAATCAacgaaagaagaaaaggaagaagaaaagaagGATGATGT
AATCTCGCCTAGAGATCAAGAAATTGAACTTCAGAAACAATTGGAGATTG
ATCGTATGAAAAGAACACAAGAAGAAATTGCTATTGAACAACGTTTTAAC
ATAAAACGAAGGACTCTGAAGGAAAGATTAAGTGACTTAGCTGGGGGGAA
TGAAAATGTTTCTTCCTATGCCCCTGTTGATTCTATCTCAGAAGATTCTA
AGCCTATGAAAGTTGCACCTCCAGTTGCAGCTAAGCCATCCCAACATCCA
TCTGACAAAAAATCTAAAGCTGAAACAGAACCATTGAGCATTTCTGAAAA
TAACATTATAAAAGAACCTTCACATCATACACCAGAAACACCTAATTTAC
AATTACCAGAAAAAGAAGCTTCTCTAGATTCTTCTAAAATTGAATCAAAT
ATTCAAGAAGAAAACCCTATTAACAGTGCAACTGAAATTCAAACAGACTT
TTACACTAATGATGAGCCAATTCATGATAGTGATGAAGTAACTTCTTCAG
AGGGTAAAACTTTACCTAATATTTCTCTTAATATTCAATCTTCATCGCAt
gaaaaatctacaatacaAGAGCTATCCCAGGAAGTTGAAAGCATTGTAGA
GGAGAAGGATCAAGTCACTAAAGATAAAGATGTTCCAATTCCTAAAAAAG
ACTCTNAGCAGTTTGGATAAAGAAGACACTGAGAAAAAGAAACAATATAC
AGAATTGTCATCAGTTCCCTCTAGAAGAAGTGTTGATAGTACATTAAAAA
AAGCTGAAGACAATCATGCTAAATCTAAGAGTAATGATATTGATTTTGAT
AATTTAAAGCATGCACAGAGTGACTTTACAGGCTCTGTTGGGCGCTTACG
ATCTATGTTTGATAAAGGTTCTGATGTTGAGAATAAAACAGTTGTTCAAT
TGAGAGGTAACAAAGTNCCAAACTTTTTGATACTCAATCACCAAGCCAAG
TTATGCCTCAAACTGAGCCAATCAAAGCTAAGGGAAATAGCAaggacaaa
aatgaaaatggtaGCACTAGTTCCTCAGATTTGATGAGTAGCATTCTAAG
TCACATGGAGCGATCAAACCGTGAAAATCTATTCTCTGCATCTTCAGAGG
CTGAACCAGTCAATCAAAAACCACCTACTCAtgatatcaaatctccaact
catgatatcaaatctccaactcatgatatcaaatctccaactcatgatat
caaatctccaactccTGAAGCCCCTCCACGTTTGAGCAAACTTCAAGGAC
GTTCATCACCAGCCACATCTACAACTCAATCAAGTGTATCTTCAAATCCA
CCAAAATCTCCCCCACCACCAGTGCCATCCTCAGCATCTTCAGTGTTTAG
TGAAGATCCATTTACAAACAAAGACCAATATAAAGCAGATCCTACACCAC
CTCCGCCACCACAGAGGCCTTCAACTTTAACGATTTCTCAGAACCCACCA
AACTCAACTTCTTCAACCATATCTTACATGCCAGACTCTGGTGACAGTGA
GACTGAAGAGTCTGGGTATTATAGCATGAACAACCCTAACACATCTGATA
ATTACAATGCAAGTTATCAGAATGTAAACGGTAACATTGACACAGAAAGT
TTCAAGCTCCCAGCACCCCCTGCTAAGTCGAACCTGAAAAAGTCAAAAGC
TGATAAAAAGCGCAAGGTATTCATACATTTCTCAACTATAACTAATAGGA
GACCTAGAAATAATTCCTAAGGTTAACAAGATTTTATTTGCTTGCTTGGC
TGGTAAACTTTCTTCATAAAAGATCTTTATTAATTTACAAAGCCAATAGA
GGCTTGGTCAAGATTTTGTCTAccagaaatttatattttacttGCTCTCT
ACTTTGTACAGGTTGGTTTTAGAGATGGTGACATACAAGAGGTTGTTTAT
ACTTATGGTCCTATTGAATATGATAGAGCCAACGCTGATATTGACCCCTT
AACATCATCTGCAGAATGGGAGCTGGAAAAGAGAGTTGATAGCATGGATA
TCTTTTCAGTTGATCTACACAAAGGTAAATTAAAAAACTTCTACAAatta
ctcttgggtacctaatagccaaggggttggaaaaaacctcaaaaattaat
aagtgggggtttggaataagaatgtcctgggtggaaaatttttcaaaaat
taactaGCAGGGGCACACTTATTAAGTACCCAAGAGTATATTAAATTATT
CTTtcctagtttttttttttaattttagtaaaTAATTAAGGGAGTGATGT
TTTGCTTTATGTTTTGCTTTTACCAATTAAAGAGCAGTATGTTTTGATAG
