TCONS_00058436 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058436
Unique Name	TCONS_00058436
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1276

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_311:243185..253170+

transcript sequence

>TCONS_00058436 ID=TCONS_00058436|Name=TCONS_00058436|organism=Clytia hemisphaerica|type=transcript|length=1276bp
aaacatgaagaaaattttacttcttCTTTTGATGCATTTTGCTCTTTTTG
AAGCAGCGAAAATCGAAGAATCGAACACAACAGTTGGGGATACTGTTTAT
CATGTCAAGAAAGTTGCGTTCAGAAGATATGACAATGTGATGCCGACTTC
TGATGCCAACACACACCAAAGTATTAGAGAAATCACCAATGCCACTTCAC
AggTTTGTGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGCTTTTTG
CTTTTTCGCCACAAAACACCACCGACTTGCACTCTTATTGATGGACCAAT
CGATCGAAGATATATGATCAAAAATTCAACCGTCGACTATTATGAAGTCT
GGCGACATCAGCAGCGACGTCGGAACCTGCAACTACGACGCCGAAACCTG
TAACTACGACATCGACGTTCGTTTTAACAACACCTGCAGAGCCTTTAGGG
GCTTTTGCGCGAGAAAATTCAATTCCAGCCTTCACCTATGCCAACATACC
AGATGATTGGCAGTTATCAATTGGGCTGGAGATTAAAGGTCAAACTATGG
TAAACAGTGGTGAACCCATAAGTATCATCCACCTGGTGTACGGTGACAAC
CCGTCCAATAAAcatgttttatttactttggttTATAACAAACATTTTGA
GCTTCACTACAATGGAAATGAGCACCCGATCCAAAGCCAAGGACCACCTC
TGTTTCCTTCAGGACCTTTTGAACCATCCCGATCTTACACTTacaatgtg
atttttgaattcacTAAGTCGTTAAACAAACTCAGTTGCACTATCAAATT
CACTAACGGTCCGTTGAGCACATTCACCGTTGCGTCTGCTAAAGATCTTG
ATATCAGTCCAGTTTATGACCTTACAAATGTTGAACTCTATGTTGGTTAC
CCTGATCACAGCAAATATACTGGAGAGTACAATGTCCATGATGTTGTGGT
GACAACAGTTGGAATATCCAACTTGGTTTAAAGTTCCTtctaaacacccc
cttctcacaaacccatcaggaacccttcccactggaaaaactttcccaaa
aattgttcccggtggaaaattatcctccaattttcgtccccattgaattt
tctgacttgaaaacaaaagaattgaaatccccaggcATAAAAGACATTGG
AATACCAATTCccatcgggtctgtgagaagggggtgtttctAATATGAAC
CATACAGTGATTTCATAAAAAAGCGAACAATTCTTTAAGTATTTAAACCC
CCTTTAAAGTAAAATCCTTATAATTC

Run BLAST on NCBI

transcript from alignment at scaffold_311:243185..253170+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058436 ID=TCONS_00058436|Name=TCONS_00058436|organism=Clytia hemisphaerica|type=transcript|length=9986bp|location=Sequence derived from alignment at scaffold_311:243185..253170+ (Clytia hemisphaerica)
aaacatgaagaaaattttacttcttCTTTTGATGCATTTTGCTCTTTTTG
AAGCAGCGAAAATCGAAGAATCGAACACAACAGTTGGGGATACTGTTTAT
CATGTCAAGAAAGTTGCGTTCAGAAGATATGACAATGTGATGCCGACTTC
TGATGCCAACACACACCAAAGTATTAGAGAAATCACCAATGCCACTTCAC
AGTAAGTACCACATGCGACCGTAGGCAAGGTtttgggttcgatccccagc
cgagtcataccaaagattgccaaaatggtacttgatcctctctgcttgat
gctcagtaacTAAAAaaacggatcaagggtaagtggagaaatccagggaa
aggagtgacGCCCTCCCCTACTTTCGGGTAGACagcttacttacttactt
