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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058430 ID=TCONS_00058430|Name=TCONS_00058430|organism=Clytia hemisphaerica|type=transcript|length=1925bp
GAAGTTTCGCTGAAAGAAGCAAAAATACTACCCAGCCTTTTAGtaaatat
tcaaaattaaaataaattaaagtcAACATGTCAGGACAAGATCAAAGAGA
TGGCCAAACTCCATACGTCAAAGCAGATAATGGTAGTACTATTCATGGTG
GTGTCAATATTACTAATGGACCAGCCACCATCATTGGTGGAAATCAAATC
ATCAATAACATTCCTGCTGGAGGACAGCCTCCACCATACATTGATACTGA
GAATGTGATGGCGAATAGAAGAAATTTGCCACCTGTTCAAGGAGAAAGGA
AAGCACCAAATGATCAAAGACCTTTCCAAAGAGAACCATCTCAAAGTGAT
GATCGATCAAATCCACAGACTCAATACGACATTGAAATGAAGGATCTGGT
GAACATGGTTGCACAACGTTACCAAGAACCACCAGATTTCTTGTACAACA
TGGGAAACAATGGCCGTGTGGTTATCATCAATAATGTGCATTTTGACCAT
TTCAAAGAAAGAATTGGTTCTGATCAAGATGTTAAATTATTACAAGATTT
CTTCCTATACACCATCCGTTGGAATGATAATTTAGAAATATATCGAGACT
TAACTGTTGCTAAGATGAAAGATAAACTCACCAATTTGAGTCGGTACGAT
TTCACACGAAACGGtgctttttttcttattatctTAAGCCATGGAAATGA
GTATGGAATATGTGGACGTGATAGTCGTCAAAAAGATCATCGAAATGTGT
TAAAAATTGAGGAAGATGTTCTCCCACTATTCACCAGTACAAAATGTCCT
TCTCTTGTTGAAAAACCTAAAGTCTTTATTATGCAAGCGTGCCGTGGAGA
CGTTGATGATTTGGGTTACTGTATTGAAGATACGGACGCCGACTGTGCTG
CACCACCGACGAATTTCAAACGCCATGTTCCAGACACGAGTGAGTTTCTC
CTTTGTTATCCATGCAGTCCTGGATACACTTCAGTCAGGAATCAAGCTTT
CGGCTCAGTGTTTATTAATTCTCTGGTACAAATTTTCAAAGAGCAATACA
AACGAGAAGATATTTTACGAATGTTGCTCCGAGTTAACCATAAGATTGCA
AAGGACACTAATTCGTTACGTATTAAACAGATGCCCTGTCATGATAACCG
TTTAACTCGGTTGACtttctttgaagactttttcttggagaaaaagaaac
ttttgatTGAAAGTGGTGCATTATCATCTTAAAACACCTGCCAATGATCT
ATTTCAGCTTACTGGTGCACAGTACTGGACCTAGACGAGGTATTGAATTT
AGTGTTCTGTTCAGTAAACACGTGTTTAATACCATAAATACTCATGCGTa
catttttttggacctacctggaggtcctataaattaacctttgtccgtcc
gcccgtccgtctgttaccagttattgttttcattttaatttttatttaac
tttaatCATCCGGTAGGTcgattcagcatctagcttgtttacaaaagaag
ttttttaaagtttttaaaagttttatctATATCCCagcaggcacacaacg
ttgtttcaacgtctatctaacgttcactacgtccatataacgttatatta
acgtttaaacaacgttgtgtgccagctgggatcatGATGGATTGGGCGTC
ACGGatgttttttattaaattttggccgaaacttttgattgaaaatggGT
GCATTATCATCTCAAAACACCTTTCAATAACTTAGCCTTGCTTGCATAca
tacagtgccgtaggaacAATATGGGGTTCTGAATTCaattttctgttttg
aaaaCGAGCGCTTAATGCTATAAAACTGGTTCTGTTCATGTTTTACAAAA
GAGATcaatactttaaatttttatctttttaccATGATGGCTTGGGTGCC
ACTGGTAACTTCTATTAAATGTCGG Run BLAST on NCBI protein sequence of TCONS_00058430-protein >TCONS_00058430-protein ID=TCONS_00058430-protein|Name=TCONS_00058430-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MSGQDQRDGQTPYVKADNGSTIHGGVNITNGPATIIGGNQIINNIPAGGQ
