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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058442 ID=TCONS_00058442|Name=TCONS_00058442|organism=Clytia hemisphaerica|type=transcript|length=3092bpRun BLAST on NCBI transcript from alignment at scaffold_311:344467..347666+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058442 ID=TCONS_00058442|Name=TCONS_00058442|organism=Clytia hemisphaerica|type=transcript|length=3200bp|location=Sequence derived from alignment at scaffold_311:344467..347666+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058442 vs. Swiss-Prot (Human)
Match: ZN227 (Zinc finger protein 227 OS=Homo sapiens GN=ZNF227 PE=1 SV=1) HSP 1 Score: 319.701 bits (818), Expect = 4.754e-94 Identity = 157/305 (51.48%), Postives = 202/305 (66.23%), Query Frame = -3
Query: 2074 EKKHHCQECGKGFYFSSHLKLHLRKHSGETPHKCTICGKGFTRANSLKIHIRRHTGEKPFKCEYEDCGKAFPTSSSYQRHVRTHTGEKPYECEECGKTFVASNNLQRHQWIHMGLKPFKCDICDKAFNQMSSLNSHRRIHTGEKPFRCEVCGLEFSVSSNLQRHTKTHGNEKPYQCEFCDKAFLRSSDLQRHVRTHTGEKPYKCDVCGLTFGSLGNAQRHHRIHTGEKPYKCDICGKAFIQSGDLKRHLKTH-DEKLYNCTVCGEKFDRSTALKTH--TCSGPKPYSCENCTQTFNQPLDLQTHQ 2979
EK + C+ECGKGF ++H +H R H+GE P+KC +CGKGF+ + L H R HTGEKP+KCE CGK F ++ H R HTGEKPY+C+ECGK F ++NLQ HQ +H G K FKC+ C K F+Q S L +H+R+HTGEKP+RC+VCG +FS SSNL+ H H EKPY+CE C K F S+L H R H+GEKPYKC+ C +F + + H R+HTGEKPYKC +CGK F QS L+ H + H EK Y C VCG+ F S+ H +G KPY CE C + F + L+L+ HQ
Sbjct: 405 EKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCE--ACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQ 707 HSP 2 Score: 295.434 bits (755), Expect = 2.237e-85 Identity = 154/307 (50.16%), Postives = 193/307 (62.87%), Query Frame = -3
Query: 2074 PPEKKHHCQECGKGFYFSSHLKLHLRKHSGETPHKCTICGKGFTRANSLKIHIRRHTGEKPFKCEYEDCGKAFPTSSSYQRHVRTHTGEKPYECEECGKTFVASNNLQRHQWIHMGLKPFKCDICDKAFNQMSSLNSHRRIHTGEKPFRCEVCGLEFSVSSNLQRHTKTHGNEKPYQCEFCDKAFLRSSDLQRHVRTHTGEKPYKCDVCGLTFGSLGNAQRHHRIHTGEKPYKCDICGKAFIQSGDLKRHLKTH-DEKLYNCTVCGEKFDRSTALKTHTC--SGPKPYSCENCTQTFNQPLDLQTHQ 2985
P EK + C E G F SS + H+GE ++C CGKGF+ + L IH R HTGEKP+KCE +CGK F SS++Q H R HT EKPY+CEECGK F S NL+ HQ +H G KP+KC+ C K F Q + + H+R+HTGEKP++C+VCG FS +S L H + H EKPY+CE C K F R++DL H R HTGEKPYKC CG F N Q H +HTGEK +KC+ CGK F QS L+ H + H EK Y C VCG+ F S+ LK H +G KPY CE C + F+ +L HQ
Sbjct: 292 PGEKLNRCHESGDCFNKSS-FHSYQSNHTGEKSYRCDSCGKGFSSSTGLIIHYRTHTGEKPYKCE--ECGKCFSQSSNFQCHQRVHTEEKPYKCEECGKGFGWSVNLRVHQRVHRGEKPYKCEECGKGFTQAAHFHIHQRVHTGEKPYKCDVCGKGFSHNSPLICHRRVHTGEKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQ 595 HSP 3 Score: 295.434 bits (755), Expect = 2.540e-85 Identity = 150/305 (49.18%), Postives = 197/305 (64.59%), Query Frame = -3
