TCONS_00058427 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00058427
Unique Name	TCONS_00058427
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1004

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_311:94015..98980+
coding sequence from alignment at scaffold_311:94015..98980+

transcript sequence

>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=transcript|length=1004bp
ATTTTAAgctattattattttcttttcagtgacaaaataaagtaaaaaat
aaaaaatataaatataatatatataggTAAAAAGAGGCAATATGCTACTT
AGATATACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGAC
GAGGTcagcattacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaa
gtGGTCGGACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAA
CGAATCATCTGCCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGAT
CGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTC
ACATGTACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATT
TACGACACAATGCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGG
ACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGT
TACGTCACGCTCTTCCCCACTCACGTATCATGCTACATCAACCCCACGGT
GGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAAGCCAAagagatttt
aaaattgaaatcaatGTTGAACGAGATATACAGCAAGCACACTGGACAAG
ACGTCAATGTCATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCT
GAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCC
CGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCGAAAAgtaaaatc
cataatggcgtgataattttttagttattttttagattttttatttagac
atttttcaaaagttttttccttttcacagttaTAATTTTCTACTTGACcg
aaaaaaagaattcaataaaattgaaaagaagTTTGCTTTTTACTTGTAGC
TTGGTGAAGAGAGAGGAGGGGTCGTTTCTCATCTCGTGTCGATTAGAAGG
CGTT

Run BLAST on NCBI

protein sequence of TCONS_00058427-protein

>TCONS_00058427-protein ID=TCONS_00058427-protein|Name=TCONS_00058427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MLLRYTKPLLRTATCGCFMTRSALRNVSYIPMVVEQSGRTERSYDIYSRL
LKERIICLFGPINDTVSSLIVAQLLFLQSESSKKPIHMYINSPGGVVTAG
LAIYDTMQYIQPPVATWCVGQACSMGSLLLASGAPGLRHALPHSRIMLHQ
PHGGAQGQATDIEIQAKEILKLKSMLNEIYSKHTGQDVNVIEEKLDRDNF
MSPEEAKTFGVVDHVLNQTPVATDNQDNKDGSEK

