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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058453 ID=TCONS_00058453|Name=TCONS_00058453|organism=Clytia hemisphaerica|type=transcript|length=702bp
gcgagtttgtgaaaaaaaaattgtaaccaGTTGAATTTGGGTTTGTTACA
AATTGGAGTGAAGCTTTCTCATTTTTGTTGTTGATAATCAATCAGAAGAA
AGAATGGCAAAGAAACCAATTTCCTTAGAAGACTTCCAAGACTTCTCTAT
CAACAGTTTTGCAAAGACGAAAACTCACCCAAAGAGTCCCTACGATCCCA
TCACTATGAAGACACTTAATGTACCTCTCAGTACCTACCAATCACAAATC
CAAGTCACAACATCTGCTGAAAATAATACACCAACCAAACTGTCAAGGAA
ACATAAAAAGAAGAGGAAAGTTGATACAACGACTTTTCTTGGATCAGATG
AGGAACATGAAGAATCAACTGGAACTGCAGAAGAAACAATACCCGAAGAA
ACCCCACCCAGACCCAAAAAGACGTCTACTCCTCTCCCATCACCCTGCAA
TCACGACGCAGAATTAAAGAAAGCAAATAAAAAAATCGAAGAGTTGAGTC
AAAAATGCAAGAGCACTGAGAAAAAATGTGAGACCTTTGAAAAGAGATGT
GAAACCTTGGAGAGCAAGATAGAGAATTTGCAGTCTACtagaatcaaaaa
gaaaaaactcaaagCTTCAAATAAAGCAAAGACCTTTGTACGCAAATCAG
TCAAAATTGCCCTGGAGGATGGAATGAACTGGGACCTTAGTGATGGTAAA
AG Run BLAST on NCBI protein sequence of TCONS_00058453-protein >TCONS_00058453-protein ID=TCONS_00058453-protein|Name=TCONS_00058453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
MAKKPISLEDFQDFSINSFAKTKTHPKSPYDPITMKTLNVPLSTYQSQIQ
VTTSAENNTPTKLSRKHKKKRKVDTTTFLGSDEEHEESTGTAEETIPEET
PPRPKKTSTPLPSPCNHDAELKKANKKIEELSQKCKSTEKKCETFEKRCE
TLESKIENLQSTRIKKKKLKASNKAKTFVRKSVKIALEDGMNWDLSDGK Run BLAST on NCBI transcript from alignment at scaffold_311:598861..601276+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058453 ID=TCONS_00058453|Name=TCONS_00058453|organism=Clytia hemisphaerica|type=transcript|length=2416bp|location=Sequence derived from alignment at scaffold_311:598861..601276+ (Clytia hemisphaerica)
gcgagtttgtgaaaaaaaaattgtaaccaGTTGAATTTGGGTTTGTTACA
AATTGGAGTGAAGCTTTCTCATTTTTGTTGTTGATAATCAATCAGAAGAA
AGAATGGCAAAGAAACCAATTTCCTTAGAAGACTTCCAAGACTTCTCTAT
CAACAGTTTTGCAAAGACGAAAACTCACCCAAAGAGTCCCTACGATCCCA
TCACTATGAAGACACTTAATGTACCTCTCAGTACCTACCAATCACAAATC
CAAGTCACAACATCTGCTGAAAATAATACACCAACCAAACTGTCAAGGAA
ACATAAAAAGAAGAGGAAAGTTGATACAACGACTTTTCTTGGATCAGATG
AGGAACATGAAGAATCAACTGGAACTGCAGAAGAAACAATACCCGAAGAA
ACCCCACCCAGACCCAAAAAGACGTCTACTCCTCTCCCATCACCCTGCAA
TCACGACGCAGAATTAAAGAAAGCAAATAAAAGTATGTTTTGCACTTATT
TTTATAGCTGGACTTAAATTGAGTATCTATTCATTGTAGTCTTAAGGGTT
Cccagcggtcagggaaaacctggaaaagtcagggaagttttgaaaaatct
ctcaAAAGTCAGATCCATCTATTGTAAAACTGATAAGGGTGTTATTGAAA
TGCGCGATTATTTTTTTACTACATCATAAAAAAAGTACTGTTTTTAGTCA
gggaaaaaaggtctattttcatCTTGAGCCAGGGAAAATCTAGCTTTTTT
CAGCACTTTTGTCAGGGAAAAAGGGTGTATTTTTCaccaaaagtcaggga
aaatacCTCTGGAGGAACTGCTGGGAACCTAAgtctatttttttttggaa
tccttgTATTCTCTTTGGCCCATCCCATAATTTGCCTGTATAAGAGGGGT