GTGTTTTAATGAAGAGGTTGGCTTCCTTTAAATGATATAGTCTGTCCAGC
CAAGTCTGTTGCTTTAATGGATCTTGATTATATGTTGTAATTTTAATTGC
CTAATTAACTGAAAGTAGCATTTAATAGTTGGTTTTATTATCTATCTATC
ATAATAATTTTCCTCCTCCTCTTTAAAagtaaacatttcaaaattcatgt
tttgTTTATACTATTTAGTGTTTCAAAAGATTATATGCACGTATGCAAAA
ATTGTTGGCTTGCAATAAGCAACACAATCCATTGTAGGCTGTAAGGGTGT
GAATCatcataagaaaataaaaaaagatttcgaaCTAAATTCTCTGGAAA
TATATACTTAGTTTTCTTTATTACTATAAGATGTTGATTCAGGTTATTAT
GTCTGacataaaaagtcaaaatacaGTTTTAATGAGGAATATGGGGATTA
AGAGATGATGTACATATTCAAAGAGAGAATGGCATTTAAATTTTAAGATG
TATAGATACCATCTCTTATCTACGGTCATTATTTTTATGCAGTAATTTGA
TCAAAAAGGGAAACTTATTAAGCTCCCACAACATTTTGTATTGAGATTTT
TTCTCTCACTTTTAAATCATAGATATATATAATCTGTTTGGATTTTAtaa
gaaagttttgaaagtcCTTTTGTGCAGTATTGTTCTTACATCTGCTTACA
TCATTTATTCTGTCTGCATTTTAAAATGTATGTTGGTTTTTTCTATAGAG
ACATATGTTACCCATAATGCAATAGCAAATTATAAGtagaaaaattttta
taatgaattttgatgtttacaGCCtgatgataaaaatatttttatttatc
atttttctcttttactttTCAAACAACAACAATTTCAACCTACAAAAGTA
TCAGATTGCAGAAAGTGTTTGCAAATAATTCCCTTCTCATGACAGTGACA
CttattttaaaattcaattcaGCCCTCTTCAGTAAATTCTTATAAACCGA
ATCTCTGGAGCATGTTTTGTCATCCTTATACTAAACTACATAGTGTACTA
CACTAATagaatttcatattttgtgTCTGCCATGCAAGATGGTAGCAAAG
CTATGTTGCTCGATTGAAGAAAATGTAAAACCTTGGGGTTCATTTTGATA
TTGAAAGAAGATTTGAATGCACAAAACAAATTgatattaaaacatttttt
tctgaattatttttatttttaataggTGTCTTGTGTCTTTTCATCTGTAA
CTAGAATGCATTACATAGTGACTATTCTGCACTTgataatttaacttttt
taattttcttagtATATacctaaaacaaaaatttcattgaaatcgAGCCC
CAAGAGTTATTCTTTGATAATAACTCTTCTGACTTGCTGATTTCTTTTCC
TTATTAGTATTTAAATGTAATTAAAGTACTGGTTTTGCAGTACTTACTAT
TGTGATTCATCTATTCGTTTAAGGATTCCTTACATATTATGTTGAAACGT
TTGATACAATGCTCttttaaagacaaaagaaattgtatttatttttcaga
tgAGAAAGGATTGGGTCTCAGTATCATTGGACTTGGTGTTGGAACACAAA
AAGGTTTTGAGAAACTTGGAATATTTGTCAAGACACTTACAGAAGGAGGT
GCATCACAAAAGGATGGAAGGTTTGTATTCATATCACACCATATTTTTGC
CACCAAACCCTTGTTTCTTAATATAGTTCTATAAAGAAGGTTGTAGTTCG
TAGGAGATATTTGCACTTGCTTTTTGTTTTCACTAATTTAATTTACAAAG
AGTCCAACAATCTGTACTGACTTTTAAGCCCGCTTTTAAGCCCCTTAATC
ATTGTGAGTACCTGTCTGCTCAAACTAttattgtctttttcttttaggaT
TCAAGTCAATGATCAAATTTTGGAAGTCAATGGTGTTTCTTTGGTTGGTG
TCACTCAATATTTTGCTGCTCAAACTCTCAAAGGTGCCAACGGTATTGTA
AGGTAAATAATCACATTTCAACTTTATTATATAAACATACTATTAAAGGG
GAAACTTAGTGGGGAAACGGTGACGAAATTTTAAGGCAATTGGCAAAGGC
CAACTTTAAGAGGGACGTGACAAAGATTTTAATAAAAGTAAGGGTAAAAG
AAATATATGGCTTGAAATCAAGTCAAGTCAGTCTAATGTTTATTACTAGT
TTTTTATATCTATAACAAGTTAACACTTAAGTTTTTAATAATAAATAAGT
TGTAATGGTTTTTTTGTAATTCAAGCatttaaaagaaaacataatATTTC
CTCAGGAAACAATAACCATGTTGGCTTTAAACACTTAAAAAGTTGTTGCA