Run BLAST on NCBI

transcript from alignment at scaffold_311:94015..98980+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=transcript|length=4966bp|location=Sequence derived from alignment at scaffold_311:94015..98980+ (Clytia hemisphaerica)
ATTTTAAgctattattattttcttttcagtgacaaaataaagtaaaaaat
aaaaaatataaatataatatatataggTAAAAAGAGGCAATATGCTACTT
AGATATACAAAGGTATGTATGCGATTCGTTCTTCAATGGATTACCTAAGC
ATTGCGATGATTCGTAACTATTGCTGTCTTTTCGGAATAAGGGAACCGAA
ATATATACAGTTTACTCGCTAGATGTGCTTCTAGAGAGAGAGATAGTCCT
TTCGATTAACGGAATATGACAGCATTTGCTATTCTAGGATATGAAAATCA
CTGATCTTATCTGACTCCCTGAAAACGTGCTCGTACCACACATCATAACT
TTCTGACATGACgtttacctttttttataacttttagcCTCTTCTTCGCA
CGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcG
TATATCCCGATGGTCGTGGAGcaaagtgtaatttttcttttgtttctttc
agcGGTAGTTTTCAGTCATCAACAACCTTTCAGTGGACATTTaaatacag
ttgatgctctctaattcgacgttctactattcgatacgctacattattcg
ataatattgaaatcgACCGTCAACAGGAAACTTTCATAAacgacattcta
ctattcgataagctcccttatttaatgaaaatccaattctccTTGACGAT
CGAATTTTAGAGCGtcttttatgagagtttcttgatGGCGGTGACTTTCA
TCAATATCGAAGTTTCATTATTCCTTTACTTTAACTTGTGGTATGACGAT
ATTAACACAAAGTGTTCAATGTGACAATATCTCTTTTTGGCGCACCACAA
ATGTCGAATGTTGTAAAAAAACTTCGTTCATTGCTTTTCATGACAATATT
TAGGCACCTAATTTCTTACCAATTTCCTATTTCCATATTAGGTATTAGTA
TGAATCATAATTATAacaactttcttctttttcatcaacTGTAGGGTCGG
ACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCAT
CTGCCTGTTTGGTCCCGTAAGTTTGTTATTTCCATAAAATTAAGTTCATC
CGTTTGCTTATAATTTCTTATGTCACATGCCAACGATGGTATGACTGAAT
ATTGGAGAGCTAACTGATGCTTTTCTTGAAGGCTTTTACCCTCCAAAttg
taaaacttttttcattaaTTCTTTTATGACTTCTGCTCCTacctagccta
gttaactaagttcgtattcacaaggctaggacacactgcttatggcaata
tagcgttttcggcgctccaaagattttttatatttaaggattttaagttt
gcctatttagtcacaacttaccatcataTTTATCCTAGTGAATGAATCAA
ACTTGCTGAAATTTCTAAGCTATTCTGCTCCCTTTGTTCCTGCTCCTTGG
TAATAAGTGAGTGTTTATAGTGAGAGAGTCCTAATATCATTTTTATATTT
CTGATGAACTGCTAAATCTTCATTTCTTCAGATCAATGACACTGTATCCA
GCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAA
CCAATTCACATGTACATCAACAGTCCAGGTATGAATATTTGATGTTGCCT
GAAGTTAGAACGTCGCAGTCGGAGCTTTTCAATGTTTACAgttcaattga
tttttaattttttattgtatttggaGCTTTTTTAGCTATACTACTTAGAT
TTTTATCATGACGTTCTAAATCTATAGGCCTAGCAAGCGTGTACCAAGCG
TGTTGGGGCTTAATATTCTGAAAATATTCCGAACGCTGTTATTCTGTTGC
ATATGAAGATGTTCCAggtaccaaagatttccaaaatggtactttgTCCC
TCTCTAAGAATGCTCAGCAAtcaaagagacggatcaagggtaagtaggGA
CAATCCAGGGAGAAGAATGACGCCCGCCATTACATTCggatagatagcta
tcgaaaaaggAGCCTTCGGGCTAGCTTCGGCTGCAATCGCATTTTATACA
taagaattaaaattttcatctttttaggAGGAGTGGTGACGGCAGGTCTT
GCAATTTACGACACAATGCAGGTTCGATGTCCCTTCTTTGTCATTTCGAC
ACCAAGACagtttgatcatttaaaaaagtcgATTAATATACAGTAGTCAA
AGCAAGGTTTCGTCTGAGATAGACAATTGATTTTTCACAGCAAATTTGCA
CacattcttgaaattttggtctcTCATGTAGAAATTCAAGACGGAAAAGC
CTCTTCATAAACTTCACTGAGaggaaataaattttaaaactgAATGTAAC
ACTGATTGAAAGATAGGGCGATAAATCActtattctttttttcttcaaaa
aagctgtaaaacttttttaacaaaGGTAATCTGGAACCATTCTCCTACTC
TTCAGTtactgtttttcttttattttcagtaCATCCACTATTATCTTTCT
TCAAAACAGTTATGATGACATTTTTAACAGTGTTCTCTTACTCTACTGGT
ACTCTACTACTCTAAACTTctatctttttctttcattttcagtacATCCA
ACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCC
TCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCA
CGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGTGTGTTCATCTAT
ATTATCAACTGTGATACCCATGGAAGTTGTTTTTTGAACTTCGAACTCTC
TTAGTCTACACATAGACAGCTTcgggcttttaggccttactttTGGTCCA
TAGGCACTGCTAtcggcggccactagtgacccccatcgggaatttgcttt
ttaatagaattaaacacaaaaaaatgttaaaaacacagctgatcggctta
ggtttcgaaacccTCTATTGTTTCATCAAAACCTCAATGCGCATGCGATG
TATCCGGAAAAATTTAATATTCAAAACAACAGCAGTgcgcatatcccgaa
gagtaggagtttcacgctcgaaacgaagaaagatatgacgtagcctaaaa
TTCTCTTAGTTTCACCTCACCCTCTTTAACAACTTTACCTATGGGAGTTT
TTATTGAACTTCGAGTTCTCTTACTTTCTCTATATTACCGCAAACCGCTT
TTGTCTATCGGCCGCTTTTACCCAGGGGACTTCTACAacttgaatgtctc
cttaacttgaacaagtttgctggtcccttcagttagaAATACCTTTTAAA
TTTACTTATATCTCGAAATTTTCTTGTCTCGAACAAATTTCTTTATTCCG
CGTGGGTTctagttatagagactccactgaATTGATTTTATTCCTAATCC
GTCAAAATCTataaacttacttacttttctATTTAATTTCTGACAAATAT
TGTTATTGACTTTGTACATTTCTTCCATTAACAGGGCCAAGCAACAGACA
TTGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAG
ATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGGTAAATCTGC
TCATTTCTCATTTTGTCAGTAATGATagataggccttttcataaattatg
tcacGACCAACTCGCGCCTTggggtttttataagaatgggctgttccaga
aatagtctgtacccgctattttgaggaggtgtgacgtccagggtggtctg
gaaattaaaaaatccaaaatggtcTGGTTTTTCAAGTGTAAAAAGTGGTC
AGCAAAATGAGGTGGGAAATCCAGGATGGTAAGTAAAGCGGGgacaaaaa
tccagggtggtcaaaaaaagaagaaaaaaaatacaatagagtcctgaaaa
attaaaaaaaaaaattcaggggGGGTCACCTTTCGCAAAAATGACCTCAA
CATAGGggtcacaatttttttctgaaatagcCCAATGGTGTACTTTgaat
gagggtcaagtattcttaagaaattgagGAGTgtaatattcttaacgtat
tcttacttttttaaacttaacttttttacaaacatgagaaatgataaATT
TGATAGTTTGAGACTTTCGATTGTACTTTGGAatctaaaattatatttct
gcctcaaagtttcAAATTaatagggtattcttacgattttgccaatttca
ccctgatattcttacaGAACATGTTCTAATAAATAAGTGTGTATTGCTAT
GAGAACTTATCCAATCGGAATCTTTTAGAGgtgttttcttttcattaaaa
aatccaAGAGTCTCAAGAGAGATATATCATTTTATTTTAGCTGTTACGTC
TTTTGAGATATGACAATCTAAAGTATCTAGaaatgggttcttacacggCT
CTACGCCAAAActctattgtctttttgttaAATGTATATGACTTGTAACT
TATTCATTTAGATTTTTTAGTTAGtaaggcaaaaatattttgaggcttTT
CTTAGGACAATAGAAGGAATctacaggcaaaaaaaaaatctcaaaccatc
ttTAAAACATCCCAATTTATTGTGTTGCTGCAATTAAACAACtttcttca
aaatattcttattttcatctttcaTAGAGGAAAAACTGGACCGCGATAAT
TTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCT
TAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCG
AAAAgtaaaatccataatggcgtgataattttttagttattttttagatt
ttttatttagacatttttcaaaagttttttccttttcacagttaTAATTT
TCTACTTGACcgaaaaaaagaattcaataaaattgaaaagaagTTTGCTT
TTTACTTGTAGCTTGGTGAAGAGAGAGGAGGGGTCGTTTCTCATCTCGTG
TCGATTAGAAGGCGTT

