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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058456 ID=TCONS_00058456|Name=TCONS_00058456|organism=Clytia hemisphaerica|type=transcript|length=1888bpRun BLAST on NCBI protein sequence of TCONS_00058456-protein >TCONS_00058456-protein ID=TCONS_00058456-protein|Name=TCONS_00058456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp MKLINLGQFFKYKQNLQLNVRLVRNISDLKHKALKVAFFGTDEFSLTPLERun BLAST on NCBI transcript from alignment at scaffold_311:610500..619845+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058456 ID=TCONS_00058456|Name=TCONS_00058456|organism=Clytia hemisphaerica|type=transcript|length=9346bp|location=Sequence derived from alignment at scaffold_311:610500..619845+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_311:610500..619845+ >TCONS_00058456 ID=TCONS_00058456|Name=TCONS_00058456|organism=Clytia hemisphaerica|type=CDS|length=12924bp|location=Sequence derived from alignment at scaffold_311:610500..619845+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058456 vs. Swiss-Prot (Human)
Match: FMT (Methionyl-tRNA formyltransferase, mitochondrial OS=Homo sapiens GN=MTFMT PE=1 SV=2) HSP 1 Score: 217.624 bits (553), Expect = 1.483e-63 Identity = 119/336 (35.42%), Postives = 189/336 (56.25%), Query Frame = 1
Query: 313 KVAFFGTDEFSLTPLEKLVQLR--NETNLVEEVAVVSQFETQKKSTKGIIPVVHRYVRENELPKIHWEELKINPKHHLDHDLAIVASFGEFIPSKVIKCFPKGAINIHPSLLPRWRGASPLIHTILAGDTVTGISFIEISPKKFDIGKILYQAEFQIPPRCTTENLRDILSNKAADLLPEVIDNLPTLRENSIDQDDSETTHAPKISKTVGYIDFHEQNCDEIERTYRAVGQRVGIKSLWGGKQVKLENIVDI--------KMENESEITPGTCQYSKKERMIWIKCKTGWVGVDGFQFDQRKKIISAQSFYNGYV----IDKQTGKPGSTKFETM 1278
+V FFGTD+F+ L L R E L++++ VV+ S KG+ V +Y +++LP W ++ ++D+ +VASFG + +I FP G +N+HPS LPRWRG +P+IHT+L GDTVTG++ ++I PK+FD+G IL Q +PP+ T + L +LS A++L V+ NLP N Q T+APKIS I + EQ ++I R YRA+G + +++LW +KL ++V++ K+ ++ I PG+ Y K+ +++ + CK GW+GV KK ++A FYNGY+ +P +F+T+
Sbjct: 49 RVLFFGTDQFAREALRALHAARENKEEELIDKLEVVT---MPSPSPKGL--PVKQYAVQSQLPVYEWPDVGSG-----EYDVGVVASFGRLLNEALILKFPYGILNVHPSCLPRWRGPAPVIHTVLHGDTVTGVTIMQIRPKRFDVGPILKQETVPVPPKSTAKELEAVLSRLGANMLISVLKNLPESLSNGRQQPMEGATYAPKISAGTSCIKWEEQTSEQIFRLYRAIGNIIPLQTLWMANTIKLLDLVEVNSSVLADPKLTGQALI-PGSVIYHKQSQILLVYCKDGWIGVRSVML---KKSLTATDFYNGYLHPWYQKNSQAQPSQCRFQTL 370 The following BLAST results are available for this feature:
BLAST of TCONS_00058456 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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