TCCTGCCCATAATGCTAAGCAACAAAGAAGTTTTAAAATGCTAGCTAACA
CCTCGCCCCAGCTGTGCTGCAATTTATATCTTTAAACTCTATGGGACCCT
TTGTAAGCATAGATATAACTATTGTCATCAATATTTACAAAACTAGTAGT
TAAGTGATGCACACCAAACATGTTTGTCAACAAAATAATGTGTTACCTTT
TATAAATGAAATGCATATCTAAATCATGACGAActttaaaatgttatttt
tatagTGATGATgttaaatttcaatattttctttttcctttgaCTGGTTT
AATCCCAAAAGTAATGTTTCGAGCAAATAATCTCGTATTATATTAGTGTT
TGGGTTGATTTAGACGATTTATCACACTACTCTTGAATATGCAATCTGAA
TTCAAGGGTTTGATGGGttttatgtttttgaaattttctctttAGGTTTC
TAATGGGACGTGAAAAGAACAAGCGGACGCAATATGCTCCTGGTGCACCG
ATGTTGGACAACCCTGATATGAAGGTAAGAAATAGCCAACTTAATATTCT
TCATGAGCACtattgcatttttttgaaatagtttGTTGATTCGAAGCTAG
AAAATTGATGCTAAGTACTCAAAGTTATTTTGCACCATGACACACTTTtg
atagttttgaaaatttctaaaagatGAATTTGTCTAGTGATTGATGTTTT
TGGGGAGAGactgaaatgaaaatttagtaTATTATGATTGATAGTTCGGT
GCTTTAAAGACTACTGAAAGCTTCAGGAGGGTCTTCGATGATTTACCACA
AGATTTCCCTCGTTGACTTTAATCCgaagatttatgatttattcgAAAAG
TTTCTCATACACTTCATCATATTTTCTTATCTGGTTCTCACTTTCTTAGA
AAACCTATATATTGTGCTACAGCTTTCTTCATCTCTCAAACTTTCTTCAA
CGCTTATTTCCTACTCTTTCTTTCGATGAACTtgaattttgcatttttgt
tctagacacagatttctgtaaagcccgaaggacttGATGTCGtgcttttt
aagcttttcaaagcaggaaaaaagtgaatatctattgcaaaaatattatt
gttattgttttcaaaaatctgcgaaaaaaacttctgatTGGTCAGGGGTT
AAGTGAAagtctattgtaatgtcacatgACCTAGGTAAGATTTACTACAA
CGGCACACTTTTCGGCCAAAGCactctatctagcccttcgggctttacag
aaatctgtggttCAAAACACCCATTATCAAGAAGTACTGTTGAATAAAAT
GAGGCTCAGCTTTCAATAGAGTTGTAAGTTATAATTGACAGACCAAATAA
TACTCTGAGTGCATTATAAtatcaaaaatctcttttttttgtttgaaata
tatTAAAAGATGAGCGAACTTACCTCTTTTAGTTTACATTTTAATATCCN
ttttttttgtttgaaatatatTAAAAGATGAACGAACTTACCTCTTTTAG
TTTACATTTTAATATCCTTTTTGAGACAAAATACTCATTTTAGAGTAGTT
GACTTGCTTGCTTTTACCCTGCAATGAGATTGTGTGATTATAGCTTTCGA
AGAAATTTGCCAGACTTGTGGAACTTCTGAATTTCTTAAATATGTGACTT
GAAATTTGTTGGTGTTTGATATAGTTTTTATAGAGAATCTCATTGGAGTT
CTGAACTTAAACTAAACAGAACAGCTAAACAAATAACTGTAGATAAacct
tttcaaaacatttgggacgacattttttattataattgtTTAAGATGTTA
TAACATTTTAAGAGAAACTTAGTATAAAATGTAGTGTCTACATTAATTGA
CTAAAGAATGTGTCAAGAATTTTGGTTGAGTAAAAAATACTGTTCCTATT
GCTCTTGTCAAGCCGTTAAATAAACATTGGTTGTGGATTTTATTATGAAG
ACTGTTTTATTTTAAGCTGATATTTTGAGACTATTTCAAGTCAGTTTGAG
ATGCTAAAAAATCTTGATTTGATGGCATTTTAAATGGTAGTTTTGTTCAG
TATTAGGGACAttattttattaatctttttgaCACAAGATGTGGATTGTA
CTAGTTGCTAGCTATGGAAAGGCTAGATATTTTGTGGTAATTCATGTACA
TTTCTCAACAATATTCTGTATACTAACCTAAGTGTCCCAATCTATCTCAT
AAACTGGAAATAACAAAGATTTTCGAAATTGTATTTTATACACAATTGTA
TAAAATATTAAAGATACTTTCAGTATCTTGATCAATATCTTGATCCGTAT
CTTGataccatggcgttctaaaccTAGGCCTTATATTTAGAACGGTATGC