Coding sequence (CDS) from alignment at scaffold_311:94015..98980+

>TCONS_00058427 ID=TCONS_00058427|Name=TCONS_00058427|organism=Clytia hemisphaerica|type=CDS|length=5640bp|location=Sequence derived from alignment at scaffold_311:94015..98980+ (Clytia hemisphaerica)
ATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTG
TTTTATGACGAGGTcagcattacgtaatgtttcGTATATCCCGATGGTCG
TGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTACTCGAGGCTT
TTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATGACACTGTATC
CAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGA
AACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGT
CTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAGTAGCGACATG
GTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTG
CACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCATGCTACATCAA
CCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAAGCCAA
agagattttaaaattgaaatcaatGTTGAACGAGATATACAGCAAGCACA
CTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCGCGATAATTTT
ATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAA
CCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAGCGAAA
AgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGACATGC
GGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGTATATCCCGAT
GGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTACTCGA
GGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATGACACT
GTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAGAGCAG
CAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGTGACGG
CAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAGTAGCG
ACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTTGCTTC
TGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCATGCTAC
ATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGATTCAA
GCCAAagagattttaaaattgaaatcaatGTTGAACGAGATATACAGCAA
GCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCGCGATA
ATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACCACGTG
CTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGATGGCAG
CGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCACGGCGA
CATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGTATATC
CCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGATATCTA
CTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCATCAATG
ACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAATCAGAG
AGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGAGTGGT
GACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACCTCCAG
TAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCCTCCTT
GCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGTATCAT
GCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACATTGAGA
TTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAGATATAC
AGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTGGACCG
CGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGTCGACC
ACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACAAAGAT
GGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTTCGCAC
GGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgtttcGT
ATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCATATGAT
ATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGTCCCAT
CAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTTACAAT
CAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAGgAGGA
GTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATCCAACC
TCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTCCCTCC
TCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACTCACGT
ATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACAGACAT
TGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAACGAGA
TATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAAAACTG
GACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGTGTTGT
CGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGATAACA
AAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTCTTCTT
CGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgtaatgt
ttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACGTTCAT
ATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGTTTGGT
CCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTATTTTT
ACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAGTCCAG
gAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGtacATC
CAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATGGGGTC
CCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCCCCACT
CACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAGCAACA
GACATTGAGATTCAAGCCAAagagattttaaaattgaaatcaatGTTGAA
CGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGAGGAAA
AACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCTTCGGT
GTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAACCAAGA
TAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAAGcCTC
TTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcattacgt
aatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACAGAACG
TTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTGCCTGT
TTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGTTGTTA
TTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATCAACAG
TCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAATGCAGt
acATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCAGTATG
GGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCTCTTCC
CCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGGCCAAG
CAACAGACATTGAGATTCAAGCCAAagagattttaaaattgaaatcaatG
TTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTCATCGA
GGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAAAACCT
TCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGGACAAC
CAAGATAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATATACAAA
GcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTcagcat
tacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTCGGACA
GAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATCATCTG
CCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGCTCAGT
TGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGTACATC
AACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGACACAAT
GCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGCTTGCA
GTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTCACGCT
CTTCCCCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCGCAGGG
CCAAGCAACAGACATTGAGATTCAAGCCAAagagattttaaaattgaaat
caatGTTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCAATGTC
ATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAAGCGAA
AACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGCTACGG
ACAACCAAGATAACAAAGATGGCAGCGAAAAgtaaATGCTACTTAGATAT
ACAAAGcCTCTTCTTCGCACGGCGACATGCGGCTGTTTTATGACGAGGTc
agcattacgtaatgtttcGTATATCCCGATGGTCGTGGAGcaaagtGGTC
GGACAGAACGTTCATATGATATCTACTCGAGGCTTTTAAAAGAACGAATC
ATCTGCCTGTTTGGTCCCATCAATGACACTGTATCCAGCTTGATCGTGGC
TCAGTTGTTATTTTTACAATCAGAGAGCAGCAAGAAACCAATTCACATGT
ACATCAACAGTCCAGgAGGAGTGGTGACGGCAGGTCTTGCAATTTACGAC
ACAATGCAGtacATCCAACCTCCAGTAGCGACATGGTGTGTGGGACAAGC
TTGCAGTATGGGGTCCCTCCTCCTTGCTTCTGGTGCACCAGGGTTACGTC
ACGCTCTTCCCCACTCACGTATCATGCTACATCAACCCCACGGTGGAGCG
CAGGGCCAAGCAACAGACATTGAGATTCAAGCCAAagagattttaaaatt
gaaatcaatGTTGAACGAGATATACAGCAAGCACACTGGACAAGACGTCA
ATGTCATCGAGGAAAAACTGGACCGCGATAATTTTATGTCGCCTGAAGAA
GCGAAAACCTTCGGTGTTGTCGACCACGTGCTTAACCAAACTCCCGTTGC
TACGGACAACCAAGATAACAAAGATGGCAGCGAAAAgtaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_036815	XLOC_036815	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00058427-protein	TCONS_00058427-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_311	supercontig	scaffold_311:94015..98980 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
134.771	133.033	58.5619	50.2246	50.3713	43.6085	80.3808	84.3827	63.4406	76.3455	50.4568	45.4133	31.0743	34.6752	37.9596	40.4645	80.837	71.2494	13.1879	19.4096	47.4617	44.4483	91.7431	83.5009	45.5653	42.2054	56.1124	53.8113	64.9358	60.7091

