|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058440 ID=TCONS_00058440|Name=TCONS_00058440|organism=Clytia hemisphaerica|type=transcript|length=538bp
GAATGATCATGGTATTCAACCAACCACCATAATCAGTGAAGCACAAGAAT
TACATGCGAACAATTTACTTCTTTTCATTCCCATTCTTTCCACTGAATGG
AGTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCTGGTGGAAGATG
GTGTAATATTATGCATGTTACAAAGGGACAGAATAGGGATGTTTACGGAG
ATCGGGTACCAGCCATTTTCTTTGATAAGttcAATATGATAATTTCAATA
CAATCAGCAGTGAATGGCATTATAAGTTATAATGTTTTCCATACGATCCA
ATATAACACAGAATACAATATGGAGATTCACCAGAGATACAAAAGTGGAG
GTGTTTACAAATATTCCATCCTTTTCGATGGGGAAGAAATCCACTCAACC
AATAATACACAAGCTCGACAATTTTATGGCATGGAAGTTTACATTTCCGA
TCCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGTCAAGATCACTA
ACTTTCtataatttcatattttgacAGACTGAAGCACA Run BLAST on NCBI protein sequence of TCONS_00058440-protein >TCONS_00058440-protein ID=TCONS_00058440-protein|Name=TCONS_00058440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
NDHGIQPTTIISEAQELHANNLLLFIPILSTEWSVQLQFKLLSEHAGGRW
CNIMHVTKGQNRDVYGDRVPAIFFDKFNMIISIQSAVNGIISYNVFHTIQ
YNTEYNMEIHQRYKSGGVYKYSILFDGEEIHSTNNTQARQFYGMEVYISD
PWYNACIGLVKNVKITNFL Run BLAST on NCBI transcript from alignment at scaffold_311:264243..270919+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058440 ID=TCONS_00058440|Name=TCONS_00058440|organism=Clytia hemisphaerica|type=transcript|length=6677bp|location=Sequence derived from alignment at scaffold_311:264243..270919+ (Clytia hemisphaerica)
GAATGATCATGGTATTCAACCAACCACCATAATCAGTGAAGGCATGTATT
CCTGTTATTTTAAATGtcaaaatctgaatttttcCGCTTTTAttcgggac
acactgtatactTTAGGAGTACAAACTTTTGCAAGCAgaaattttcgtga
tttttgcgaattttcaGGAAAGTAAATGTCATTTTAAACTCTTAACAAGG
ATATTCGCAAaggtttattttcatttttatcctacgattcacgaaagttt
aaaatgttttttcctcaaatttgcaaaagtaaaatgttgtagatttcaaa
attttacgatCGTGAAAGTTATTTCTGCTTGCGAGAGTTTGTGCGCCTAA
AATAAATGCGATCTCTAATAAATTTCCCATGGGATTCTTtgcaaactttt
tcattttccagggggtatccacgcattttcaagaatttttttttgatttg
aaaagttTCGTCTACTCTCCTAATATGAAAATTtcatggaatggcccaat
agaGGCCATAACAAGTGCCACATtctattatcaaaattttcctgAATAAC
CCCAGCAGCACACAACActgtttcgacgtttatctaatgttaacaacgtc
catataacgttagttgaacgtgttgaaacaacgttgtgtgccagctggga
acccTCCTCATTTACACtatattttcaatatatctTTCAGCACAAGAATT
ACATGCGAACAATTTACTTCTTTTCATTCCCATTCTTTCCACTGAATGGA
GTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCTGGTGGAAGATGG
TGTAATATTATGCATGTTACAAAGGGACAGAATAGGGATGTTTACGGAGA
TCGGGTACCAGCCATTTTCTTTGATAAGGTAAGCTTTTCTTTTAACATTT
TAGTATACTTAAAAACTTATACCTTAATATAAATGGAATTTGCACCCTCA
CTAAAATTAAGTTTCTTCAGGATTACCTTATTTTCTCTCAAGCGttaatt
tttagacaaaaaagaACCCATTGAACCTAATAAGTAGGTCAATGAGATTT
TAAGCTcgattttttgtaagaatttttctaaatcatgGTGCCATTTTCAA
CTTTCTCCCCATTTGCCCAactcgaaaaaaaagaagaagaaaccgGCAGC