TTGATACCCTAATTCACTAATCTTGATCTAGCCATATCCAGCCATATATC
TAGGCTCAGTGTTGTTCTTGATTGTTCGTATTTTCTAGTGTTCTAAAAAC
TCTCGTTTttcttatacacgtttttttataagaatatactttattaGAAT
agtcatgatgaaattggctaaaaaattaagaatatggtaagaatataacc
atcatggaatttggcaactgagCCTCTAAGAATGCCTATTTTCAGAGTAT
TTTACTATAAAATTGCCAATCATTCCGCAGCAATGCTAAAAGGTTCCACA
AAATGCCAAATTTTCGCTTGAGGTATGTATAACATGCttgattttagctg
ggtttgaATCAAAActtaagaataccgtaagaatatttcaggatgatttt
tcccaaaaagttaagaatattcatgatgaattgaaaaaacgtgtaaaaca
aTGCGTGTATGACATTCTTGGATTGGAATCTAATTATGACGTCCAACACC
TTCCTTTTCCAAAACGTTTACTTACAAATCCCTCGTCATTATCTTCTTCA
GAAACACATAGATGAGATGAACCAAGCCATGGCACAGGTCGAGGAGTACC
AAACAAGAACTCTGGAAGCGGAACATACACTGGAAGAAGTCAAAATGGAA
TTGCTGAAGGTAAATTGATTATAATTTGagaactttttgagttttaagcc
taaaattgttcttaacatgttcctatttttgccattttttgagtattttt
gtccattttcttaagaaattgggtgttttagagtccgcgaagccttaaaa
tgttcttaactttttcttaacattttgaccttCGAAGCCTTTTaatctta
tatagtttgctcttataaaaaaacgtgtatgattatttttattgaaactt
CACTTATCATCGCCATTGTCTAACGAACTAGACAACTGTACAACCTCTAA
TGCAGAGTTGACACACTTGCCAGCAGGGTGAAATACTCCTTATGGCTTGA
TATANTATTTAGAACGGTATGCTTGATACCCTAATTCACTAATCTTGATC
TAGCCATATCCAGCCATATATCTAGGCTCAGTGTTGTTCTTGATTGTGAA
TATTTTCTAGTGTTTTAAAAACCCTCGTTTttcttatacacgttttttta
taagaatatactttattagaatattcatgatgaaattggctaaaaaatta
agaatatggtaagaatatcaccatcatggaatttggcaactgagCCTCTA
AGAATGCCTATTTTCAGAGTATTTTACTATAAAATTGCCAATCATTCCGC
AGCAATGCTAAAAGGTTCCACAAAATGCCAAATTTTCGCTTGAGGTATGT
ATAACATGCttgattttagctgggtttgaATCAAAActtaagaataccgt
aagaatatttcaggatgatttttcccaaaaagttaagaatattcatgatg
aattgaaaaaacgtgtaaaacaaTGCGTGTATGACATTCTTGGATTGGAA
TCTAATTATGACGTCCAACACCTTCCTTTTCCAAAACGTTTACTTACAAA
TCCCTCGTCATTATCTTCTTCAGAAACACATAGATGAGATGAACCAAGCC
ATGGCACAGGTCGAGGAGTACCAAACAAGAACTCTGGAAGCGGAACATAC
ACTGGAAGAAGTCAAAATGGAATTGCTGAAGGTAAATTGATTATAATTTG
agaactttttgagttttaagcctaaaattgttcttaacatgttcctattt
ttgccattttttgagtatttttgtccattttcttaagaaattgggtgttt
tagagtccgcgaagccttaaaatgttcttaactttttcttaacatTTTGA
CCTTCGAAGCCTTTTAATCTTATatagtttgctcttataaaaaaacgtgt
atgattatttttattgaaacttCACTTATCATCGCCATTGTCTAACGAAC
TAGACAACTGTACAACCTCTAATGCAGAGTTGACACACTTGCCAGCAGGG
TGAAATACTCCTTATGGCTTGATATATAGATTAATTCTTTAAGAAAGTTT
TTCCAAAGaagttaaaattaaaatcaaaagaaaatcaaaatgttcCGATT
ACCTTATCTAGCAGACACACAGTATTGTTTAGCTTTCAAAtttagcgacc
gtagtgcagtggtagagcatccggctacggtgcgcaaggttgtgggttca
acccccagctgggtcataccaaagattcataaaatggtacttgatgtctc
tctgCTTGATAATCAGCAATTAAGACAAGGATCAGGGGTAAATGGAGCAA
tctagggagaaagagtggcgccctcccctacctacGGGTgcatagctatc
