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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058469 ID=TCONS_00058469|Name=TCONS_00058469|organism=Clytia hemisphaerica|type=transcript|length=1659bp
AAGACCTTCAAGAGGGGAGTGCATATTGAAAGAAAAGATGTATAAACAAT
CATCAATAACTGGTCAACAATCAAGAAGACTAAATATTATATGCATTCTG
GCCATGTTGTTCATACCATTACAAAAACATTCGACCGTTGATGGTGCATA
CGCTGTAGCGAAAGATAAAGAACGTTGCAAATTAGTTGGATATCAACTGA
AATTAAGTTTTCCGACATGTTACGACAGTATGGTTAACTTGAATACTTGT
CTTGGAGCTTGTATATCGGCTACCGGTCCTTTTACACGTAACAAAATGAC
AGAAATGACCACGTGTTGTCGTGTAGTGAAATACCAAGAAGTTCACGTTC
GAATCAAGTGTAAATATCAACCGAATTATTTCCATACTGTTAGAAGTGCA
ACTGAATGTTCGTGTGGAAAATGTCCTGGATCGTAGAATGTTTTGGTGAT
TTGATTAGAAGAAATGACGTTGGTTTGAAGATTGGTAGAGAGGCGATATC
TTTCAAGCCTAAATCGACGCTACGCAGTTAACTATTGTAGACTATCACGT
CAAATTTTGGCAGGGTGTAATGTCCCTTGCTTGGTAGAGACATCAACTCT
TTATGCAGCTGATACGAGTTGATACATAATTTTTTGTGCTTTGACCCGTT
TTTCGCGAACCCTGTCTAAAGAGATTGTCACGAAAGGTAACTTCAGCAAA
ATTATGAATTaagagaaatttattttttattcaattgtgaaaatatgaaa
aaagaattttatggagattaatatttattattttttagagatatattttc
attgttatttaaGTTTTGTAGATCTTTCGATCTGTTACTGTCGTCTGTCG
ATAATTAttaataatattatttttgtcaatGTCCAAATTGGGCATAAGAA
gtaataatttttcaatatatgggaaatttccttttaaaagtatggaatta
aaaaaaaactggaaaCTTTCTACACTTCGATAGTGCTCGGTGATCCCCAA
ACTCAATAGTCTTTTACTTTAGACGATCAGGACGGATCGCAATTGAATAT
CTAACTAGTATAAATTACCATACCCAAAGCTTCAGGAGATTCATCATCTC
ACtcgttttgcaaaaaaatatttttctggtacTATAGACcgcttttcata
aattacgttacgaacatcacttgcctcgttttgaaattattatcaTGTTG
ATTACTCggtgattttatcaaaactactttctattcataaaaatcattta
atgtctcaaggaaCATGATCGCTATggcaattgtttgaatacgaggcaag
tgatgtcgttcgtgacgtaatttatgaaaagggcTACTTTAATCGTAGAA
ATTTTAGCGAGACTAATTTTAGCGCATATTAGCGAGTCAGGAAAATCTTG
ATTttttttggatttattttagcgaatcacgatttcaaaaaatttcgcgt
ggataaattttagtgaatactcgtattacattattgactgagttcgtttt
ctagcatttttctgcactgaaacccttcgtattgataaaaaatgtattaa
ggcaatataaacagaaatttcgcgcggataaattttagcgatctgtcgat
tcggcgtgttttagcgggatttattttagcgaaaatagggaaaactcgct
aaaacgcta Run BLAST on NCBI transcript from alignment at scaffold_311:843655..846233+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058469 ID=TCONS_00058469|Name=TCONS_00058469|organism=Clytia hemisphaerica|type=transcript|length=2579bp|location=Sequence derived from alignment at scaffold_311:843655..846233+ (Clytia hemisphaerica)
AAGACCTTCAAGAGGGGAGTGCATATTGAAAGAAAAGGTATTGATTTTTG
ACCTTCTGATCAGTTCGTAGTGAAAACTTCTTATTTCATGGACAAGACTC
TCCTGTCCTGTATCGGCAAGTCAAGACTCTCGATAGTAGGGATGGggtta
gacgatcctatcgtctacacacgatcactaaaaagggaatagtttaggag
aggcgtgataaattcgggtggagtaagcagtggcggtgATGTTTACAGTc
cgttttgttccaaaactctaccgcaacttttttcccgtaaaccgcgctga
cgccctaactctttctcgcatttactttaaacggacgatagcatcgtcta
ggaTGGGGTATACTTTTTTCTATACTTGATAAAGTTCGGATTTCGGATAG
TTGTTGTAATATTTTCCGTTTACATTAATGTCCCATACCCTTTTAAATAG
CAAAGGAGAGTAAATTCTTTTGGTTAAATGTGTTTGATAATTCCAGGGCA
TTTTTCCAACTATGGTAATTTTGGGGTTTTGTAAAGGGTATAGTTAAGTA
actgaaatttctcaaaaaaggatTCCTCCATATTTCGAGCCATATTTCAT
AACCTGGTATAAATGTTTGACTCGACAACCCTGTCTCATCTATCAGTTTG
TGATATCAGTTGTTTACACCCAAAAACCTTTGACAGTACGGTCGGGTTTT
GAGGGGACTGCTGATGAATTTTACAAGAAAATGACGacaattattttagt