ATCACGATGGAGCGCATGACGTCAGCTGCGCGGAAATTAACACGCTTGTA
ATTTGTTCATTATAGTAGGGCCGTGGGCGTTTTTTTTGACAGGCGCcttc
taattctccaatcgccGTCGGCCATTTtgaagtaaaacaaaaaattaaaa
aatagcaCGCTAAAAGCGAATTTTCATTTGTTATTGTCTCCTGGCCAAAC
TTAATGTTAGATTAAGTGGGGATCAATTCTGCTCGTCAAATTAGTTATCA
CTTTAATTAGGTACTTTCATAAGATATTCTCTATCCTTATTTACTCTTGA
CAGACTGTATTTTTCATATAACCGTATAAGCTCGAAACCAGATTTATGCC
GGCATTCTTATGCCGTCTttagggacaagctggagtttttacaagataga
GAAATGCTGAATTTTGCAGAACAGGATCAATTCATCCTTTGTTTCTACAA
TGTTTAAAATTACAAagttacagtcattgaaatacTGAATATAtcgaaat
tctatcaaaaaaaataCACCATACTCAAGTCCcaaagtcccgaattgaaa
tacatcaactttctgaaagAATTTTAAACTAACCCAAAGTCCCAAGGTCC
CAAAGTCCCGAAttgcaaaatatcgaaaatctattttaaaaaaatcacac
catacctatgtcccgaagtcccgaattaaAATGCAtgaactttctgaaaa
aaatattacaccaacccaaagtcccgaggtcccgaagtcccgaatagCAA
AATATCTAAAGtctgttaaaaaaaatcacatcaTACCTAAGTCTCGAAga
cccgaagtcccgaattgaaatatatcaactttctgaaaaaaatattacac
caacccaaagtcccgaggtcctgAAGTCCCGAATAGCAAAATATCGAAAG
tctgtttaaaaaaatcacaccatacctatgtcccgaagtcccgaattgaa
atgcATCAGCTTTCTGAATAaaatattacaccaacccaaagtcccgaata
gcaaaatatcgaaaatctatttacaaaaaatcacaccatacctatgtccc
gaagtcccgaattgaagtatatcaactttctgaaaaaaattttacaccaa
cccaaagtcccgaagtcccgaagtcccgaatagcaaaatatcgaaaatct
gtttaaaaaaatcacatcatacttaagtcccgaagtcccgaagtcccgaa
ttgaaatatatcgaaagtctatttaaaaaagattacatcatacctaagtc
ccgaggtcccgaagtcccgaggtcccgaagtcccgaggtcccgaagtccc
gaattgaaatacatcaactttctgaaaaaaaaattacaccaacccaaagt
cccgaggtcccgaagccCCGAatagcaaaatatcaaaaatctgtaaaaaa
aaatcacaccatacCTATGTCCCGAgctcccgaagtcccgaattgaaata
aatcaaattcaGAGAAAATAAATACTACACCAACttaaagtcccgaggtc
ccgaagtcccgaatagcaaaatatcgaaaatctgtaaaaaaaaatcacac
catacctatgtcccgaggtcccgaagtcccgaattgataTAAATCAAATT
CAGAGAAAATAAATACTACACCAACttaaagtcccgaggtcccgaagtcc
cgaattgaaatacatcaactttctgaaaaaaaaattacaccaacccaaag
tcccgaggtcccgaagtcccgaatagcaaaatatcgaaaatctgtaaaaa
aaaatcacaccatacctatgtcccgaggtcccgaagtcccgaattgataT
AAATCAAATTCAGAGAAAATAAATACTACACCAACttaaagtcccgaggt
cccgaagtcccgaatagcaaaatatcgaaaatctgtaaaaaaaaatcaca
ccatacctatgtcccgaggtcccgaagtcccgaattgataTAAATCAAAT
TCAGAGAAAATAAATACTACACCAACTTAAACAACCACACTaagcaaaat
ataatttttacagagtcaaaattctatcaaaaaaaaattacaccaaccta
aagtcccgaggtcccgaagtcccgaatttcaataaatcaaatttcagagg
aaaaaaattgcacaaacctaaagtcccgaagtcccgaattgaaatatgtc
aaaattctatcaaaaaaaattacatcaacctaaagtcccgaggtcccgaa
gtcccgaatttcaataaatcaaatttctgagagaaaaaaattacacaaac
ccaaagtcccgaagtcccgaagtcccgaattgaaatatatcaatTTTCTG
AGAGAGAAAGTTTCCACCCATGTCTCGTCTTAATTGATTTTTACCNATCA
AATTTCTGAGAGAGAAAGTTTCCACCCATGTCTCGTCTTAATTGATTTTT
ACCCCTACTCTTTTCATACTATCTCTGCCACCTCCCTTTACATCCATCTC
ACCCCTTTCTCACCCTCCCTTTGCATCTATCTCACCCCTGTCTTCATGTA
TATATCTGTCCCCTCTTTACGCGTCATCTCATCCTTATCTCGTGTTTCAT
CAATCATTTATTCAAGCCCCTCTTTTTGCTTGAGTTTCATCCCACCCGTT