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001907	ClpP
IPR023562	ClpP/TepA
IPR018215	ClpP_Ser_AS
IPR033135	ClpP_His_AS
IPR029045	ClpP/crotonase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004252	serine-type endopeptidase activity

Blast

[Close]

BLAST of TCONS_00058427 vs. Swiss-Prot (Human)
Match: CLPP (ATP-dependent Clp protease proteolytic subunit, mitochondrial OS=Homo sapiens GN=CLPP PE=1 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 8.854e-91
Identity = 147/228 (64.47%), Postives = 181/228 (79.39%), Query Frame = 2

Query:  110 KPLLRTATCGCFMTR----SALRNVSYIPMVVEQSGRTERSYDIYSRLLKERIICLFGPINDTVSSLIVAQLLFLQSESSKKPIHMYINSPGGVVTAGLAIYDTMQYIQPPVATWCVGQXXXXXXXXXXXXXXXXRHALPHSRIMLHQPHGGAQGQATDIEIQAKEILKLKSMLNEIYSKHTGQDVNVIEEKLDRDNFMSPEEAKTFGVVDHVLNQTPVATDNQDNKD 781
            +P  RT   G  + R    +A R +  IP+VVEQ+GR ER+YDIYSRLL+ERI+C+ GPI+D+V+SL++AQLLFLQSES+KKPIHMYINSPGGVVTAGLAIYDTMQYI  P+ TWCVGQA SMGSLLLA+G PG+RH+LP+SRIM+HQP GGA+GQATDI IQA+EI+KLK  L  IY+KHT Q + VIE  ++RD +MSP EA+ FG++D VL   P     QD +D
Sbjct:   32 RPPQRTLQNGLALQRCLHATATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESAMERDRYMSPMEAQEFGILDKVLVHPP-----QDGED 254

The following BLAST results are available for this feature:

BLAST of TCONS_00058427 vs. Swiss-Prot (Human)

BLAST of TCONS_00058427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CLPP	8.854e-91	64.47	ATP-dependent Clp protease proteolytic subunit, mi...	[more]

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TCONS_00058427 (transcript) - C. hemisphaerica