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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058467 ID=TCONS_00058467|Name=TCONS_00058467|organism=Clytia hemisphaerica|type=transcript|length=6158bpRun BLAST on NCBI protein sequence of TCONS_00058467-protein >TCONS_00058467-protein ID=TCONS_00058467-protein|Name=TCONS_00058467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=969bp MIELNVDKKNQPAVVLLTVEKLKSLNEKVQVNQADKTFVKISSDTTIEGERun BLAST on NCBI transcript from alignment at scaffold_311:806491..846233+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058467 ID=TCONS_00058467|Name=TCONS_00058467|organism=Clytia hemisphaerica|type=transcript|length=39743bp|location=Sequence derived from alignment at scaffold_311:806491..846233+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:806491..846233+ >TCONS_00058467 ID=TCONS_00058467|Name=TCONS_00058467|organism=Clytia hemisphaerica|type=CDS|length=55290bp|location=Sequence derived from alignment at scaffold_311:806491..846233+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058467 vs. Swiss-Prot (Human)
Match: SYEP (Bifunctional glutamate/proline--tRNA ligase OS=Homo sapiens GN=EPRS PE=1 SV=5) HSP 1 Score: 828.935 bits (2140), Expect = 0.000e+0 Identity = 440/915 (48.09%), Postives = 592/915 (64.70%), Query Frame = 3
Query: 138 IELNVDKKNQPAVVLLTVEKLKSLNEKVQVNQADKTFVKISSDTTIEGENAVSRYLARQFPNAQLYGSTALEMSQIDSWLDFSTLYLKNSSEIKDAIVELNKSLKMSTYLVGQGFTLADFAIWAALKDNSKWSASDDE------VSRWFKFASENGIFXXXXXXXXXXXXXXXXXXXXXXXXPLEEGGKFIDLPGAEMGKVVTRFPPEASGYLHIGHAKAALLNQAYKEIYDGKLIMRFDDTNPAKENAHFEQIILEDIKLLKLTPDMYSRTSDHFDKIEVFAEQLIRQGDAYCDCTPSEEMRKCREERQASIYRDQTPEEAMRIFQEMKKGSPEGLANCLRGKVDYASDNGCMRDPVLYRCRNEEHISTGDKYKAYPTYDFACPIVDSVEGVTHTMRTSEYDDRDVQYFWMLEKLGLRKPMIYSYSRLNLINTVLSKRKLTYLVDEGLVDGWDDPRFPTVRGVLRRGLTIPGLIEFIKAQGASKANVVMGWDKIWAFNKKMIDPVAPRYNALLKXXXXXXXXXXXXESSTKYPRHPKNEEVGEKNVYYSSKVFMEGEDAAAIKEGDLVTFINWGNLRIKGINKEGD-KVVSVDAVTELDNKDFKKTLKVTWLAEHSSAPFVPTKCFFFDNIITKDVLGKDDNFKDFIGKDTKRENEMLGDPELKNLKKGDIIQIQRRGYFICDQPYEPPSRHSGRESPCMLFHIPDGSTAGMMNQKNDKKXXXXXXXXXXXXXXTARXXXXXXXXXXXXXXXXXANLXXXXXXXXXXXXGHTPEQQKLYDSVTAQGDKIRSLKAEKAAKDAILAEVTVLKDLKAQYKAATGREYVAAPTANTSKPVEKKMAPVASTTVSLSPEAESVVQKITEQGNKIRDMKTNKAAKEALQPEIDQLLKLKSEYKAITGSDY---QAPGAGSS 2852
+ L V+ + P LL VE +K + + V + + + +S + N++ RYLAR A LYGS +E ++ID WL+FS L + I ELN L + TYLVG +LAD +WA LK N+ W + V RWF F F++V K S++ + +K ++ GKF++LPGAEMGKV RFPPEASGYLHIGHAKAALLNQ Y+ + GKLIMRFDDTNP KE FE++ILED+ +L + PD ++ TSDHF+ I +AE+LI++G AY D TP+E+M+ RE+R S +R E+ +++++EMKKGS G + CLR K+D +S+NGCMRDP LYRC+ + H TG+KY YPTYDFACPIVDS+EGVTH +RT+EY DRD Q++W++E LG+RKP I+ YSRLNL NTVLSKRKLT+ V+EGLVDGWDDPRFPTVRGVLRRG+T+ GL +FI AQG+S++ V M WDKIWAFNKK+IDPVAPRY ALLK +V+PVNV A E + +HPKN EVG K V+YS KVF+EG DA EG++VTFINWGNL I I+K D K++S+DA L+NKD+KKT KVTWLAE + A +P C ++++ITK VLGKD++FK ++ K++K E MLGDP LK+LKKGDIIQ+QRRG+FICDQPYEP S +S +E+PC+L +IPDG T M + +K +++ R T+ + + LY+ V QGD +R LKA+KA K+ + A V L LKA+YK TG+EY P + ++S + + E++S+ ++ QG +R +K K+ K + ++ LL LK++YK TG +Y Q P + SS
