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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058460 ID=TCONS_00058460|Name=TCONS_00058460|organism=Clytia hemisphaerica|type=transcript|length=1734bp
GTATTTTTCAgcattatataaaaaataaataaaaaacaaaaaaatatggt
CAAATACATACTTCATTATTTCCCAGTGGTTGGACGAGCTGAGCATGCGC
GAGTGATGTTCGAATTGGCAGGAGCTGaatatgaatacaaaacatATGTG
TTCGGTGGTGAATGGAATGAAGCCAAGAAAAATCATCCCAACCTGTTCCC
ACTTTCACAAGTTCCAACATTAGAAGTCGATGGTCAAGTTATTACACAGT
CATATGCCATCAATAGATACTTAGCACATGAGTTTGGATTTTATGGTGAT
TCGAATACTGAGAGAGTGCAAATTGATCAAGTGGTAGAAACACTTGTTGA
AATGTTCGCAGAAATGGCTCAGTTGATTTACATGGAACCAGATTTAGAGA
AAAAGAAAAGTGCATTGAGTGAATTCgctgaaaaattccaaaaacatTTG
AATTTCATCGAAAGATTTTTGAAGAACAATCCATCAGGTTATTTGGTTGG
AAATAAGATCACTTTAGCAGATATTTGTCTATTCGTTTTCGGCGACATTG
TCACTTTCCATTATCCAACCTTTTTTGATAACCAAccagaaatcaaaaaa
ttcatcAGCCGTTTTCATGAAATTGAACAAGTCAAAAATTATGTGGAAAA
GAAACGAACCCATAAAATGCATGTTTATTGAGAAAGAAAGTGTCAATCGT
AACCATAGAAACGGACTTAACCCAAGAAGGGATTCTGGGCAATTTAGAGA
GAACTCTTATGTTGTTTCTCAAGTGCTGGTAactagatacatagatacac
tttttatttaaaatacaTTCACAAAAAGGCTTACGTACTTTTATTTGCAA
CatcattttttaacattttgtaatttttttggtcaaatATTTCTTATAGG
TTTTTATTtagtagaaaaaagaaaatacattaattttaaatttttcttat
gtGTTCCCATGATGAATATAATTTGGGACTGTTGTTGTGTAATTTCCTAA
GATTTTGGGTGTTTTAATGTCCATAGACTAAAAAGTTATAAACTTGTTCt
caaagctttatgttcttataagaaatgtATATGCAAGATACCGCAGTCTT
TGTGCCTTACAACACTGATAGTAGAACATCGAATTAAAAAGTAGGCTACG
TCAACCTGATCTTAAAAACTTCGTAGAACgttttagaaaattaaaaaagt
aaagaatCATTTGATTATGAGAGACCTTAATTGAAAACTTACATATCTTT
CAAGAATAATAATGAAAACTTATAGATACAGTAGTATTAGgcctttttat
aaattattttgagtgcaacgatagcctcgttttgaaaccattaccaagct
TATTAAATCCCTTCGTCCCTTGATTCTTCAAATGTTACTTTTAAAGATAG
AGAAAACTTCTTGAGGAACTCAAAATGAACCTGGCAATactttgaaaacg
aggtaagcgatGAGTCGTCGAGTCGTCGATTAACCAATTTTAGCATCACG
TCAAATCAAATTGATTTATAAACGCATTATACACATAAATACCCAGCTGT
TACTGTTTCAATATGAACCTTCATGATGTATGGACATTGGTGAAAGTTAG
ATGGACATTAACCCTATtcgaactagggggggggggggctctttctgttc
ggaggtcaaactattggtaatagctcctgaaataatagagcttttgcctt
gaaattttctgtaaattcctaacttttattttgc Run BLAST on NCBI transcript from alignment at scaffold_311:703794..711491+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058460 ID=TCONS_00058460|Name=TCONS_00058460|organism=Clytia hemisphaerica|type=transcript|length=7698bp|location=Sequence derived from alignment at scaffold_311:703794..711491+ (Clytia hemisphaerica)
GTATTTTTCAgcattatataaaaaataaataaaaaacaaaaaaatatggt
CAAATACATACTTCATTATTTCCCAGTGGTTGGACGAGCTGAGCATGCGC
GAGTGATGTTCGAATTGGCAGGAGCTGaatatgaatacaaaacatATGTG
TTCGGTGGTGAATGGAATGAAGCCAAGAAAAATCATCGTTAGTGATTTCA
TCTTTTTGCCGCACAAGATTTTTCATGAGAATGATGTTTGTTcgtttcat