PPPYIDTENVMANRRNLPPVQGERKAPNDQRPFQREPSQSDDRSNPQTQY
DIEMKDLVNMVAQRYQEPPDFLYNMGNNGRVVIINNVHFDHFKERIGSDQ
DVKLLQDFFLYTIRWNDNLEIYRDLTVAKMKDKLTNLSRYDFTRNGAFFL
IILSHGNEYGICGRDSRQKDHRNVLKIEEDVLPLFTSTKCPSLVEKPKVF
IMQACRGDVDDLGYCIEDTDADCAAPPTNFKRHVPDTSEFLLCYPCSPGY
TSVRNQAFGSVFINSLVQIFKEQYKREDILRMLLRVNHKIAKDTNSLRIK
QMPCHDNRLTRLTFFEDFFLEKKKLLIESGALSS Run BLAST on NCBI transcript from alignment at scaffold_311:210536..217490+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058430 ID=TCONS_00058430|Name=TCONS_00058430|organism=Clytia hemisphaerica|type=transcript|length=6955bp|location=Sequence derived from alignment at scaffold_311:210536..217490+ (Clytia hemisphaerica)
GAAGTTTCGCTGAAAGAAGCAAAAATACTACCCAGCCTTTTAGGTATTTA
TTTCTAGGACTTTCCATCAacttttaccatttttttaagCTTGGAACTGC
TATAGGTCATCATAGGATAGGTTGGTGTTGATTATTGgttgaaagtcaga
aaatatGAACAATTTCTGGCAGTAGGTTTTTTTGTCTCTTACAATCCATA
gctaattttttccaatttccaaCCTTTATATAAAGATTCAACAGAAGCAG
CCTGAAATGTGACCtttgtttgaatgaaaaatttgaaatatctttgCGTA
AAGACAATTTACTGAACTCTAGATCTGAACTTATCTCAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagaaactttaagtattg
aaaagaaatacaacgtttcttaatctttatgtatCAAGCTCTACTTATGT
ATTGAGCACTCTTAATTGTGCAGAGAAACACAAGAAGATTCAAGATTACA
TATGTGCGGGCGTTTGCGGGCGAAATTTTGACTTAGAATGGTTCGGCCCG
CACACGCCCGCAAATGTGCGGGAATGTGCGTGCGTTACCAAGGGTCGTGT
TTTTATTCATTGTATATAGTGTTTTAAAAGCGAAAGAAAGCAAACTCTAA
ACTCTAAAAATTCGATGACCCATTGGTGGATTGGATATCAATTGATTCTG
Gtaatcaatgacgtcatcaaaactaaaaattgaatttctcaaggatagtt
ttttcaattgtcttcaaactttcaccaaaaagATGTATCCTACTAAAGTC
GAAATTCTGataacgtcagcaaaaaaaaatgatttttcgttttttactaa
tttctgctgacatcatcaaaatttggaaacatttttttttaatgatcgac
tttagtgagatgcatctttggtgaacgtttgaagacaattggataaacca
ttattgagaaattcaaattttagttttcATTATGTCATCGATTATAATGT
CATAAATCAGTAATACCCTGGCACTGTCTAGTTTTCAAAtgcgtaagatt
acgtaattcaaaggcaaaacgtcagatttcatttgttcctggGTTTGAAA
CCATCGATTGCAGTGTAACgttgtaacgtcagatttttttaatgacgtat
tgttttgagaagttccccctctcagagagggaactcgcatcagccaacac
catggtattctctggcgtcaatcagtaacgtaaataaagcctggaataca
cagGGGCGAGGTTGGAGAAACAGTTCTAGAAGtttgaatttgaaagaaaa
tatgtcTAGTGTAGTAATTTATTTTGTAGATGTTGTTTTTGTATTATCAC
TCTTGCTATAGTAAAAAAACTTAAGTCTTAGTCCAGGATGCTAAAAGTGA
CGTAGAATTAACTCTTTAAGTTTAAGTTAAAATTAGCGCTCTTTTTCTTc
agtaaatattcaaaattaaaataaattaaagtcAACATGTCAGGACAAGA
