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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058465 ID=TCONS_00058465|Name=TCONS_00058465|organism=Clytia hemisphaerica|type=transcript|length=7394bpRun BLAST on NCBI protein sequence of TCONS_00058465-protein >TCONS_00058465-protein ID=TCONS_00058465-protein|Name=TCONS_00058465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1861bp MSQVQTQHQQYVTRSTRKPKLNYSSSFKGRSKVSNSNQDGSDGHFRRNDSRun BLAST on NCBI transcript from alignment at scaffold_311:732516..758430+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058465 ID=TCONS_00058465|Name=TCONS_00058465|organism=Clytia hemisphaerica|type=transcript|length=25915bp|location=Sequence derived from alignment at scaffold_311:732516..758430+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:732516..758430+ >TCONS_00058465 ID=TCONS_00058465|Name=TCONS_00058465|organism=Clytia hemisphaerica|type=CDS|length=111720bp|location=Sequence derived from alignment at scaffold_311:732516..758430+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058465 vs. Swiss-Prot (Human)
Match: SI1L3 (Signal-induced proliferation-associated 1-like protein 3 OS=Homo sapiens GN=SIPA1L3 PE=1 SV=3) HSP 1 Score: 621.313 bits (1601), Expect = 0.000e+0 Identity = 345/766 (45.04%), Postives = 460/766 (60.05%), Query Frame = 2
Query: 671 GISPFAGTENRTLEKSFGYFDIQSLFFKLSNATSLKSTYDE-----------GSSYNKKFTGASAAHKYMQNEK---NGENKNLRESM-IDEGDDRCNELVLSCPFFRNEMA-EPEEN----QQSGDVPSSQKQTKDIAKLISMFNRNRSFENLRHGGAFDSGYGKNRRHXXXXXXXXXXXXXKDGSQFFGWDEPKVNGKQIFDFEHIDRGALYYREYFHEKEHINLFGIDERYGPIGISIIREILPRMAIVGHTDNEKNKRYQYRVVLRTCDLNALRVTVLENSIPSTFKHGSASRPLPIKDILEFCFPDVQLSCLKYALTIPKIGEQLLKLDEQQLSLNFKIGLLYCKAGQSTEEQMYNNEKGGSEFMEFCSVIGDKVSLKGFTGYRAQLDNKNDSTGQHSLYTTFHGREIMFHVSTELPFTAHDRQQLLRKRHIGNDIVTVIFQEEGAEPFTASIMRSHFQHVFIIVQVENAHTENTRYSIAVSRSRDVPYFGPPIPPD-KFQKNAAFREFLLAKIVNAEHAAHKSEKFTHMARRTRYEYLKDLANNQVSQQTLETSNKFAF-SFTGKKKEKTHPNVSPEIWLQSGIVWSVKYDFEHDGPGTPTLLSISTKCITFIEKSTEEVVLSIPCKSVLGWRPTSHTLKIFYDVGKMAFFTMTDDDINELTYVMKRLKAVTTGCETQDLSLKRNNDGQLGFHVFYEGLVAEVEPYGLAWQAGLRKGSRLLEISGLCVGNMSHDRMILMLKRPGAVRIVVLPPALNGEPR 2902
G SP + +KSF +FD+QS+ F L+ A + + + + ++ AS AH + + E+ N +E++ D GDD N+L+LSCP FRNE+ E E N + S PSS + +S + N S L + R+ + EH+D GA YY++YF KEH N FG+DE+ GP+ +SI RE L E +YQYR++ RT +L LR ++LE++ P+ KHG+ R LP+KD LE+ P++ + CL+ AL PK+ EQLLKLDEQ L K+G+LYCKAGQS+EE+MYNNE+ G F EF S+IG+KV LKGFT Y AQLD K DSTG HSLYT + EIMFHVST LP+T ++RQQLLRKRHIGNDIVT+IFQE GA PFT +RSHFQHVFIIV+V N T+N YS+AV+RS+D P FGPPIP F+K+ FR+FLLAK++NAE+AAHKS+KF MA RTR EYLKDLA N VS ++++ KF S T KKKEKT E I W V G +L IS + + ++ T+EVV + C V+GW P S TLKIFY G F T+ + ++ +++RLK +T+G ET D++L+RN GQLGFHV Y+G VAEVE YG AWQAGLR+GSRL+EI + V ++HD+MI +L+ V++V++PP +G PR
Sbjct: 324 GRSPPEASRPWVCQKSFAHFDVQSMLFDLNEAAANRVSVSQRRNTTTGASAASAASAMASLTASRAHSLGGLDPAFTSTEDLNCKENLEQDLGDDNSNDLLLSCPHFRNEIGGECERNVSFSRASVGSPSS-GEGHLAEPALSAYRTNASISVLEVPKEQQRTQSRPRQ---------------------------------YSIEHVDLGARYYQDYFVGKEHANYFGVDEKLGPVAVSIKREKL-------EDHKEHGPQYQYRIIFRTRELITLRGSILEDATPTATKHGTG-RGLPLKDALEYVIPELNIHCLRLALNTPKVTEQLLKLDEQGLCRKHKVGILYCKAGQSSEEEMYNNEEAGPAFEEFLSLIGEKVCLKGFTKYAAQLDVKTDSTGTHSLYTMYQDYEIMFHVSTLLPYTPNNRQQLLRKRHIGNDIVTIIFQEPGALPFTPKNIRSHFQHVFIIVRVHNPCTDNVCYSMAVTRSKDAPPFGPPIPSGTTFRKSDVFRDFLLAKVINAENAAHKSDKFHTMATRTRQEYLKDLAENCVSNTPIDSTGKFNLISLTSKKKEKTKARAGAEQHSAGAIAWRVVAQDYAQGVEIDCILGISNEFVVLLDLRTKEVVFNCYCGDVIGWTPDSSTLKIFYGRGDHIFLQATEGSVEDIREIVQRLKVMTSGWETVDMTLRRNGLGQLGFHVKYDGTVAEVEDYGFAWQAGLRQGSRLVEICKVAVVTLTHDQMIDLLRTSVTVKVVIIPPFEDGTPR 1047 The following BLAST results are available for this feature:
BLAST of TCONS_00058465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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