GGAAAATTCAAGGCAATTGGATCAAAAATGGCAAAGAAAAGGGAATTTTA
AGACCTTTTGCATAAATTTATGTGttttccttgaaattttcaatGACCAC
tggaataaaaaatttatttccaaGGCTAGAACAAATTCTAAAATGTATGT
CATCTGAAGAGGGTTAATggaaattttctgaaaaggCACTTTCAGATACG
TCGAGATCGATATCGGCGTATACGGCGAGTATGTCTAACTGCGTCCGCTG
AAggtcaaaaagggcactttttctcctatactttcatgaaaaagcctgat
tttacaatattttccacAATTTTTGAAGGGCAGGcataaaaaatgtcttt
gtatGTTATTATATAATTTGAGCTTGTGCAGGGTCTgttaaaaagttaaa
tatcaAATTGGATTTTGCCATTTTCAGCTTACAAATactgggcttttcca
gaaaatgtttgTACACCCTGTCACTATAAGACTGACTGACTAGAGTAAGG
GTGGAGGGATATGGTTGTCTGGCGATAgcgaaaatcattaaaatttccCT
TGTCCGGAGGTAAAACCTGTTGTCACTTTaaagtgttttcactgtttgtc
agtgaggcggcaatcacaaatatcttcatttcacGTCATTTCATGCCtga
aaagtgagtcggtcggtcggtcgggttcgggttttttgaaaatccgaCAA
ATTTGCCGACTCTCTGACTCagatttttacaattttcatgagtCGGTCGG
GTGAtgcgaaacaaagatatttgtggTTGCCGcctgaggtaaatctattt
caaagaccagaaaagtttgtttacattcattCAACTTTTACATGCCCCTT
TAACTTTTTCGTGCATTTCCGGTACAAGGCCTAGTCATGGTACATAAAGA
TGTGAtacttttttggaaatttggcAAAGTTATTTAGCCTTTCTAATCAT
AATGTCAGTTGACTGAAAAGGGCTGGGTGAAAACCTGTCAACAAAGTCAT
TCTTGTTTGCAAAAAGGTTATTTTTTGGACTCAACCATAACAAAACTCAA
ACTTGTGAAGCACAATGTTTTGTCTATTTAAGTTATTTGGTAAAGATCAG
AAATTTAGTAAGTTTATATAATTTCTTAATTTCAGAAATCGAAGAGTTGA
GTCAAAAATGCAAGAGCACTGAGAAAAAATGTGAGACCTTTGAAAAGAGA
TGTGAAACCTTGGAGAGCAAGATAGAGAATTTGCAGTCTACtagaatcaa
aaagaaaaaactcaaagCTTCAAATAAAGCAAAGGTTTGTTGTTGATGTT
ATTATTAGTAATTTAGagttattttttttgtcaacgGTGATAAGATTAAA
GAGATTAAGGCATGGCAGCCAAGAGAAATTCCAATAGTCAGCTCTCTAac
agtttttattttgtaaaatataacattttctttttcttattgtAGACCTT
TGTACGCAAATCAGTCAAAATTGCCCTGGAGGATGGAATGAACTGGGACC
TTAGTGATGGTAAAAG Coding sequence (CDS) from alignment at scaffold_311:598861..601276+ >TCONS_00058453 ID=TCONS_00058453|Name=TCONS_00058453|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_311:598861..601276+ (Clytia hemisphaerica)
ATGGCAAAGAAACCAATTTCCTTAGAAGACTTCCAAGACTTCTCTATCAA
CAGTTTTGCAAAGACGAAAACTCACCCAAAGAGTCCCTACGATCCCATCA
CTATGAAGACACTTAATGTACCTCTCAGTACCTACCAATCACAAATCCAA
GTCACAACATCTGCTGAAAATAATACACCAACCAAACTGTCAAGGAAACA
TAAAAAGAAGAGGAAAGTTGATACAACGACTTTTCTTGGATCAGATGAGG
AACATGAAGAATCAACTGGAACTGCAGAAGAAACAATACCCGAAGAAACC
CCACCCAGACCCAAAAAGACGTCTACTCCTCTCCCATCACCCTGCAATCA
CGACGCAGAATTAAAGAAAGCAAATAAAAAAATCGAAGAGTTGAGTCAAA
AATGCAAGAGCACTGAGAAAAAATGTGAGACCTTTGAAAAGAGATGTGAA
ACCTTGGAGAGCAAGATAGAGAATTTGCAGTCTACtagaatcaaaaagaa
aaaactcaaagCTTCAAATAAAGCAAAGACCTTTGTACGCAAATCAGTCA
AAATTGCCCTGGAGGATGGAATGAACTGGGACCTTAGTGATGGTAAAATG
GCAAAGAAACCAATTTCCTTAGAAGACTTCCAAGACTTCTCTATCAACAG
TTTTGCAAAGACGAAAACTCACCCAAAGAGTCCCTACGATCCCATCACTA
TGAAGACACTTAATGTACCTCTCAGTACCTACCAATCACAAATCCAAGTC