ttttgagaatgtGAATGCGAACGACTTCAGACATTTTgatgtcattattt
tttgctaaactcgaacccagtcttcTCACGCTTGAAAGGTTGATAGATGT
ATAGAGTATATCCAAGTCTTGGAAATATAGATCTGATCATCAATGGTTTC
GAGAtctcaaattataaaaataactttatttttaaaaattgtttccCCTA
CTTTTAGATGTATAAACAATCATCAATAACTGGTCAACAATCAAGAAGAC
TAAATATTATATGCATTCTGGCCATGTTGTTCATACCATTACAAAAACAT
TCGACCGTTGATGGTGCATACGCTGTAGCGAAAGATAAAGAACGTTGCAA
ATTAGTTGGATATCAACTGAAATTAAGTTTTCCGACATGTTACGACAGTA
TGGTTAACTTGAATACTTGTCTTGGAGCTTGTATATCGGCTACCGGTCCT
TTTACACGTAACAAAATGACAGAAATGACCACGTGTTGTCGTGTAGTGAA
ATACCAAGAAGTTCACGTTCGAATCAAGTGTAAATATCAACCGAATTATT
TCCATACTGTTAGAAGTGCAACTGAATGTTCGTGTGGAAAATGTCCTGGA
TCGTAGAATGTTTTGGTGATTTGATTAGAAGAAATGACGTTGGTTTGAAG
ATTGGTAGAGAGGCGATATCTTTCAAGCCTAAATCGACGCTACGCAGTTA
ACTATTGTAGACTATCACGTCAAATTTTGGCAGGGTGTAATGTCCCTTGC
TTGGTAGAGACATCAACTCTTTATGCAGCTGATACGAGTTGATACATAAT
TTTTTGTGCTTTGACCCGTTTTTCGCGAACCCTGTCTAAAGAGATTGTCA
CGAAAGGTAACTTCAGCAAAATTATGAATTaagagaaatttattttttat
tcaattgtgaaaatatgaaaaaagaattttatggagattaatatttatta
ttttttagagatatattttcattgttatttaaGTTTTGTAGATCTTTCGA
TCTGTTACTGTCGTCTGTCGATAATTAttaataatattatttttgtcaat
GTCCAAATTGGGCATAAGAAgtaataatttttcaatatatgggaaatttc
cttttaaaagtatggaattaaaaaaaaactggaaaCTTTCTACACTTCGA
TAGTGCTCGGTGATCCCCAAACTCAATAGTCTTTTACTTTAGACGATCAG
GACGGATCGCAATTGAATATCTAACTAGTATAAATTACCATACCCAAAGC
TTCAGGAGATTCATCATCTCACtcgttttgcaaaaaaatatttttctggt
acTATAGACcgcttttcataaattacgttacgaacatcacttgcctcgtt
ttgaaattattatcaTGTTGATTACTCggtgattttatcaaaactacttt
ctattcataaaaatcatttaatgtctcaaggaaCATGATCGCTATggcaa
ttgtttgaatacgaggcaagtgatgtcgttcgtgacgtaatttatgaaaa
gggcTACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGCGCATATT
AGCGAGTCAGGAAAATCTTGATTttttttggatttattttagcgaatcac
gatttcaaaaaatttcgcgtggataaattttagtgaatactcgtattaca
ttattgactgagttcgttttctagcatttttctgcactgaaacccttcgt
attgataaaaaatgtattaaggcaatataaacagaaatttcgcgcggata
aattttagcgatctgtcgattcggcgtgttttagcgggatttattttagc
gaaaatagggaaaactcgctaaaacgcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058469-exon-scaffold_311-1491911889:843655..843691 | TCONS_00058469-exon-scaffold_311-1491911889:843655..843691 | Clytia hemisphaerica | exon |
| TCONS_00058469-exon-scaffold_311-1510915933:843655..843691 | TCONS_00058469-exon-scaffold_311-1510915933:843655..843691 | Clytia hemisphaerica | exon |
| TCONS_00058469-exon-scaffold_311-1575043694:843655..843691 | TCONS_00058469-exon-scaffold_311-1575043694:843655..843691 | Clytia hemisphaerica | exon |
| TCONS_00058469-exon-scaffold_311-1491911889:844612..846233 | TCONS_00058469-exon-scaffold_311-1491911889:844612..846233 | Clytia hemisphaerica | exon |
| TCONS_00058469-exon-scaffold_311-1510915933:844612..846233 | TCONS_00058469-exon-scaffold_311-1510915933:844612..846233 | Clytia hemisphaerica | exon |
| TCONS_00058469-exon-scaffold_311-1575043694:844612..846233 | TCONS_00058469-exon-scaffold_311-1575043694:844612..846233 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:843655..846233 + |
Blast
The following BLAST results are available for this feature:
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