catgaatattctgaACTTTTTGAGTAGAATCATCCTAAATTacacatttt
attttataagaacatccaaaatttttgaagcctttttaACTTTAAGTTCT
TAAATGAGTTTTAAGACTAAAAATGTATTATTTCCACAATTTTTCGAGTA
TTTTCGTCCATTTTGctaagaaattgagtgttttagggtctacaaagcct
taaaatgttcttaacttgttctttagcaatatgttcttatatagtttgtt
cttataaaaaacggtGTATTCTAATGATATTCTTAGTTAGGATCCAAACT
CAACCAATAAAAACATGTAATACGCATctgaagcataaaatggcattttt
gtgaatgTATTGCGAGTCCTACTGTGAATTCGATTTGGAAGCATTgcaga
ttttgaaagttttgcagaaattttcgcgagcataaactttcgcaaatcgC
CTCTTTAAATATATTcgaagacatttactttcgcgcaaaaggccaaaatt
cgtgGAAATCgagaaagtttctgctcgcgaaagtttgtactgAAGTACAG
GcgaaataataatgataatgtCAATCAGGCCCTTCAAAATAAACCAATTA
TTATTCCGTAGGCGACAGCAAAAATCACTTGATATTTCTTTTAAACTTAC
AGCCAACCTGTTCCCACTTTCACAAGTTCCAACATTAGAAGTCGATGGTC
AAGTTATTACACAGTCATATGCCATCAATAGATACTTAGCACATGAGTTT
GGATTTTATGGTGATTCGAATACTGAGAGAGTGCAAATTGATCAAGTGGT
AGAAACACTTGTTGAAATGTTCGCAGAAATGGCTCAGTTGATTTACATGG
AACCAGATTTAGAGAAAAAGGTGTGAATGTTACTTTATTCTGACCCGTTC
AGTNGTAAGCGAATGGTAGGAGATATGTTAAATTATGTCTTTTATAGTTG
TAGCAGACTCTGTTTCTGATGTATTTTAATTGCTATAGAATACGTTAGTC
AGGTAGtgttatttttacaaattttgatcttGAAGCTAAAAGAGGCAACT
TTTTCATATTTGGTGGGCTCACAAATCCATTTAATTaccttgaaaagaag
aaaaatcttttctatCTGAGTTCTAGTTTAGAAGCCCGATTTTCCGCCCT
ACCAACTGAATATTAGAGTAGTCGAAAagtgagtagaaagttttatttca
caattagaataggaagggcgaaaagtgggccatCCAAACCATACaagttc
ttttataaaaacatccaaaattttttaatccttcggatgttcttaacttt
ttttaagcctaaaaatgttcatattttcaCCATCATGTTTTTGGACATTT
CCCTAAGAGATCATTTTGTATAAAGTCCACAAAGCCTGAAagtattctta
acttgttcttaatattttggccatcaaagccttctgttcttatataattt
gctCTTATTAAGAAAACGTGTAGCTAATGTATGAACAGGATATTATGTTG
ATTATTCTGTATTTTTCAgcattatataaaaaataaataaaaaacaaaaa
aatatggtCAAATACATACTTCATTATTTCCCAGTGGTTGGACGAGCTGA
GCATGCGCGAGTGATGTTCGAATTGGCAGGAGCTGaatatgaatacaaaa
catATGTGTTCGGTGGTGAATGGAATGAAGCCAAGAAAAATCATCGTTAG
TGATTTCATCTTTTTGCCTCACAAGATTTTTCATGAGAATGATGTTTGTT
cgtttcatcatgaatattctgaACTTTTTGAGTAGAATCATCCTAAATTa
cacattttattttataagaacatccaaaatttttgaagcctttttaACTT
TAAGTTCTTAAATGAGTTTTAAGACTAAAAATGTATTATTTCCACAATTT
TTCGAGTATTTTCGTCCATTTTGctaagaaattgagtgttttagggtcta
caaagccttaaaatgttcttaacttgttctttagcaatatgttcttatat
agtttgttcttataaaaaacggtGTATTCTAATGATATTCTTAGTTAGGA
TCCAAACTCAACCAATAAAAACATGTAATACGCATctgaagcataaaatg
gcatttttgtgaatgTATTGCGAGTCCTACTGTGAATTCGATTTGGAAGC
ATTgcagattttgaaagttttgcagaaattttcgcgagcataaactttcg
caaatcgCCTCTTTAAATATATTcgaagacatttactttcgcgcaaaagg
ccaaaattcgtgGAAATCgagaaagtttctgctcgcgaaagtttgtactg
AAGTACAGGcgaaataataatgataatgtCAATCAGGCCCTTCAAAATAA
ACCAATTATTATTCCGTAGGCGACAGCAAAAATCACTTGATATTTCTTTT
AAACTTACAGCCAACCTGTTCCCACTTTCACAAGTTCCAACATTAGAAGT
CGATGGTCAAGTTATTACACAGTCATATGCCATCAATAGATACTTAGCAC
ATGAGTTTGGATTTTATGGTGATTCGAATACTGAGAGAGTGCAAATTGAT