tacttaAGCACCATATACTGCGTCCAGAAACATGGGGAATGTGCCTTTAT
CCGCCTCTTATGTCATcccttagaccatgttcagacgttactgTTTGGTT
TCGCTTCGGTGTatttttcgttacggatcgagagtgttcggttttggaac
gtttcggagcaagaaaacagaGCCGTTCCGTTCCAATGTAAAAAGCGGAG
TGAAACCGTTTCGATTTGTTTTGCTTTCTAacctcttcttttttgacgtt
tcgaattttgacgttcacacttgtttcggaaccgtttccattcagagcga
aacggaactgtaacgtctgaacatggtcttattgtttttatgttttggcC
TGTCACATAATTAAGATATATCATAGACATCTTACATAAAAcactaccca
gctggcacacaacgtttttttgacgtttatctaacgttcacaacatccat
ataatgctagatgaacgttgaaacaacgtcgtgtgccagctgggtagacA
GAGCTACTCTATAGATACCTTGGTTTTCactgttgaaacttttttgatac
aCCAACAAtggtgtttcaaaaaaaaacatttgtttttatttcagggTTTG
TGGTACTGAATGTTATCGTGCAACGTCTTGCTGGAGCTTTTTGCTTTTTC
GCCACAAAACACCACCGACTTGCACTCTTATTGATGGACCAATCGATCGA
AGATATATGATCAAAAATTCAACCGTCGACTATTATGAAGTCTGGGTAAG
TTACcctatcggggaaaaaaattttggagttttatttagtcaggGTTTTT
TTTTCGCCGGAGAAAAATTTCGTTACCTacaggcattttcgtcacttttc
cccgacgaaatttacaatttggtCACTCTCAtccaactaaattgtccaaa
tgaaatggtttcctgcACTAGCTTCGAAAATAGATTTTGTAATTTGACgt
ttaataaaggtgtaaaacaTTTAGattttaaagtctgttcacgataagtg
tgcactcttttttcttttaactataacttttgaaggaattcttcaatttt
tataaatttggtatcattggaaagatattagtgagtggatcaatttgaaa
taaacaagtctttaaacaaattctaaaaacgaagatgaaagTGAAGAAGA
AAAAAATGAAGATCTTGTAGAGAAGTGCTATAactttcattttcactgga
gagattctttgatcttaggagatcatcactgtgaaaaaatttcactaaaa
tatttattcaatataaagttatgatacaaactaataagtgattgacccca
aaaacagcagaaaacagcagaaaacagcagaaaacagcgtttttagacgt
caaatCAGATTATaactttgcttgatatcttttgattgaatgattatttt
ttagaaattttttcacatgatgacgttcgataatgaaggattcacttcag
tgaaaatgatagttatagcacctttctataagatcttcatttttttcttc
ttcattttcattttcatttttagaatttgtttaaagatttttttatttca
aattgatccACTTACTAatttctttccaatgataccaaatttataaagat
tgaagaattgcttcaaaagttataggtaaatgaaaaaagagtgcacactt
atcgtgaatagactttaattttggttggggtttaaaaaattgggtaacag
ttttggtcggggataaaaaaatcgggtaaaattttcgtcgggtgataaaa
tattggggagaaaattcgtcggggaaaattttcgtcgcgccctcaaaatt
ttcgtcactttccccgacatctttttccctgataaggtaaAAAGAACTGC
ACAAcaggcgaaaaaaaaaaatagtgttTCTGGAAAGTGGGTGAAGGCTA
AAAGCTCTCATACGACCAgctgaaataaaacttttttgtgcTATTTTTGT
TAACTtaaaatcattgaaatagaactttaaagataacttttatgtacaaa
aagTATCAAGTAAGCCTGAATACTAATACGTATCAATTACACACggacaa
aacttgatttacaggCGGGAATATTTAACCAagcgacgtttgatagcttg
aactttttttcacccggccggtttccggaaacactacattttttttaatt
ttcgcctcatattcataacttttgaaaatatttatgtgTATTATGAAATC
TGAACAGTGTGACTAGATTATGGAcgaatttattttcattagagATGACc
accagatgacgtcatcaaattttgacatttccAAAATGGGAACCCCTCTA
ATTAtcttttaacttatttttttttcggcaaagtAGCTTTCAACCAAACG
