TCONS_00058457 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058457
Unique Name	TCONS_00058457
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	957

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:610687..615642+

transcript sequence

>TCONS_00058457 ID=TCONS_00058457|Name=TCONS_00058457|organism=Clytia hemisphaerica|type=transcript|length=957bp
tcagcTTCAGAGAATGTTTATAAATGAAACTTATCAACTTAggccaattt
tttaaatacaaaCAGAATCTTCAATTGAATGTTAGATTGGTAAGGAATAT
AAGCGATTTAAAACATAAAGCATTGAAAGTTGCTTTCTTTGGAACTGATG
AATTTAGTTTAACACCATTGGAAAAACTTGTTCAATTGAGaaacGAAACA
AACCTTGTAGAGGAGGTGGCAGTCGTTTCTCAATTTGAAACCCAAAAGAA
ATCTACTAAAGGCATTATTCCAGTAGTCCATAGATATGTCAGAGAAAATG
AACTACCAAAAATTCATTGGGAAGAGTTGAAGATAAATCCAAAacatCAT
CTCGATCATGATTTGGCTATAGTTGCTTCTTTCGGTGAATTCATCCCTTC
GAAGGTTATCAAGTGTTTTCCAAAGGGTGCTATCAATATTCATCCTTCCT
TGCTACCAAGATGGCGGGGAGCTTCACCACTGATCCATACTATCCTTGCC
GGTGATACAGTGACTGGAATTTCGTTCATTGAAATCTCACCCAAAAAATT
TGATATTGGAAAGATCCTCTATCAAGCAGAGTTCCAGATCCCACCTCGAT
GTACAACTGAAAATTTGAGAGacattttatcaaataaagCTGCTGACTTG
CTACCAGaagtaattgacaatttacCAACGTTGAGGGAGAATTCAATTGA
CCAAGATGACTCTGAAACAACTCATGGTAAGGAAGATCATATTGAGACCT
CCCAATTTGAAGGGCTGTTCCACTTTTGGACACACGTGTTCACCCCATAT
CACGTTAACTCGACTGGTTTTTACGCTGTTTTATAGCCCTGCaatacaac
tgtcaatcatttttaagaaaactgattGGATGATTAATGTCACGTGGCCG
GTCAATATTTCCCCATAGTGACCagttatgaaattgacatcattaaaatg
tcaattt