TTCTTCTTTGTGTGAATATTTCACCCTTGCCTAATTCAACAATCCGATCT
CCTGTCTCACCATGTCTAATCTATCATTCTCTTTCTCCGGCCCTTTTTCA
ACTTTAGTTCCACCCCAACCGTTTTCCTTCTTTGTGTGAAAATTTTATCC
ATGTCCATTTCATTAatctcacccctgtctcactgtaTTCAATTTATCAT
TCATTGTCTCTGCCCCTCTTTCACCCCACCccttttgatagatttccaaT
CTTTCTTTATGTGAAATTCACTAAACCCTCCCCTCTTTCCACTCGAGTTT
CCCCCAACTTTATGTGGAAATTACACCCTTGTCTATTTCATCAATCACCC
CTGCCCAATCAAATTTAATCAATCAGTCATTTCCCCCGGTCCTCTTTCTA
CTTGAGTTTTCATATTTCCATCGGGACTTCAGGACCTTGGGATTTTTGAT
TGGGGTAACTTTTTTTCAGACTATACTTTGGTAAATTTCCATTCTGGACT
TCGGGACTTTaggttggtgtaattttttttctctgaatttgatttaatga
aattcgggacttcgggacctcgggactttaggtttgtgtaatttttttct
cagaaatttgatatatttcaattcggggcttcgggacctcgggactttct
tgttgatgtaatttttttcttcataagtTTGAtatttcgggacttcggga
cctcgggactttaggtgagtgtaaattttttttctgatagaATTTTGATA
TATTATAATTCGgaacttcgggacctcgggactttgggttagtgtaaaaa
aatttttctgatagaaatttgatatatttcCATTCGGttggtgaattttt
ttttttcagatagaATATCTCAACTTATTCTGTTTTTGCATTCTGTGAAA
TACACATCAAAAATCATGGCCGacgttgtaaaaactccagctcatccgcG
TCTTTAGCGCTTTAGATAGCACGATTAAAAGAGCGAAAAACgtttaaatt
ttaaacaaagtgaacaaaataatttgaaaatgtgatttttttggTGCTTA
CTCTCAGGTTCCAAATAAATGCCCCTCCCCCGCTTgttaatcttttgaaa
atttgccaaCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaaa
aaatttccaaccccccccccctgtttatttgaACCAccttgtttatttgg
aacctaagagtaagtgcCATCAgtcatttctaaaaaaaattaagaaaatt
cgCTCCTTCAAGCTTTAAAGGCTTAAGACTGCGCAGACTTGACTGAAcga
tggaaaggtgcccagtggtaaaacttccaTTCAATTCccaaaaaacagcc
aaaatttcaaaaaaatggatatttgtcaaatttttgcatttttttgactt
tttggcatAATACCTCGCTAAAAAGACTCAGTTTTGAATTTCTTGACTAT
GAAGCACAATCCAATTTCTACgacttagataaaaaattacGATTTCTAAT
TCAAACTGGGTATTACAGGAgagcttcgccctcctatatagcccatgtga
AATACACTTGACATGtacacggaaagggttaaatttcaaacaaaatattg
ttcttttttcaatttcagttcAATATGATAATTTCAATACAATCAGCAGT
GAATGGCATTATAAGTTATAATGTTTTCCATACGATCCAATATAACACAG
AATACAATATGGAGATTCACCAGAGATACAAAAGTGGAGGTGTTTACAAA
TATTCCATCCTTTTCGATGGGGAAGAAATCCACTCAACCAATAATACACA
AGCTCGACAATTTTATGGCATGGAAGTTTACATTTCCGATCCTTGGTATA
ACGCATGCATTGGTTTGGTTAAAAATGTCAAGATCACTAACTTTCtataa
tttcatattttgacAGACTGAAGCACA Coding sequence (CDS) from alignment at scaffold_311:264243..270919+ >TCONS_00058440 ID=TCONS_00058440|Name=TCONS_00058440|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_311:264243..270919+ (Clytia hemisphaerica)
AATGATCATGGTATTCAACCAACCACCATAATCAGTGAAGCACAAGAATT
ACATGCGAACAATTTACTTCTTTTCATTCCCATTCTTTCCACTGAATGGA
GTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCTGGTGGAAGATGG
TGTAATATTATGCATGTTACAAAGGGACAGAATAGGGATGTTTACGGAGA
TCGGGTACCAGCCATTTTCTTTGATAAGttcAATATGATAATTTCAATAC
AATCAGCAGTGAATGGCATTATAAGTTATAATGTTTTCCATACGATCCAA
TATAACACAGAATACAATATGGAGATTCACCAGAGATACAAAAGTGGAGG
TGTTTACAAATATTCCATCCTTTTCGATGGGGAAGAAATCCACTCAACCA