TCAAAGAGATGGCCAAACTCCATACGTCAAAGCAGATAATGGTAGTACTA
TTCATGGTGGTGTCAATATTACTAATGGACCAGCCACCATCATTGGTGGA
AATCAAATCATCAATAACATTCCTGCTGGAGGACAGCCTCCACCATACAT
TGATACTGAGAATGTGATGGCGAATAGAAGAAATTTGCCACCTGTTCAAG
GAGAAAGGAAAGCACCAAATGATCAAAGACCTTTCCAAAGAGAACCATCT
CAAAGTGGTATGATCAATATACTTACCCAttctattttataagaacaaac
taccgggtgcgccacaaaaatgtttctctctttaaaactaattttctcaa
aatctaagtaCTAGTATTTGAAACAAGATTAAGAAATTAAGAATACGCCA
ATCAACCCTTGCACCACTAGAGGGCTGGGTTTGAGTTACCAGGAAGGAAC
AACATTAAAATgtttgaagacattgcattgacatccttttaaaacaaata
atttCAACGTTGTTTCCTTGTAAATTTATTACCAGACCCCTCAATAGCCG
ACCGCGTCGGTAAAAGCTAATATTTGTGTATTTCAATTCAATGATTAGGA
CTATCAATCTTTTTGTAAACTATTAAACTTAATTCCCGTTCATGAAGCCT
TCTCAGCATAAGGATTGATAGGTCAATTCGACTATTTTCTTTATTAGATG
ATCGATCAAATCCACAGACTCAATACGACATTGAAATGAAGGGTATGTGT
TTATCTTTAAGTTTTGGTAAATAACAAGAGCCTTATATTAGCCATCCTTT
CTAATTAGATCATAAAACGAAACCATACACCACCTCCCATGTGCGGAAAT
CCTCCTTTTGTGGTTTATGGAGGGTTTTACCAACTGTTTATATAAATATA
AGACAAGTTTTGTTTGTAATAGATGTTGCAGAGTGCTCAATGAAACCAGG
GCCaagtaaaatattaaaaatctcTTTCATCAcaacagaaaataaaaata
aaatgcacACTACTCAGAGTTGTGTGCTATTTTTTTGTACACCTGACAAG
TGCAGTAGCACGAAACTCTGAGTAGTGTACTTTTTTAGTGATGAAAGGTA
TCTTTTactatcggcgatccaaaaaatatctgcaatctgattggttaaaa
aattttctccatcacgtatcacgaaaatcgctaaaatttgtcatcacgca
aaaaatagcgaaaaaagcccaaatcacgcatcactcctcaaatttttgcc
ctatcaagCATCACGCCagaatcttgatcacgccatcacggcaaaaaaaa
tctctaatcacgccacaCAAGAAAAacgtcccaatcacgccatcacccaa
accgctggggggtagcctatactagacgtcacccacgtttttttttacgc
aattaacgtctattccactttgcgactttttcgaatgttttgaaccCGGG
TTTTCGGgatctaaacattcgattttttgacgtcacttttaattttcgaa
gctcctgcaggagcaaaataatcgaatttgcgtcaaagcacttgaaaggc
ttctatttttcgaaaatcgtcaaagtggaactcactaacaAACGAGtagc
ctatctctatcccaacacgcgattttttgATCACTCTTTGGTCTATCACT
TGTTACCACTTTCGCGTCTACGATGGAGAACTTGACCGAATTTGTCGACg
ccgtgtttttttataaaatttgacGTCACTAGCGACGAAAAAAGATGGCG
AccgaaaacataaacaaagaaggGCGGgtggaaaggaaaagaaaaaactt
gAATGTTAAGACTTATTGCAGAATtttttttaaatattgtgaGGTGTGTC
GCTGTGTTGATTgtacaaaatgttacaaaaattaaacacaacaaaaaatg
tattgagtgttgtttataaaatttcactacctaaaaagtaaaaaacagaT
AAAGTAACAACCCTACTTCATCAATAAaagcattgaaaataaattgctca
aattttttgaaatagaaaatataaaGCTTACCACCATACATAAAAACGGA
GGAAtacaagaattaaaaaaaaaattNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGATTCCTACcactttg
taaaaaaatatgcaaaattcccttgaaaagagtaaaaaaagtataaaata
tataaataagatTTACTTTGATTTCTGGATTTGTACTTTGCATTTATCAA