CAAGTGGTAGAAACACTTGTTGAAATGTTCGCAGAAATGGCTCAGTTGAT
TTACATGGAACCAGATTTAGAGAAAAAGGTGTGAATGTTACTTTATTCTG
ACCCGTTCAGttgcaatgggcttttccagaaataaattttacccccactg
tcgaggatattaatttttcgaagtattgaaccccctggatatcctacttt
attagtaaagacatCCACTCTtgaaaatatgctcaaccccctggatatcc
tctcttataaggATGCTTACCCCTTGATATCGtcttttttacttgaaaag
aaaCTCTACCTCacggatatccgctcccttgtagatatttaaccccctga
atatccgatatcctcaacggGGGCacggatttttttctggataaGTCCAA
TCTTGGCACGAGCACTTTCAAATTCCTTGTCGGGTTTATAATATTAAAGC
TTGGAGAGGGGGGTTGGTACTTCGACAAAACAGGTGATGGGTATGTACGA
TTAAGGTAACCTTTTTCATATCTCcaaaagtccctcaaagggatAAAAAT
TAATAGGTTATCgttttacttcgaataaacgcccctccaaATAAACCCCt
tggaggggcgtttatttgatcCAGGTAGCAGTGAGGAAGtataatatgaa
aaaaatctaattttcgcATATTTACGCATATTATTCTCttcctttccaaa
aaaaagcaAGCTTGAGTCATAATTTACACTTCTAAAATGGATAATGCATT
TAAGAGAGGGACCTGCCTACGAGAGAGTTGCagaacattttattttattt
attttataaaacattacctgtttctattgaaaaatgATGGTTCTTCTAAT
TGGTAGTAAgtggaaaaaagcaaaaatcagaggataaaatttgatgaaag
atAACGAAAGACTTGTTAACAAATAcccaaaacatatttttatctGAAAT
TTATCATGTTAACAGTTTGATTGAAAAACGACAAATGAAGTGCTTCATGT
TGAGGCGacgattttctgaattttagaaGGATTTTCTTGTGAATTGGGAA
GTCTgtttctttgtttacatttttctatcTTCCTGTTTCTGTTTTGAAGA
AATCAAACCTTCCTAAAACAGCAGATCTTCCGAATGAGGAAGAATTCTCT
ATCTTCCCGTTTGAGTGCCGAAATATTTTCGAAACCTAATCGGGAAAATC
TTCCCGTTCGCTATCCTGAATAAATTACTCTTAACAGATAGTTACATACC
ATCGTGCAAAGTAAACACGAgtgttggatttttttttctcattgatCCAA
CcttacgagaaaaaaaatctacagAAACTTGGTAAATGAGTCCCTGACTC
GAGTCGCATCCATGAAAATCTTATTGAATTTGTATATGGATTGCATTTCT
TGAAAGTGAGATAAAGTAAATATCTATTGGCTGTGTCAACCAATATATCC
CGTACTTAATTTATGACCAAAAACTGTCAATCTTTTCTTTGTAGTAGTAT
ATTTTGAATTAGCTTCCATCTCAACTACTTGTTTTTCCCCATGCAGTTTA
AAtattaggcgaaattttcgacttaaaAGTATCGTCTTGTTTACTTTTAG
AAAAGTGCATTGAGTGAATTCgctgaaaaattccaaaaacatTTGAATTT
CATCGAAAGATTTTTGAAGAACAATCCATCAGGTTATTTGGTTGGAAATA
AGGTATGtcttacattttttgaaaataaaagaatttttgtATTTCTTGGC
TTACATGATTTTAATCGATCGGTCAGTTGGTTAGACGGGGCTAAACGATT
CGTCTTTAAAGAAACCCCTTTCTCACATCCCCGAAAGAACTTTTTCCcaa
agtggggataaaaatatctaGCGAAATCACAATGGGTAtatcattctatc
tttctaAGCTAAAAAATCCTTGTCCCACAGGAAATTTTGACCTAATTTTC
CAGTCGGACGGGGGTCCCACCGGTtctgtgacacaagggtgtTTCACCCA
AGAGAGAAAATTGAGGACGTTCATCTAACGGTATTATTGAAGCGTTTGAT
GAACATTATTCTAGCTTTGTAGTAAAGTACTTATACCACTCTTCCTCTAT
GGATTTCCCCACTTACGTTTGATCCCTCTCTTAAACCCTATTAACCCcaa
ccttttttatttttgtagccccagggggggtagaatctacctcgattatt
tttgatctaatAGAGCTATGACCATGAAAATTGGTACAGATATTCTCCAT
CATGACACAAActttcagaaagaaaaaaaatttgacttccacctgtcgga
aaaaagcaaaactatatggtttacaaaaatgtctctCACAGTCGAAGCAA
TAAAGATATtgagattctgtttgaagattctgaaagataaaaggttcttc
tttaacataattgccggttttgtaTTTCCCATTAAAACTTTATGCTGAAA
ATCTATGCTGAgaatgagtaaaattttcaaaatttgatgacgtcataaat
aatgacgtcatcattttcatgATGTCATAAATGTCaaagattttttaagt