TAtttttaatcgaaccaatcgaactttgtcgaacttaatcgaacttggTT
GTCCAATTGATGTTCGACTAAGTTCggttgtcgaactttaatcgaataGT
CATTCTTATAAATACAAATTCTCCAAAGtataaagttcgattaaagaaat
taaaggaatcgaacttaatcgaacttaataAAACTTGATCGAGTTTAATA
AAACAATAATTTGAGAAAATCCTTCGAACTTTTCTTATTGTCAAACTTTG
TCGAACgtagttttttgtcgaatttgtcaaacatttcttgctgttgaact
ttgtcgaacttaatatgtatgttttgtcgaacttaattgaATACTCACAC
AATTTTAGGgacttttgaaaagttcgattaaataaTTTAAGATATAGATT
AAGTTTGACAAAGctcgattagttcggtaatcgaactgttcgattaatta
cgtctggtttCAAGAATTGAACGAGCCAATCACTTAATACGTGTTGATAG
CCAAATTTGTATTCTGTTCTGTAAAATATTAACCAAACAGAATGAAAGTA
CCAATTATGTAAATCTACTACTGGTTAAAATTTCAAtagcatacatgttt
tttttataagaatatccaaaatttttgaagtcttcggatgttgttaactt
tttcggtttcgagcctaaaaatgttcctattttaaccaatttttgaccat
ttttacccattttcctaagaagttgaatgtttttgagtccattaagcctt
aaaatgttcttaacttgttcttattaacattttggccgtcgaagccttat
gttgttatatagtttgttcttataaaaaaaacgtgtaacacattttgaaa
ttttaagaggAACTCGAGGCTGCCCAAAAAGCTTTCCTTAGTAAGATATA
CGTCCAGATGTAGAATTCAAAAACTTAAGTatctattttacagaccggtt
tGTAGACTACCAGAAAAAACAATTCTTTCAGCATATATTTCATCTTTTAC
AGAATCAATGTTCTTCAAACAATACCATCTGTAATCTGGGTATCTGTTTA
CCAAATTATGTGACAGATTCTTACACTTGTCATTGCCCATCCAGATACAC
TGGTGCAAATTGTGAAACCCAAATCATTACATGTGAGTTACTCAATACAC
AGGCTGCAAAGTATCCCAactggcacacgacgttgtttcaacgtccatct
aacgttatatggatgttgtgaacgttatataaacgtcaaaagacgttgtg
tgccagctgggatgaaGTCGTCACGCTTTTACTGGacatttttatgtgct
tgttatatgacatttatttctgattagTTCAAATATATAATATTATATTT
ATAAACACAggtaaagttatcagctgtaagttgtaaagcaagtaataaca
tgggaataaaatcacgagaactttttcgagtaatcacatgtttttactgc
attgatataatttcgCAACCATGTATTACATTTTTGCAAACTGTATCATG
GCGTTACTGAAAATACTACTTTAGTGAGATTAATTTTtacggggattaaa
tttcgcggttgagctcattcatgaaattttaagataatgcggggctctga
ccatagtgaatttttaatatttgccacctacaaaatatgaatttctgcct
gatgtagcggaaaaaactttgacatgttatacattttctgttaggccaac
tatccgtgagtctaaaaatttaaaaatcacaatgctaaaatttgatgaaa
aagaaaatgaagacttttgcgaagaagagtatttcaactttgaggagctt
agtttcggtgaagaaaaatacatttaaaaagatttttgcggtagatggtg
tcttttttatcgaactaaaattaatttttcgggaaatctttctaaaagct
tatttgcttcaaaatcttgaaaatagtaattttcaccaattttccatccc
aaattttcatagaaaaacaaccataacatttgatgcattaatttagaaaa
attttccggaaattttaaaacagtttaattttttgctagcctggatatcc
aagctcaaaatttaagaaaaaacaaaatttacctcaacatacaaagttct
taaattatagagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ACGAGAATGCaaaacgctctagggagaccaggctgtaaatcagaacataa
aatatctaaaactagactgtgaaataatttacagcctggatatccaggct
aatttTTTGCAGACAGTtcgaaaaaacttcgaaacaaaaaggttgaccca
ttaaaacttagcactttgtataaaagaaggtgatgcaacgtctttttaaa