GCTGAAAcatgttttgattatttcgaaactttcaaataattatttctaTA
CTCATAGTGGTCTTCGGTAGAATCcacaaaaggaaagaaaaggtATCTTT
TAAAGGTCTCCTATCTCGAGGATTATTCtgttaaaaattataaataaaat
aatccaGCTGTAGACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgggggggggggggctcatatatcttgtattttacat
gtacaaaattgacgaaaagatgttgttgtattgtagcggtagaagtaatc
taacgtcactttgcaaaaaaggtGCCCTGCACTTTTTTCCAAcatgcatt
ttttgggtcaccgataaaccagttatcagacatttccCCGtacaatatga
aaatatttcattcgttccggattttccgtatatttacggaaaaatattgt
acggaaaaatcttggaactcgtaaaatatttctcatattgtactcgcacc
TGTCcaataactattacatattttAAATATAAGACAACAGAGTAATAACT
TAGAACGTTTTTAAAGAAATGTTATTTTTATGATAgagaaattctcaaaa
tttgtgcttGTGCGGAGTGGGACAGAGAAAAGGTTGTTCTTTTATTGGTt
caaaaatgctgtgtaagcaactGGTTGGAGAAATACGTTACATAATGTCC
TTTAATATTGCTTCGTTTTACAGATCTGGTGAACATGGTTGCACAACGTT
ACCAAGAACCACCAGATTTCTTGTACAACATGGGAAACAATGGCCGTGTG
GTTATCATCAATAATGTGCATTTTGACCATTTCAAAGAAAGAATTGGTTC
TGATCAAGATGTTAAATTATTACAAGATTTCTTCCTATACACCATCCGTT
GGAATGATAATTTAGAAATATATCGAGACTTAACTGTTGCTAAGATGAAA
GATAAACTCACCAATTTGAGTCGGTACGATTTCACACGAAACGGtgcttt
ttttcttattatctTAAGCCATGGAAATGAGTATGGAATATGTGGACGTG
ATAGTCGTCAAAAAGATCATCGAAATGTGTTAAAAATTGAGGAAGATGTT
CTCCCACTATTCACCAGTACAAAATGTCCTTCTCTTGTTGAAAAACCTAA
AGTCTTTATTATGCAAGCGTGCCGTGGAGACGTTGATGATTTGGGTTACT
GTATTGAAGATACGGACGCCGACTGTGCTGCACCACCGACGAATTTCAAA
CGCCATGTTCCAGACACGAGTGAGTTTCTCCTTTGTTATCCATGCAGTCC
TGGATACACTTCAGTCAGGAATCAAGCTTTCGGCTCAGTGTTTATTAATT
CTCTGGTACAAATTTTCAAAGAGCAATACAAACGAGAAGATATTTTACGA
ATGTTGCTCCGAGTTAACCATAAGATTGCAAAGGACACTAATTCGTTACG
TATTAAACAGATGCCCTGTCATGATAACCGTTTAACTCGGTTGACtttct
ttgaagactttttcttggagaaaaagaaacttttgatTGAAAGTGGTGCA
TTATCATCTTAAAACACCTGCCAATGATCTATTTCAGCTTACTGGTGCAC
AGTACTGGACCTAGACGAGGTATTGAATTTAGTGTTCTGTTCAGTAAACA
CGTGTTTAATACCATAAATACTCATGCGTacatttttttggacctacctg
gaggtcctataaattaacctttgtccgtccgcccgtccgtctgttaccag
ttattgttttcattttaatttttatttaactttaatCATCCGGTAGGTcg
attcagcatctagcttgtttacaaaagaagttttttaaagtttttaaaag
ttttatctATATCCCagcaggcacacaacgttgtttcaacgtctatctaa
cgttcactacgtccatataacgttatattaacgtttaaacaacgttgtgt
gccagctgggatcatGATGGATTGGGCGTCACGGatgttttttattaaat
tttggccgaaacttttgattgaaaatggGTGCATTATCATCTCAAAACAC
CTTTCAATAACTTAGCCTTGCTTGCATAcatacagtgccgtaggaacAAT
ATGGGGTTCTGAATTCaattttctgttttgaaaaCGAGCGCTTAATGCTA
TAAAACTGGTTCTGTTCATGTTTTACAAAAGAGATcaatactttaaattt
ttatctttttaccATGATGGCTTGGGTGCCACTGGTAACTTCTATTAAAT