ACAACATCTGCTGAAAATAATACACCAACCAAACTGTCAAGGAAACATAA
AAAGAAGAGGAAAGTTGATACAACGACTTTTCTTGGATCAGATGAGGAAC
ATGAAGAATCAACTGGAACTGCAGAAGAAACAATACCCGAAGAAACCCCA
CCCAGACCCAAAAAGACGTCTACTCCTCTCCCATCACCCTGCAATCACGA
CGCAGAATTAAAGAAAGCAAATAAAAAAATCGAAGAGTTGAGTCAAAAAT
GCAAGAGCACTGAGAAAAAATGTGAGACCTTTGAAAAGAGATGTGAAACC
TTGGAGAGCAAGATAGAGAATTTGCAGTCTACtagaatcaaaaagaaaaa
actcaaagCTTCAAATAAAGCAAAGACCTTTGTACGCAAATCAGTCAAAA
TTGCCCTGGAGGATGGAATGAACTGGGACCTTAGTGATGGTAAAATGGCA
AAGAAACCAATTTCCTTAGAAGACTTCCAAGACTTCTCTATCAACAGTTT
TGCAAAGACGAAAACTCACCCAAAGAGTCCCTACGATCCCATCACTATGA
AGACACTTAATGTACCTCTCAGTACCTACCAATCACAAATCCAAGTCACA
ACATCTGCTGAAAATAATACACCAACCAAACTGTCAAGGAAACATAAAAA
GAAGAGGAAAGTTGATACAACGACTTTTCTTGGATCAGATGAGGAACATG
AAGAATCAACTGGAACTGCAGAAGAAACAATACCCGAAGAAACCCCACCC
AGACCCAAAAAGACGTCTACTCCTCTCCCATCACCCTGCAATCACGACGC
AGAATTAAAGAAAGCAAATAAAAAAATCGAAGAGTTGAGTCAAAAATGCA
AGAGCACTGAGAAAAAATGTGAGACCTTTGAAAAGAGATGTGAAACCTTG
GAGAGCAAGATAGAGAATTTGCAGTCTACtagaatcaaaaagaaaaaact
caaagCTTCAAATAAAGCAAAGACCTTTGTACGCAAATCAGTCAAAATTG
CCCTGGAGGATGGAATGAACTGGGACCTTAGTGATGGTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058453-exon-scaffold_311-1491911889:598861..599342 | TCONS_00058453-exon-scaffold_311-1491911889:598861..599342 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1510915933:598861..599342 | TCONS_00058453-exon-scaffold_311-1510915933:598861..599342 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1575043694:598861..599342 | TCONS_00058453-exon-scaffold_311-1575043694:598861..599342 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1491911889:600896..601044 | TCONS_00058453-exon-scaffold_311-1491911889:600896..601044 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1510915933:600896..601044 | TCONS_00058453-exon-scaffold_311-1510915933:600896..601044 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1575043694:600896..601044 | TCONS_00058453-exon-scaffold_311-1575043694:600896..601044 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1491911889:601206..601276 | TCONS_00058453-exon-scaffold_311-1491911889:601206..601276 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1510915933:601206..601276 | TCONS_00058453-exon-scaffold_311-1510915933:601206..601276 | Clytia hemisphaerica | exon |
| TCONS_00058453-exon-scaffold_311-1575043694:601206..601276 | TCONS_00058453-exon-scaffold_311-1575043694:601206..601276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:598861..601276 + |
Blast
The following BLAST results are available for this feature:
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