tttttgaaatcaaattgttaatacctatcacgtgtcaaaatttgaatatg
attggATCAATACTTCAGAAATTAtcgcaattttaaaattttgagtttta
agcgattttagcttggtttcacaataaagtcatgaGAGCTGACCTAGAAG
ACATATGACCCTAAAAATTTACACAattactcttaataagattttattaa
aagtcaaaaagtttcaagtcgtttcaaaatttttactccgaaatatacac
aaaagaacacaagtgtggtagattctacccccctggggctaatagggtta
atagaccttttcataaattacgtcactgacatcacttgcctcgttttaaa
attatttgcaTGGTGATTTACTCTAAGCGGATTTTATTGAATTAAACTAC
tatctattcataaaaaaattatttaatgtctcaaggtaTATATgtccgtg
acgtaatttatgaaaaggtcagAGAAGtaccaagtaccattttgaacGGG
TTTTGCATTAAGTACAGAGTCTTTGGTATAAGCCGACCGGGGAGTgcata
gtttctaccccctaTATTTAggggggtcttgggttttgacgaaccaaaag
caagggggaTGTTAAAAGTTGGACTTTCCTAATGAGGGGTTGCCAGTTAA
GTAGGGgtcttcttacctaagggggagggggtcttcttagataaggggaa
attttctttgaattatgactcttgtacaatcgtttcatttaaactgattt
tctaagggaagtgtcaaattttaaatgaatttcctaaggggggttagcac
ttaagggggggggggtcctcttacctaagggggagggggtcttcttagat
aaggggaaattttctttgaattatgactcttgtacaatcgtttcatttaa
actgattttctaagggaagtgtcaaattttaaatgaatttcctaaggggg
gttagcacttaagggggggggggtcctcttacctaaggggggatcttgac
ccctctagaaactatgtcggagtgaacccatgaccctgtaCACCTTAACT
GAATGCTCAACCTTTACACTACTGGTCGTTGACGTGGTACTACATACCTA
CTTTTACTTTTATTCATTTAGATCACTTTAGCAGATATTTGTCTATTCGT
TTTCGGCGACATTGTCACTTTCCATTATCCAACCTTTTTTGATAACCAAc
cagaaatcaaaaaattcatcAGCCGTTTTCATGAAATTGAACAAGTCAAA
AATTATGTGGAAAAGAAACGAACCCATAAAATGCATGTTTATTGAGAAAG
AAAGTGTCAATCGTAACCATAGAAACGGACTTAACCCAAGAAGGGATTCT
GGGCAATTTAGAGAGAACTCTTATGTTGTTTCTCAAGTGCTGGTAactag
atacatagatacactttttatttaaaatacaTTCACAAAAAGGCTTACGT
ACTTTTATTTGCAACatcattttttaacattttgtaatttttttggtcaa
atATTTCTTATAGGTTTTTATTtagtagaaaaaagaaaatacattaattt
taaatttttcttatgtGTTCCCATGATGAATATAATTTGGGACTGTTGTT
GTGTAATTTCCTAAGATTTTGGGTGTTTTAATGTCCATAGACTAAAAAGT
TATAAACTTGTTCtcaaagctttatgttcttataagaaatgtATATGCAA
GATACCGCAGTCTTTGTGCCTTACAACACTGATAGTAGAACATCGAATTA
AAAAGTAGGCTACGTCAACCTGATCTTAAAAACTTCGTAGAACgttttag
aaaattaaaaaagtaaagaatCATTTGATTATGAGAGACCTTAATTGAAA
ACTTACATATCTTTCAAGAATAATAATGAAAACTTATAGATACAGTAGTA
TTAGgcctttttataaattattttgagtgcaacgatagcctcgttttgaa
accattaccaagctTATTAAATCCCTTCGTCCCTTGATTCTTCAAATGTT
ACTTTTAAAGATAGAGAAAACTTCTTGAGGAACTCAAAATGAACCTGGCA
ATactttgaaaacgaggtaagcgatGAGTCGTCGAGTCGTCGATTAACCA
ATTTTAGCATCACGTCAAATCAAATTGATTTATAAACGCATTATACACAT
AAATACCCAGCTGTTACTGTTTCAATATGAACCTTCATGATGTATGGACA
TTGGTGAAAGTTAGATGGACATTAACCCTATtcgaactaggggggggggg
ggctctttctgttcggaggtcaaactattggtaatagctcctgaaataat