Sbjct: 4 LSLTVNSGDPPLGALLAVEHVKD-DVSISVEEGKENILHVSENVIFTDVNSILRYLARVATTAGLYGSNLMEHTEIDHWLEFSATKLSSCDSFTSTINELNHCLSLRTYLVGNSLSLADLCVWATLKGNAAWQEQLKQKKAPVHVKRWFGFLEAQQAFQSVGTKWDVSTTKARVAPEKK-----QDVGKFVELPGAEMGKVTVRFPPEASGYLHIGHAKAALLNQHYQVNFKGKLIMRFDDTNPEKEKEDFEKVILEDVAMLHIKPDQFTYTSDHFETIMKYAEKLIQEGKAYVDDTPAEQMKAEREQRIDSKHRKNPIEKNLQMWEEMKKGSQFGQSCCLRAKIDMSSNNGCMRDPTLYRCKIQPHPRTGNKYNVYPTYDFACPIVDSIEGVTHALRTTEYHDRDEQFYWIIEALGIRKPYIWEYSRLNLNNTVLSKRKLTWFVNEGLVDGWDDPRFPTVRGVLRRGMTVEGLKQFIAAQGSSRSVVNMEWDKIWAFNKKVIDPVAPRYVALLKKEVIPVNVPEAQEEMKEVAKHPKNPEVGLKPVWYSPKVFIEGADAETFSEGEMVTFINWGNLNITKIHKNADGKIISLDAKLNLENKDYKKTTKVTWLAETTHALPIPVICVTYEHLITKPVLGKDEDFKQYVNKNSKHEELMLGDPCLKDLKKGDIIQLQRRGFFICDQPYEPVSPYSCKEAPCVLIYIPDGHTKEMPTSGSKEKTKVEATKNETSAPFKERPTPSLNNNCTT-----------------------SEDSLVLYNRVAVQGDVVRELKAKKAPKEDVDAAVKQLLSLKAEYKEKTGQEY------KPGNPPAEIGQNISSNSSASILESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSS 883 HSP 2 Score: 729.939 bits (1883), Expect = 0.000e+0 Identity = 341/507 (67.26%), Postives = 413/507 (81.46%), Query Frame = 2
Query: 3020 QKQTRLGVEFKKAESLPDWYSQVITKSEMIEYYDVSGCYILRPWAYSIWERIKAHFDGRIRDSGVENCYFPMFVSHSALEKEKEHIADFAPEVAWVTKSGQSELAEPIAIRPTSETVMYPAYAKWVQSHRDLPLRLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATRKEATDEVYEILDYYAEIYTDLLAIPVVKGKKTEKEKFAGGDFTTTVEAYIEASGRAIQGATSHHLGQNFSKMFGITFEDPNNAKEKMFVHQNSWGITTRTIGVLVMVHGDDKGLVLPPKVANYQVVLVP--IMTAQTPEDKKKIILDACQDYKKTFAKAGIRSTFDSRDNYTPGWKFNHWEMKGVPLRVELGPRDIDNHQMVVVRRDTGEKITMKQEGCVDNINKLLDNIQANLYAKASKELESNIIVTKSFDEFKAKLDEKKLIQAPFCGAPACEDKIKKDSAR-EETEAGAPSMGAKSLCIPFKQPAEIKKGDKCICPGCECDAEYYTLFGRSY 4531
+KQTRLG+E KK E+L DWYSQVITKSEMIEY+D+SGCYILRPWAY+IWE IK FD I+ GVENCYFPMFVS SALEKEK H+ADFAPEVAWVT+SG++ELAEPIAIRPTSETVMYPAYAKWVQSHRDLP++LNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT +EA +EV +ILD YA++Y +LLAIPVVKG+KTEKEKFAGGD+TTT+EA+I ASGRAIQG TSHHLGQNFSKMF I FEDP EK F +QNSWG+TTRTIGV+ MVHGD+ GLVLPP+VA QVV++P I A + EDK+ +I C DY++ IR D RDNY+PGWKFNHWE+KGVP+R+E+GPRD+ + Q V VRRDTGEK+T+ + + +L++IQ L+ +AS++L+++++V + ++F+ LD K++Q PFCG CED IKK +AR ++ E GAPSMGAKSLCIPFK E++ G KC+C + A+YYTLFGRSY
Sbjct: 1009 KKQTRLGLEAKKEENLADWYSQVITKSEMIEYHDISGCYILRPWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEKEKFAGGDYTTTIEAFISASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIPGEKQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAK-CNDYRRRLLSVNIRVRADLRDNYSPGWKFNHWELKGVPIRLEVGPRDMKSCQFVAVRRDTGEKLTVAENEAETKLQAILEDIQVTLFTRASEDLKTHMVVANTMEDFQKILDSGKIVQIPFCGEIDCEDWIKKTTARDQDLEPGAPSMGAKSLCIPFKPLCELQPGAKCVC--GKNPAKYYTLFGRSY 1512 HSP 3 Score: 88.1965 bits (217), Expect = 4.070e-17 Identity = 52/137 (37.96%), Postives = 79/137 (57.66%), Query Frame = 3
Query: 2439 EQQKLYDSVTAQGDKIRSLKAEKAAKDAILAEVTVLKDLKAQYKAATGREYVAA--PTANTSKPVEKKMAPVASTTVSLSPEAESVVQKITEQGNKIRDMKTNKAAKEALQPEIDQLLKLKSEYKAITGSDYQAPGA 2843
E + LYD V AQG+ +R LKAEK+ K I V L LKAQYK TG+EY+ P + +S + + A +PEA+ + K+ QG +R +KT KA K+ + + +LL+LK++YK++ G +Y+ A
Sbjct: 822 ESKSLYDEVAAQGEVVRKLKAEKSPKAKINEAVECLLSLKAQYKEKTGKEYIPGQPPLSQSSDSSPTRNSEPAGLE---TPEAKVLFDKVASQGEVVRKLKTEKAPKDQVDIAVQELLQLKAQYKSLIGVEYKPVSA 955 The following BLAST results are available for this feature:
BLAST of TCONS_00058467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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