gttcataacgtcatttttgcaattaagttcttaattactcttaagggggg
atttgattaaaaaacaatttataaaggcaattcttatttgttaaagggac
ataaaagtgttaaagaatctaaaaaataaGAGCCCTTGAATCCGCGGATG
ACTCTATTGTGACATTGTATTTTCACGACTTTGTGCTATTTTTGCTATTC
TATTGCCAAACTATGCCATGTTGAAATATGCATTATCAGCGCTTCTTTGA
TGGGCGGTAAACATGTTAAAAGtagtcttttgaaattttttggaacTTAA
TTCAAAAAAGCTTTTGTAGTCAAGGTCCGTGAAATCCGTGAAATCCTCGA
AATTTAATCCTTGCGAAAACTAGTGCAGTTATTATGACAACACTAttcca
gctggcacataacgttgtttcaacgtttatttaacgttcacaacgtccat
ataacgttagatgaacgttgaaacaacgttgtgtgccagctgggatgacA
CTACCGTGCTGATATATATTAACCAAAATTCGGGAAAATAGTTACTTCAT
CAGTGGACTACTCTTagaggtgccaaataaacgggccccctgcttgttaa
tttttcgaaaattttctgaCCCACCCGAACCTTCTTAggacccccctgtt
tattaattattaagaatatttttagttaACAAGAAGAAGTCGCCTTATTT
GGCTCCAAAAAGTCTGATTTCaacctatatttaccttattttttggtttt
cagaagtacaacaTCCAACCCTCCCCCGACAATTAGGTCcctccgtttat
taaaatttcgaaaatgttCCAACCCCCTCCCCGTTTAAtcgaccccccgt
ttattcgggATCTAAGATTACATGCAATATGAGTGGTGCTCTTACATGAA
ATTAACTGTTCAAATTTTGTCTTGATGAAGCGGCtactttttcatgtttt
atcaTTATTATGGGCTATTTCTCTTCAAGCGACATCAGCAGCGACGTCGG
AACCTGCAACTACGACGCCGAAACCTGTAACTACGACATCGACGTTCGTT
TTAACAACACCTGCAGAGCCTTTAGGTATAAATGCTTAatatttctttct
atttttgtgGATATATCAAATCGGTTACAAGGTTTTGAGCAgtaaaaatt
tatgaaatattAAACGTTGTCCATTTTGGGAGGCTTAAGAAAGATGCAAA
AGTTTGTACAGTAAAACATCCAATTAACAGAGACTCTAAAAAGCGGACGC
CTCTGATTAGTGGACCAATTCAATTTTCCCCAACCATTTTCTAGTGGaat
cctcataaaaaatgtCCCTCCAATGCTCCAATTAGCAGACCCTCCAACTA
GTGGACGCAGACCTTAAAAAATAGACAAGATTGATTTGTCCAAACTATTT
ATTTCTTAAACACTTCAAAGTGTCATTGAGAAAATTGCTTATAGACGTTT
GGAGCGCTCCCTTCATTCAGTCGGTGAATTTTACAGGGACCTCAAGACTA
CTATGATTCATGAAATAAAGATTTTAGCATTTAAATAATCATTCTCTTGT
TCTTTCATACCCCTTTTGTATAATAGTGCCTTCTTTACCAAAATTAGAGC
ACATAATTGAAAAGTTTCCAAATGGCGGACACTTCTACTTAGCAGACATG
ATTCCGTTTTCCCGATgatgcccagctggcacacgacgttgtttaaacgt
taatataacgttatatggacgtagtgaacgttagatagacgttgaaacaa
cgttgtgtgccagctggtgtCCAATAATTGGAGGTTCCACTGTAAATAAG
AACGAGTCGAGATTCGATACCTATAAAATGACATTATTTTTGATTACCAA
AATCCAAAAGCTACCTAAAATTGAGACCCTCATTTAATAGTAAAATTTCA
ATAGAATCTAAATAATGctaaaattttattagaacTACTCTTAGCTTCCA
AATAAACATCCCCCTgcttcataatttttcaaaaattttctagccccccc
ccggaccttattaagCCCCCAtgtttattagtttttaagaaTATAAGAAT
ACAAAGCTTGATTTTAGCCTACTATATACTCCCCAGGCAAATAGGTCCAC
TCCctcgtttattaaaatttttattaattaccagctccccccgtttattt
ggaacctaagagtaaacaCTGCAAAAAAAGACTTCAGACATGTACTGcta
tagcctgggaatccaagcgttaaactttgttcacagtctagtttatgata
ttttcgcTGCTTCTATattcttagaactttgtgaggtgaggtatttatgt
ttttttccaagattataagcttggattcccaggctagtacAGCTATTATT