Run BLAST on NCBI

transcript from alignment at scaffold_311:610687..615642+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058457 ID=TCONS_00058457|Name=TCONS_00058457|organism=Clytia hemisphaerica|type=transcript|length=4956bp|location=Sequence derived from alignment at scaffold_311:610687..615642+ (Clytia hemisphaerica)
tcagcTTCAGAGAATGTTTATAAATGAAACTTATCAACTTAggccaattt
tttaaatacaaaCAGAATCTTCAATTGAATGTTAGATTGGTAAGGAATAT
AAGCGATTTAAAACATAAAGCATTGAAAGTTGCTTTCTTTGGAACTGATG
AATTTAGTTTAACACCATTGGAAAAACTTGTTCAATTGAGGTGAGTTATT
TATCATAAGTCTTCTTTTTTAAAAGTAATGTTTGTTTATTTATATGTTAT
TTTACATTAATGCCAGTGCTGAATGTACCTTCATCTGGGCCGACCAATGT
CGTGTCAAGAGAAGTAGGTACCACTGCCCTGATCTTCAAGGGTCTTTGGT
GCGGTATGGACAGCTGTTATGTTCCAACTAAAAGAAATGCAGTATTTGTC
CCATACATTTGATTTCTCATGAAAGTGTGTGCTTTACTGAGATATTACAA
TTTCTACTACAAACAAGTTCTAGCCTCTTTAGCGCATCTCActaacaaat
ttatttttagaaacGAAACAAACCTTGTAGAGGAGGTGGCAGTCGTTTCT
CAATTTGAAACCCAAAAGGTAACACATGAATTACAAACTTAAAAATCCAA
TCAGTATGTGGTActtactttttggacctaccccggtggggtggaggtcc
tataaattaacccgtgttcgttagttagttagttcgttcgttagttacca
ccttttctcgagattggctcattcaatttttctgattttttgcacaaagg
tgcattactataaaccctcgaatgtgacggagcccgattttcgaaaaaaa
aaattttccggccggtagaaccggaaatgtcccgaaaaagcggttttttg
tcGAGAttttttcattagttttttgcgattttttgcacatagatgcacat
tagtactgccgaaaaggtgtcgaaaaccgtttgccgaaaaaaaaattttt
ccgggcTGTAGAACCGGAattgtgccggaaatcgtcgttttttcacattt
ccgtcacgttttttcaacttatttaattgtttctttacagaaaaatgttc
tttatgatgatgcccaaaacttagcatcgtttgatttccaaaaactcatc
ctttgaatccggaattccttaaaaatcgccggaacagccgaaaaccggcg
taaaacggttttccttcattttagGAACTTATActtgacagattttcatg
attttttgcacaatgatgtaaaatggcaatgcccaaaatgtgacagggcc
caattttcgaaaaaggaatttttccggccgctagaaccggaaatgtcccg
aaaaaagcggttttttgagatttttttttttttgcgattttttgcacata
gatgcacattagtactgccgaaaaggtgtcgaaaaccgtttgtcgaaaaa
aaattttttccggtctgtagaacctgAAATGTGCAGGAAATcttcgtttt
tttcacatttccgtcacattttttcaacttatttaattgtttctttacag
aaaaatgttctttatgatgatgcccaaaacttagcattgtttgattNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTAAAAATcgcaaacgactaattttaatagatcgt
cactatttgtgttctgaatgattgtttaacggtcatgctcacgtagatat
caattaaattatatatgtgttaaatgcataaccaggtaggtccataaaag
tatcacttgtttgcttaattttcaaagtaaatttttttttcacggtAAGA
ATTTTCTCTCTCTTATCCTCTTGTATATTGactaaattttatttattatt
tttctggAGTAGAAGAAGCAATACCTTGTATTGAAACtgatatgaaaaca
aaaaatatgtaaaatcatcaaaatccatagattattttcatttcatccaT
AGAAATCTACTAAAGGCATTATTCCAGTAGTCCATAGATATGTCAGAGAA
AATGAACTACCAAAAATTCATTGGGAAGAGTTGAAGATAAATCCAAAGTA
TGCTTTTTTTTAAGAGAATCTAAATTTGGAAGGTCTAAATTGTCACTGAC
ATAGACCCCAAATGAGACATATCTTTTTCGTTATTAAACAGTCTTCCTCC
ACCACTAAGATCGTCTTTTTGAACCCCTGGATTTCACTTCCTTGAGCTAG
GCAAATGTAGGTATGTCTTAAAATAGGGTTTCATATGGACCCCCTCGTCG
TCGTACAACCTTCTCAAcatggatttttgaaaaagcctAATTAAAATCCA
TCTTTTAATAAATGACTTAATTaattttaaatactttttttaaagacatC
ATCTCGATCATGATTTGGCTATAGTTGCTTCTTTCGGTGAATTCATCCCT
TCGAAGGTTATCAAGTGTTTTCCAAAGTAAGTTACATTGTCTgtctttta
ttgacaattttctttatcaaaacaCCCTTTTGGTACAGAtgcaatttttg
tttacattatgTGAACAAGATGGGAGCTgaagttttcaaaattcatttct
aTTTGCAAACTAAAGCTACCTGATAATGATATACAAGTAAGTAAAgcaca
acctcgttccctgcgcactatcagcttttttatgcttactgatagtgcTA
GACAAAAGAAGttgcatcagccaacaccagggtattctctggcgccaatc
agtaacgtaaataaagcctgaatacacggggacgaggttgagtaAAGCAA
TGAATCTCTTTGACTTTTGTTCTTGATTTATATGTTTCTTACTTTTGATT
TTATGAAACTCATGATTTATTACTATTGCAGGGGTGCTATCAATATTCAT
CCTTCCTTGCTACCAAGATGGCGGGGAGCTTCACCACTGATCCATACTAT
CCTTGCCGGTGATACAGTGACTGGAATTTCGTTCATTGAAATCTCACCCA
AAAAGTATGTTGACATTTTTCTAAAGAAGATTATATTGATTATTTACTAT
AATgtcaagaaagtttttttggttATATACAAAAAACTATTGTTTTCCTT
GTTGGTTATAACATCATCCCCTCTACTATAGAAAGTCTTTTAACGTTGCT
GGGCCAAGTGTTGGAACGTGGAGTTTTTCTGTACaatgtttttccttttt
gatgaaataattttgtttcGATTTAGATTTGATATTGGAAAGATCCTCTA
TCAAGCAGAGTTCCAGGTAGATCTATAGTTCATTCTGCCTTGTGGAAACA
ATGCTATTGCAATttaactaccttaagggaagaaatttttgcggagcTTA
ATTTCGCGGCTCACAGCTTGAAATTCGaaagttttgcggaatttaatttc
gcggttgagaggattttttgtttacaatatggcctaaaaaggcaaatttt
aaaaatgaatggtctttagagcaaaataaataaaatactgaATACtcttc
ggggggggggggggtttttttttccCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggtattatTCTATC
CCTTATTTCAAGCTTTTAGGATGAATTTCTAATTTCTGTACCTCTTCAGT
TTACAGGATTTGTTTGCCAATACactcattttttataagcatacgggaaa
TTGGGACGAGGCTCAATttgcttagcaaaatctcattttcagccttaatt
tatgcttTTTTATATGCGTAGACTTTCTTGTAGATTCGTTAATTTTCTTT
GGATTCATGgaaatttcatgaatttttaagtcggaacattgattcggctc
aaagaatgaaagttttctttgtaatttggcacTGCAGggaaaatctttgg
tctaaAAAGCTCAAATAGCTTGAAAAGTAACCCTTAAAGGTCAGTGTTTT
AGAAGAGCTACATGAATTTCttgcatttcagcttggaggtatgcttagca
ttttGCATATTATTTTTGCTGAATTCGAGCATAAGTATGCTTATTATAAA
CGTTGATTaacgtttttgaaaaaaaatatgacatctaatatttttcatat
tttatttttatcaaataattaGATCCCACCTCGATGTACAACTGAAAATT
TGAGAGacattttatcaaataaagCTGCTGACTTGGTAAGAGAAGTTCAA
TTTTGAGTATTTCACCAGTACTTTGGTTGCGATTTCAGACTTTTTATTTA
TCCAAGAATATCGAATAAATTCAGTTAAAGTTAAAGTCAGTTAAAGGTGT
TTTTGAATTAGGtattattgttttgatcatCCTATTTCGATTGGAAATTT
CAATGTGGTTCCAGTCCATGCTTCGAAAAGACGGGCAAACAGTGTGCGTT
TTATTAAGTTCCagtcgacgctctctaattcgatgttctaCTATTCTTAG
ATTTATTGAAAGTCGCCATTAGTAAGAAAGTctcccttttttgaaaaaaa
aatctaattccttttgaaaatcagagcgtcaactgtattattTTTGTAGC
TACCAGaagtaattgacaatttacCAACGTTGAGGGAGAATTCAATTGAC
CAAGATGACTCTGAAACAACTCATGGTAAGGAAGATCATATTGAGACCTC
CCAATTTGAAGGGCTGTTCCACTTTTGGACACACGTGTTCACCCCATATC
ACGTTAACTCGACTGGTTTTTACGCTGTTTTATAGCCCTGCaatacaact
gtcaatcatttttaagaaaactgattGGATGATTAATGTCACGTGGCCGG
TCAATATTTCCCCATAGTGACCagttatgaaattgacatcattaaaatgt
caattt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036835	XLOC_036835	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:610687..615642 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.376434	0.624027	0.833789	2.16709	3.5045	2.61479	3.18267	3.24184	0.683517	1.96945	0.807634	1.01818	1.95862	1.92937	0.651864	0.426587	1.10369	0.619456	0.912752	1.12697	1.1273	2.2468	0.79396	1.2314	1.04377	0.182212	0.844346	0.612259	0.262565	1.08725