ATAATACACAAGCTCGACAATTTTATGGCATGGAAGTTTACATTTCCGAT
CCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGTCAAGATCACTAA
CTTTCtataaAATGATCATGGTATTCAACCAACCACCATAATCAGTGAAG
CACAAGAATTACATGCGAACAATTTACTTCTTTTCATTCCCATTCTTTCC
ACTGAATGGAGTGTACAATTACAGTTCAAACTTCTTTCCGAGCATGCTGG
TGGAAGATGGTGTAATATTATGCATGTTACAAAGGGACAGAATAGGGATG
TTTACGGAGATCGGGTACCAGCCATTTTCTTTGATAAGttcAATATGATA
ATTTCAATACAATCAGCAGTGAATGGCATTATAAGTTATAATGTTTTCCA
TACGATCCAATATAACACAGAATACAATATGGAGATTCACCAGAGATACA
AAAGTGGAGGTGTTTACAAATATTCCATCCTTTTCGATGGGGAAGAAATC
CACTCAACCAATAATACACAAGCTCGACAATTTTATGGCATGGAAGTTTA
CATTTCCGATCCTTGGTATAACGCATGCATTGGTTTGGTTAAAAATGTCA
AGATCACTAACTTTCtataaAATGATCATGGTATTCAACCAACCACCATA
ATCAGTGAAGCACAAGAATTACATGCGAACAATTTACTTCTTTTCATTCC
CATTCTTTCCACTGAATGGAGTGTACAATTACAGTTCAAACTTCTTTCCG
AGCATGCTGGTGGAAGATGGTGTAATATTATGCATGTTACAAAGGGACAG
AATAGGGATGTTTACGGAGATCGGGTACCAGCCATTTTCTTTGATAAGtt
cAATATGATAATTTCAATACAATCAGCAGTGAATGGCATTATAAGTTATA
ATGTTTTCCATACGATCCAATATAACACAGAATACAATATGGAGATTCAC
CAGAGATACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTTTCGATGG
GGAAGAAATCCACTCAACCAATAATACACAAGCTCGACAATTTTATGGCA
TGGAAGTTTACATTTCCGATCCTTGGTATAACGCATGCATTGGTTTGGTT
AAAAATGTCAAGATCACTAACTTTCtataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058440-exon-scaffold_311-1491911889:264243..264283 | TCONS_00058440-exon-scaffold_311-1491911889:264243..264283 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1510915933:264243..264283 | TCONS_00058440-exon-scaffold_311-1510915933:264243..264283 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1575043694:264243..264283 | TCONS_00058440-exon-scaffold_311-1575043694:264243..264283 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1491911889:264933..265120 | TCONS_00058440-exon-scaffold_311-1491911889:264933..265120 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1510915933:264933..265120 | TCONS_00058440-exon-scaffold_311-1510915933:264933..265120 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1575043694:264933..265120 | TCONS_00058440-exon-scaffold_311-1575043694:264933..265120 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1491911889:270611..270919 | TCONS_00058440-exon-scaffold_311-1491911889:270611..270919 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1510915933:270611..270919 | TCONS_00058440-exon-scaffold_311-1510915933:270611..270919 | Clytia hemisphaerica | exon |
| TCONS_00058440-exon-scaffold_311-1575043694:270611..270919 | TCONS_00058440-exon-scaffold_311-1575043694:270611..270919 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:264243..270919 + |
Blast
The following BLAST results are available for this feature:
|