gaaagaggagctgACTGCGGTCGCAGTCTTACTTAGCTTTCAAATTACGT
CATTAACGGGCATTGTTGTGTGCCCGGTTGGGAAGTATTCTATTTCGAAA
AGAGTGTAACTGAACTCAAAGGGACTATTTGTTTTGGTAAAAATGATTGC
TTACGCATGGTTAAGGTGGTTTTACACCTCAAAAGAATGTGCTGAAacaa
ttattttctttgaattggTAATATGTGTAgtgaaatattaaaaaaatttc
atatgtGTTTCTTCAATTTGTATGTCCGCAAAACAGGGTAATTTTTTCGA
ACGTGATccattcttttataagaacacaatatATAAGAACTTGactcgat
ggccaaaatattaagaacaagttaagaacattttaaagtcCATGAACTCC
AAAACACCCAATATCATAGGAAATTGCACAACCATACTAGCAAAATGCTA
ACAATacttttaagcttaaaactcagaTAAGAGCATACGATGGCTTCATA
AATttaggatattcttataaagaaaacgtgtataggTGAttttaatatga
aaatgcttatGACAGcactttttaatttatttgacaTCATGCTCTCATTT
GATCTATCTCGAAAGTAGGAAGtgaaaggaattttttttaaacctgaTAA
TTAACCTATTTTTATGTTTCCAAAGGGAAAGaataattctattgtttata
acTCTTTTAATTACAAATTTAGTACAAAATACTTGATATAGGGACAAACT
TATGTAGATAGCACTACATATCATATTTTTGACCCAATCAGAAGCTAACC
AACTCATAGTATGAGAATCATGAAGGTTAAGGTAAAACTTAAGTAAATAG
AAATTTGCTTTTATTTTCCAGATATTTGGTTTGCAGATATAAACTATCGA
ACATATATTTTTATAACTTTTCAGGCTGAAGAAAGAGCGCATGATGCTGA
ATACAATTTGAGCGAAACGAAAGAAATGCTGAAAGCAGCCACAGAGGTAT
GTTTCTTAACGTCACTTCGTCACTCTTCTTTAGAGAAAGCAATAAttgcg
agtttatgtatttgcacttttgaggacggtaaagtgactgaagcgatttg
gaatagccCGCAGTtatgacccgcaaaatcgaggacggtaaaaaaaagtg
ctgatttaccgtcgtccttagtcagtcaggatgtagacaaattagaaccC
TACCTTCTCCTTCACACTACAGAAACCTGTTAATAGGAAGGCTGAAAGCA
CTGGTTTAACCTTTCTTTGCTTTCGGCAGCTAGAGTGGAGAAAGTTTTTT
CTTCAATTAGCCATCCCGTCTGTCCTTTTTTTCTATCTCTATTCCCTAAA
AAGAAGGGTCGGCATCAGTAAAAGTGGGACAGCAGACCAAATTAGCAGAC
CAGTATTTTAGatattatctttaaataatACAGTTTAGATTTGTTAGAAA
TTGTGGtgatagatatgccctccgatgcatcggaatgggtcctacccacg
gtggagtaggaatcacagcgcaagcagacattgcaaccctgcagatgcaA
GCTGCCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAaggagcattcacttgccaagtgaatcgta
gtgccacggtgggtatcgaactcgagcctcctggacagaagtcaagcacg
ataaccactacaccactACGCCTTGTGGAAGTTTTAGTATATTAAAAGCT
AGCATGCGGAAATGATTTGTATGAAATATTCTCAGTACTAACAAGACATT
ACCTTGTAGTATTTAGTATCTTGTGGTTAGGTAGCTCAGTACAGCTCagt
agattgggtaatctgatctaggcggtaagtcaCTGGGAGCTTGGAATAGA
TGACGCGCTGTATCTCAGCATTCGACCTCCCAGGTCTAGTGCAAATAAGA
AAGGGATAGACTCCCTTACTCCCGGCTCCGAAAACACCCACCAGATGAAT
AAACTTACTATTTAGTATCTTACAGTTAGAAGATTTTGAGCGGAACTTTA
ATATGTATGTGTTAATGAATGGGGAAGATATGATTAGATAATTTTCTTAG
AAAGACTTTATTTTATACCTTTTATTACTACAGTTTTTGAGTTCTTAACC
GGCAAATTAAGACTATAACAGACCTTGTAACATTATGAACTGACACGAGT
AATTTGATATTTCATTCATCTAACATTTTTCACTCATTCAACCTTTTTCC
TTTCCATTTTCTTCCCATAGTCACCTTTCGTTAACAGTCAgagaaagttg
aaaaatgaaataaagaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036844XLOC_036844Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058478-exon-scaffold_311-1491911889:993299..994036TCONS_00058478-exon-scaffold_311-1491911889:993299..994036Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:993299..994036TCONS_00058478-exon-scaffold_311-1510915933:993299..994036Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:993299..994036TCONS_00058478-exon-scaffold_311-1575043694:993299..994036Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:994400..996114TCONS_00058478-exon-scaffold_311-1491911889:994400..996114Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:994400..996114TCONS_00058478-exon-scaffold_311-1510915933:994400..996114Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:994400..996114TCONS_00058478-exon-scaffold_311-1575043694:994400..996114Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:996310..996472TCONS_00058478-exon-scaffold_311-1491911889:996310..996472Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:996310..996472TCONS_00058478-exon-scaffold_311-1510915933:996310..996472Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:996310..996472TCONS_00058478-exon-scaffold_311-1575043694:996310..996472Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:998298..998418TCONS_00058478-exon-scaffold_311-1491911889:998298..998418Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:998298..998418TCONS_00058478-exon-scaffold_311-1510915933:998298..998418Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:998298..998418TCONS_00058478-exon-scaffold_311-1575043694:998298..998418Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:998646..998750TCONS_00058478-exon-scaffold_311-1491911889:998646..998750Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:998646..998750TCONS_00058478-exon-scaffold_311-1510915933:998646..998750Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:998646..998750TCONS_00058478-exon-scaffold_311-1575043694:998646..998750Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:999544..999622TCONS_00058478-exon-scaffold_311-1491911889:999544..999622Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:999544..999622TCONS_00058478-exon-scaffold_311-1510915933:999544..999622Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:999544..999622TCONS_00058478-exon-scaffold_311-1575043694:999544..999622Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