Query: 2074 EKKHHCQECGKGFYFSSHLKLHLRKHSGETPHKCTICGKGFTRANSLKIHIRRHTGEKPFKCEYEDCGKAFPTSSSYQRHVRTHTGEKPYECEECGKTFVASNNLQRHQWIHMGLKPFKCDICDKAFNQMSSLNSHRRIHTGEKPFRCEVCGLEFSVSSNLQRHTKTHGNEKPYQCEFCDKAFLRSSDLQRHVRTHTGEKPYKCDVCGLTFGSLGNAQRHHRIHTGEKPYKCDICGKAFIQSGDLKRHLKTH-DEKLYNCTVCGEKFDRSTALKTHTC--SGPKPYSCENCTQTFNQPLDLQTHQ 2979
EK + C+ CGKGF ++ L +H R H+GE P+KC CGKGF++A++L++H HTGEK FKCE CGK F SS Q H R HTGEKPY C+ CGK F S+NL+ HQ IH G KP+KC+ C K F+ S+L++H+R+H+GEKP++CE C FS + + + H + H EKPY+C C K F +SS LQ H R HTGEKPYKCDVCG F H R HTGEKPYKC+ CGK F +S +L+ H + H EK + C CG+ F + L+ H + K + CE C + F+Q L+ HQ
Sbjct: 461 EKPYKCEACGKGFTRNTDLHIHFRVHTGEKPYKCKECGKGFSQASNLQVHQNVHTGEKRFKCE--TCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQ 763 HSP 4 Score: 270.781 bits (691), Expect = 9.090e-77 Identity = 133/276 (48.19%), Postives = 179/276 (64.86%), Query Frame = -3
Query: 2155 EKKHHCQECGKGFYFSSHLKLHLRKHSGETPHKCTICGKGFTRANSLKIHIRRHTGEKPFKCEYEDCGKAFPTSSSYQRHVRTHTGEKPYECEECGKTFVASNNLQRHQWIHMGLKPFKCDICDKAFNQMSSLNSHRRIHTGEKPFRCEVCGLEFSVSSNLQRHTKTHGNEKPYQCEFCDKAFLRSSDLQRHVRTHTGEKPYKCDVCGLTFGSLGNAQRHHRIHTGEKPYKCDICGKAFIQSGDLKRHLKTH-DEKLYNCTVCGEKFDRSTALKTH 2979
EK+ C+ CGKGF SS L+ H R H+GE P++C +CGK F+ +++LK+H HTGEKP+KCE +CGK F S+ H R H+GEKPY+CE+C K+F + + + HQ +H G KP+KC +C K F+Q S L SH+R+HTGEKP++C+VCG F SS H + H EKPY+CE C K F RS +L+ H R HTGEKP+ C+ CG F N + H +HT EK +KC+ CGK F QS L+ H + H EK Y C +C + F + L H
Sbjct: 517 EKRFKCETCGKGFSQSSKLQTHQRVHTGEKPYRCDVCGKDFSYSSNLKLHQVIHTGEKPYKCE--ECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGVCGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYH 790 HSP 5 Score: 229.565 bits (584), Expect = 5.990e-63 Identity = 115/228 (50.44%), Postives = 145/228 (63.60%), Query Frame = -3
Query: 2296 EKKHHCQECGKGFYFSSHLKLHLRKHSGETPHKCTICGKGFTRANSLKIHIRRHTGEKPFKCEYEDCGKAFPTSSSYQRHVRTHTGEKPYECEECGKTFVASNNLQRHQWIHMGLKPFKCDICDKAFNQMSSLNSHRRIHTGEKPFRCEVCGLEFSVSSNLQRHTKTHGNEKPYQCEFCDKAFLRSSDLQRHVRTHTGEKPYKCDVCGLTFGSLGNAQRHHRIHTGEK 2979
EK + C+ECGKGF + S+L H R HSGE P+KC C K F++A ++H R HTGEKP+KC CGK F SS Q H R HTGEKPY+C+ CGK F S+ HQ H G KP+KC+ C K F + +L H+R+HTGEKP CE CG FS+ SNL+ H H EK ++CE C K F +S+ L+ H R HTGEKPYKCD+C F H ++HTG+K
Sbjct: 573 EKPYKCEECGKGFSWRSNLHAHQRVHSGEKPYKCEQCDKSFSQAIDFRVHQRVHTGEKPYKCGV--CGKGFSQSSGLQSHQRVHTGEKPYKCDVCGKGFRYSSQFIYHQRGHTGEKPYKCEECGKGFGRSLNLRHHQRVHTGEKPHICEECGKAFSLPSNLRVHLGVHTREKLFKCEECGKGFSQSARLEAHQRVHTGEKPYKCDICDKDFRHRSRLTYHQKVHTGKK 798 The following BLAST results are available for this feature:
BLAST of TCONS_00058442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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