ATATAGATAACTGCCTCATAAATTTCCATCAACACGACACTTTAAATAGG
ATTTATGTATTTCATAGGGACTTTTGCGCGAGAAAATTCAAATCCAGCCT
TCACATATGCCAAGATACCAGATGATTGGCAGTTATCAATTGGGGTGGAG
ATTGAAGGTCAAATTATGGAAAACAGTGGTGAACCCATAAGTCTCATCCA
CTTGGTGTACGGTGACAACCCGTCCAATAAAcatgttttatttactttgg
ttTATAACAAACATTTAGAGGTAATAGCGCATCACAGTGTGAAAATGAAG
TCCATGCCAaatgttttatttgtttatacTGAGGTCTACGCCTCAAATAA
GTTTTAGGGGGGGACCGAATAAATTGGACGGGGTTTTGGGGGAGGCTGTA
AGCCCCCTCCCAAACGTGTCCAGGGAAAGCCCTGGAATATTTGATCTTCT
CCCGCCTCAAAGATNccctccatttgcctaagtcccccccccccgctata
ttcttagaactttgtgaggtgaggtatttatGTTTTTTCCAAGATTAtaa
gcttggattcccaggctagtacggctattattATATAGATAACTGCCTCA
TAAATTTCCATCAACACGACACTTTAAATAGAATTTATGTATTCCATAGG
GGCTTTTGCGCGAGAAAATTCAATTCCAGCCTTCACCTATGCCAACATAC
CAGATGATTGGCAGTTATCAATTGGGCTGGAGATTAAAGGTCAAACTATG
GTAAACAGTGGTGAACCCATAAGTATCATCCACCTGGTGTACGGTGACAA
CCCGTCCAATAAAcatgttttatttactttggttTATAACAAACATTTTG
AGGTAATAGCGCATCACAGTGTGAAAATGAAGCCCATGCCGAATTGTTAT
TTGTTTATACTGAGGTCTacaccaaaaaaagtttcaattgtGGAATttta
cgggggggggggggtttcccccccccccaaaaatcccccaatacaaattt
ttttttttttatactgAGGTCTAccccaaaaaaagtttcaattgtggaat
tttccgggggggggggggggaaaaaaaagtgGAGGGGTTTTGGGGGGGGC
TGTAAGCCCCCCTCCCAAACGTGTCCAGGGAAAGCCCTGGAATATTTGAT
CTTCTCCCGCCTCAAAGATGCCCAAAATTTGCTATATTTTCTAgttttaa
gatgaaaaaaaaacttttactctAATTTAATATATAAccaattttcaacc
tttttcttCAGCTTCACTACAATGGAAATGAGCACCCGATCCAAAGCCAA
GGACCACCTCTGTTTCCTTCAGGACCTTTTGAACCATCCCGATCTTACAC
TTacaatgtgatttttgaattcacTAAGTCGTTAAACAAACTCAGTTGCA
CTATCAAATTCACTAACGGTCCGTTGAGCACATTCACCGTTGCGTCTGCT
AAAGATCTTGATATCAGTCCAGTTTATGACCTTACAAATGTTGAACTCTA
TGTTGGTTACCCTGATCACAGCAAATATACTGGAGAGTACAATGTCCATG
ATGTTGTGGTGACAACAGTTGGAATATCCAACTTGGTTTAAAGTTCCTtc
taaacacccccttctcacaaacccatcaggaacccttcccactggaaaaa
ctttcccaaaaattgttcccggtggaaaattatcctccaattttcgtccc
cattgaattttctgacttgaaaacaaaagaattgaaatccccaggcATAA
AAGACATTGGAATACCAATTCccatcgggtctgtgagaagggggtgtttc
tAATATGAACCATACAGTGATTTCATAAAAAAGCGAACAATTCTTTAAGT
ATTTAAACCCCCTTTAAAGTAAAATCCTTATAATTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036822	XLOC_036822	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:243185..253170 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.192977	0	0	0	0.616412	0	0.617147	0.859021	0.352114	0.252264	0	0	0.0960474	0.0980954	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00058436 vs. Swiss-Prot (Human)

BLAST of TCONS_00058436 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00058436 (transcript) - C. hemisphaerica