:1002000..1002107TCONS_00058478-exon-scaffold_311-1491911889:1002000..1002107Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:1002000..1002107TCONS_00058478-exon-scaffold_311-1510915933:1002000..1002107Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:1002000..1002107TCONS_00058478-exon-scaffold_311-1575043694:1002000..1002107Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:1004723..1004794TCONS_00058478-exon-scaffold_311-1491911889:1004723..1004794Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:1004723..1004794TCONS_00058478-exon-scaffold_311-1510915933:1004723..1004794Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:1004723..1004794TCONS_00058478-exon-scaffold_311-1575043694:1004723..1004794Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1491911889:1006619..1006666TCONS_00058478-exon-scaffold_311-1491911889:1006619..1006666Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1510915933:1006619..1006666TCONS_00058478-exon-scaffold_311-1510915933:1006619..1006666Clytia hemisphaericaexon
TCONS_00058478-exon-scaffold_311-1575043694:1006619..1006666TCONS_00058478-exon-scaffold_311-1575043694:1006619..1006666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_311supercontigscaffold_311:993299..1006666 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58446e-07	0.68604	0.349473	0.590369	0	0	0.205197	0	0.00428569	0.425064	2.02745e-08	0	0	0.029415	0	0.104003	0	4.0108e-10	0	0	3.64224	6.15503	0.702108	1.56447	0	0	0.108657	0	0.0585439	0.187505
Blast
[Close]
BLAST of TCONS_00058478 vs. Swiss-Prot (Human)
Match: NEB1 (Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.453e-37
Identity = 82/127 (64.57%), Postives = 104/127 (81.89%), Query Frame = 3 
Query: 2484 VVYTYGPIEYDRANADIDPLTSSAEWELEKRVDSMDIFSVDLHKDEKXXXXXXXXXXXXTQKGFEKLGIFVKTLTEGGASQKDGRIQVNDQILEVNGVSLVGVTQYFAAQTLKGANGIVRFLMGREK 2864
            V  TY   +YDR N ++DP+ +SAE+ELEKRV+ +++F V+L KDE GLG+SIIG+GVG   G EKLGIFVKT+TEGGA+Q+DGRIQVNDQI+EV+G+SLVGVTQ FAA  L+   G VRF++GREK
Sbjct:  466 VFNTYSNEDYDRRNDEVDPVAASAEYELEKRVEKLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTKGNVRFVIGREK 592
The following BLAST results are available for this feature:
BLAST of TCONS_00058478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEB12.453e-3764.57Neurabin-1 OS=Homo sapiens GN=PPP1R9A PE=1 SV=2[more]
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