Blast

[Close]

BLAST of TCONS_00058457 vs. Swiss-Prot (Human)
Match: FMT (Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens GN=MTFMT PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.981e-39
Identity = 79/211 (37.44%), Postives = 120/211 (56.87%), Query Frame = 3

Query:  126 KVAFFGTDEFSLTPLEKLVQLR--NETNLVEEVAVVSQFETQKKSTKGIIPVVHRYVRENELPKIHWEELKINPKHHLDHDLAIVASFGEFIPSKVIKCFPKGAINIHPSLLPRWRGASPLIHTILAGDTVTGISFIEISPKKFDIGKILYQAEFQIPPRCTTENLRDILSNKAADLLPEVIDNLPTLRENSIDQDDSETTHGKEDHIETS 752
            +V FFGTD+F+   L  L   R   E  L++++ VV+       S KG+   V +Y  +++LP   W ++        ++D+ +VASFG  +   +I  FP G +N+HPS LPRWRG +P+IHT+L GDTVTG++ ++I PK+FD+G IL Q    +PP+ T + L  +LS   A++L  V+ NLP    N   Q     T+  +    TS
Sbjct:   49 RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVT---MPSPSPKGL--PVKQYAVQSQLPVYEWPDVGSG-----EYDVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTS 249

The following BLAST results are available for this feature:

BLAST of TCONS_00058457 vs. Swiss-Prot (Human)

BLAST of TCONS_00058457 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FMT	1.981e-39	37.44	Methionyl-tRNA formyltransferase, mitochondrial OS...	[more]

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TCONS_00058457 (transcript) - C. hemisphaerica