agagcttttgccttgaaattttctgtaaattcctaacttttattttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058460-exon-scaffold_311-1491911889:703794..703980 | TCONS_00058460-exon-scaffold_311-1491911889:703794..703980 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1510915933:703794..703980 | TCONS_00058460-exon-scaffold_311-1510915933:703794..703980 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1575043694:703794..703980 | TCONS_00058460-exon-scaffold_311-1575043694:703794..703980 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1491911889:706454..706671 | TCONS_00058460-exon-scaffold_311-1491911889:706454..706671 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1510915933:706454..706671 | TCONS_00058460-exon-scaffold_311-1510915933:706454..706671 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1575043694:706454..706671 | TCONS_00058460-exon-scaffold_311-1575043694:706454..706671 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1491911889:708194..708295 | TCONS_00058460-exon-scaffold_311-1491911889:708194..708295 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1510915933:708194..708295 | TCONS_00058460-exon-scaffold_311-1510915933:708194..708295 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1575043694:708194..708295 | TCONS_00058460-exon-scaffold_311-1575043694:708194..708295 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1491911889:710265..711491 | TCONS_00058460-exon-scaffold_311-1491911889:710265..711491 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1510915933:710265..711491 | TCONS_00058460-exon-scaffold_311-1510915933:710265..711491 | Clytia hemisphaerica | exon |
| TCONS_00058460-exon-scaffold_311-1575043694:710265..711491 | TCONS_00058460-exon-scaffold_311-1575043694:710265..711491 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:703794..711491 + |
Blast
BLAST of TCONS_00058460 vs. Swiss-Prot (Human)
Match: GSTA1 (Glutathione S-transferase A1 OS=Homo sapiens GN=GSTA1 PE=1 SV=3) HSP 1 Score: 87.0409 bits (214), Expect = 4.778e-19 Identity = 63/203 (31.03%), Postives = 101/203 (49.75%), Query Frame = 1
Query: 61 LHYFPVVGRAEHARVMFELAGAEYEYKTYVFGGEWNEAKKNHPNLFPLSQVPTLEVDGQVITQSYAINRYLAHEFGFYGDSNTERVQIDQVVETLVEMFAEMAQLIYMEPDLEKKKSALSEFAEKFQ-KHLNFIERFLKNNPSGYLVGNKITLADICLFVFGDIVTFHYPTFFDNQPEIKKFISRFHEIEQVKNYVEKKRTHK 666
LHYF GR E R + AG E+E K ++ E + +N L QVP +E+DG + Q+ AI Y+A ++ YG ER ID +E + ++ EM L+ + P E+K + L+ EK + ++ E+ LK++ YLVGNK++ ADI L V + + P +K +R + VK +++ K
Sbjct: 7 LHYFNARGRMESTRWLLAAAGVEFEEK-FIKSAEDLDKLRNDGYLM-FQQVPMVEIDGMKLVQTRAILNYIASKYNLYGKDIKERALIDMYIEGIADL-GEMILLLPVCPP-EEKDAKLALIKEKIKNRYFPAFEKVLKSHGQDYLVGNKLSRADIHLVELLYYVEELDSSLISSFPLLKALKTRISNLPTVKKFLQPGSPRK 205
The following BLAST results are available for this feature:
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