GTCGG Coding sequence (CDS) from alignment at scaffold_311:210536..217490+ >TCONS_00058430 ID=TCONS_00058430|Name=TCONS_00058430|organism=Clytia hemisphaerica|type=CDS|length=3465bp|location=Sequence derived from alignment at scaffold_311:210536..217490+ (Clytia hemisphaerica)
ATGTCAGGACAAGATCAAAGAGATGGCCAAACTCCATACGTCAAAGCAGA
TAATGGTAGTACTATTCATGGTGGTGTCAATATTACTAATGGACCAGCCA
CCATCATTGGTGGAAATCAAATCATCAATAACATTCCTGCTGGAGGACAG
CCTCCACCATACATTGATACTGAGAATGTGATGGCGAATAGAAGAAATTT
GCCACCTGTTCAAGGAGAAAGGAAAGCACCAAATGATCAAAGACCTTTCC
AAAGAGAACCATCTCAAAGTGATGATCGATCAAATCCACAGACTCAATAC
GACATTGAAATGAAGGATCTGGTGAACATGGTTGCACAACGTTACCAAGA
ACCACCAGATTTCTTGTACAACATGGGAAACAATGGCCGTGTGGTTATCA
TCAATAATGTGCATTTTGACCATTTCAAAGAAAGAATTGGTTCTGATCAA
GATGTTAAATTATTACAAGATTTCTTCCTATACACCATCCGTTGGAATGA
TAATTTAGAAATATATCGAGACTTAACTGTTGCTAAGATGAAAGATAAAC
TCACCAATTTGAGTCGGTACGATTTCACACGAAACGGtgctttttttctt
attatctTAAGCCATGGAAATGAGTATGGAATATGTGGACGTGATAGTCG
TCAAAAAGATCATCGAAATGTGTTAAAAATTGAGGAAGATGTTCTCCCAC
TATTCACCAGTACAAAATGTCCTTCTCTTGTTGAAAAACCTAAAGTCTTT
ATTATGCAAGCGTGCCGTGGAGACGTTGATGATTTGGGTTACTGTATTGA
AGATACGGACGCCGACTGTGCTGCACCACCGACGAATTTCAAACGCCATG
TTCCAGACACGAGTGAGTTTCTCCTTTGTTATCCATGCAGTCCTGGATAC
ACTTCAGTCAGGAATCAAGCTTTCGGCTCAGTGTTTATTAATTCTCTGGT
ACAAATTTTCAAAGAGCAATACAAACGAGAAGATATTTTACGAATGTTGC
TCCGAGTTAACCATAAGATTGCAAAGGACACTAATTCGTTACGTATTAAA
CAGATGCCCTGTCATGATAACCGTTTAACTCGGTTGACtttctttgaaga
ctttttcttggagaaaaagaaacttttgatTGAAAGTGGTGCATTATCAT
CTTAAATGTCAGGACAAGATCAAAGAGATGGCCAAACTCCATACGTCAAA
GCAGATAATGGTAGTACTATTCATGGTGGTGTCAATATTACTAATGGACC
AGCCACCATCATTGGTGGAAATCAAATCATCAATAACATTCCTGCTGGAG
GACAGCCTCCACCATACATTGATACTGAGAATGTGATGGCGAATAGAAGA
AATTTGCCACCTGTTCAAGGAGAAAGGAAAGCACCAAATGATCAAAGACC
TTTCCAAAGAGAACCATCTCAAAGTGATGATCGATCAAATCCACAGACTC
AATACGACATTGAAATGAAGGATCTGGTGAACATGGTTGCACAACGTTAC
CAAGAACCACCAGATTTCTTGTACAACATGGGAAACAATGGCCGTGTGGT
TATCATCAATAATGTGCATTTTGACCATTTCAAAGAAAGAATTGGTTCTG
ATCAAGATGTTAAATTATTACAAGATTTCTTCCTATACACCATCCGTTGG
AATGATAATTTAGAAATATATCGAGACTTAACTGTTGCTAAGATGAAAGA
TAAACTCACCAATTTGAGTCGGTACGATTTCACACGAAACGGtgcttttt
ttcttattatctTAAGCCATGGAAATGAGTATGGAATATGTGGACGTGAT
AGTCGTCAAAAAGATCATCGAAATGTGTTAAAAATTGAGGAAGATGTTCT
CCCACTATTCACCAGTACAAAATGTCCTTCTCTTGTTGAAAAACCTAAAG
TCTTTATTATGCAAGCGTGCCGTGGAGACGTTGATGATTTGGGTTACTGT
ATTGAAGATACGGACGCCGACTGTGCTGCACCACCGACGAATTTCAAACG
CCATGTTCCAGACACGAGTGAGTTTCTCCTTTGTTATCCATGCAGTCCTG
GATACACTTCAGTCAGGAATCAAGCTTTCGGCTCAGTGTTTATTAATTCT
CTGGTACAAATTTTCAAAGAGCAATACAAACGAGAAGATATTTTACGAAT
GTTGCTCCGAGTTAACCATAAGATTGCAAAGGACACTAATTCGTTACGTA
TTAAACAGATGCCCTGTCATGATAACCGTTTAACTCGGTTGACtttcttt
gaagactttttcttggagaaaaagaaacttttgatTGAAAGTGGTGCATT
ATCATCTTAAATGTCAGGACAAGATCAAAGAGATGGCCAAACTCCATACG
TCAAAGCAGATAATGGTAGTACTATTCATGGTGGTGTCAATATTACTAAT
GGACCAGCCACCATCATTGGTGGAAATCAAATCATCAATAACATTCCTGC
TGGAGGACAGCCTCCACCATACATTGATACTGAGAATGTGATGGCGAATA
GAAGAAATTTGCCACCTGTTCAAGGAGAAAGGAAAGCACCAAATGATCAA
AGACCTTTCCAAAGAGAACCATCTCAAAGTGATGATCGATCAAATCCACA
GACTCAATACGACATTGAAATGAAGGATCTGGTGAACATGGTTGCACAAC
GTTACCAAGAACCACCAGATTTCTTGTACAACATGGGAAACAATGGCCGT
GTGGTTATCATCAATAATGTGCATTTTGACCATTTCAAAGAAAGAATTGG
TTCTGATCAAGATGTTAAATTATTACAAGATTTCTTCCTATACACCATCC
GTTGGAATGATAATTTAGAAATATATCGAGACTTAACTGTTGCTAAGATG
AAAGATAAACTCACCAATTTGAGTCGGTACGATTTCACACGAAACGGtgc
tttttttcttattatctTAAGCCATGGAAATGAGTATGGAATATGTGGAC
GTGATAGTCGTCAAAAAGATCATCGAAATGTGTTAAAAATTGAGGAAGAT
GTTCTCCCACTATTCACCAGTACAAAATGTCCTTCTCTTGTTGAAAAACC
TAAAGTCTTTATTATGCAAGCGTGCCGTGGAGACGTTGATGATTTGGGTT
ACTGTATTGAAGATACGGACGCCGACTGTGCTGCACCACCGACGAATTTC
AAACGCCATGTTCCAGACACGAGTGAGTTTCTCCTTTGTTATCCATGCAG
TCCTGGATACACTTCAGTCAGGAATCAAGCTTTCGGCTCAGTGTTTATTA
ATTCTCTGGTACAAATTTTCAAAGAGCAATACAAACGAGAAGATATTTTA
CGAATGTTGCTCCGAGTTAACCATAAGATTGCAAAGGACACTAATTCGTT
ACGTATTAAACAGATGCCCTGTCATGATAACCGTTTAACTCGGTTGACtt
tctttgaagactttttcttggagaaaaagaaacttttgatTGAAAGTGGT
GCATTATCATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058430-exon-scaffold_311-1491911889:210536..210578 | TCONS_00058430-exon-scaffold_311-1491911889:210536..210578 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1510915933:210536..210578 | TCONS_00058430-exon-scaffold_311-1510915933:210536..210578 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1575043694:210536..210578 | TCONS_00058430-exon-scaffold_311-1575043694:210536..210578 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1491911889:212038..212342 | TCONS_00058430-exon-scaffold_311-1491911889:212038..212342 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1510915933:212038..212342 | TCONS_00058430-exon-scaffold_311-1510915933:212038..212342 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1575043694:212038..212342 | TCONS_00058430-exon-scaffold_311-1575043694:212038..212342 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1491911889:212783..212827 | TCONS_00058430-exon-scaffold_311-1491911889:212783..212827 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1510915933:212783..212827 | TCONS_00058430-exon-scaffold_311-1510915933:212783..212827 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1575043694:212783..212827 | TCONS_00058430-exon-scaffold_311-1575043694:212783..212827 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1491911889:215959..217490 | TCONS_00058430-exon-scaffold_311-1491911889:215959..217490 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1510915933:215959..217490 | TCONS_00058430-exon-scaffold_311-1510915933:215959..217490 | Clytia hemisphaerica | exon |
| TCONS_00058430-exon-scaffold_311-1575043694:215959..217490 | TCONS_00058430-exon-scaffold_311-1575043694:215959..217490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:210536..217490 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008234 | cysteine-type peptidase activity |
| GO:0004197 | cysteine-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004197 |
cysteine-type endopeptidase activity |
| molecular_function |
GO:0008234 |
cysteine-type peptidase activity |
Blast
BLAST of TCONS_00058430 vs. Swiss-Prot (Human)
Match: CASP7 (Caspase-7 OS=Homo sapiens GN=CASP7 PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.580e-25 Identity = 79/229 (34.50%), Postives = 115/229 (50.22%), Query Frame = 3
Query: 510 RIGSDQDVKLLQDFFLYTIRWNDNLEIYRDLTVAKMKDKLTNLSRYDFTRNGAFFLIILSHGNEYGICGRDSRQKDHRNVLKIEEDVLPLFTSTKCPSLVEKPKVFIMQACRGDVDDLGYC-----IEDTDADCAAPPTNFKRHVPDTSEFLLCYPCSPGYTSVRNQAFGSVFINSLVQIFKEQYKREDILRMLLRVNHKIAK-------DTNSLRIKQMPCHDNRLTR 1160
R G+D+D + L F ++ +Y D + AKM+D L S D T F I+LSHG E I G+D V I+ D+ F +C +L+EKPK+F +QACRG D G I DTDA N + +P ++FL Y PGY S R+ GS F+ +L I +E K +I+++L RVN ++A+ D + KQ+PC + LT+
Sbjct: 87 RNGTDKDAEALFKCFR---SLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFACILLSHGEENVIYGKDG-------VTPIK-DLTAHFRGDRCKTLLEKPKLFFIQACRGTELDDGIQADSGPINDTDA-------NPRYKIPVEADFLFAYSTVPGYYSWRSPGRGSWFVQALCSILEEHGKDLEIMQILTRVNDRVARHFESQSDDPHFHEKKQIPCVVSMLTK 297
The following BLAST results are available for this feature:
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