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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058424 ID=TCONS_00058424|Name=TCONS_00058424|organism=Clytia hemisphaerica|type=transcript|length=1481bp
TTTTATTAACAcctggacactatatcctccccCATGTACGAATATTATTT
GGAAGAACCCAATGGAGATTCTAACGAGAACGAGAGGGAGAAGATTGTTG
TTCATCGGGTATATCATTTGAACAATATTTCTACTTTTTTGAAACACTTG
AAAATCAGAGCAAGAAGAGGAACAACTAACCCCATTTCGAGCCCTTCAAA
ATTTCCATtggtatttaatttcgcggattctcgcggatgacacccaaatc
cgcgaaatccgcgaaatttaatccccgcaaaagtttatcccattaaagta
atagctttttctttataagcaaccaggttgctaagcCTTGACCTTATACT
AAATACCTTATACCTTATCTCCTaaagttaaagtttttttaaagataatc
TAACAATGACAAACGGTAGCCCATGACCCAACAAGCATAAATATGGAATG
AAATCAGGGTTAGTCAAAGCAAATTTCTCAGAAAGGGAGCCGAAAATTGg
ggttgcttattaaaaaaattggtgTATGAGAACTCGAAATGAAATTAGTT
TGACAGGCCTTTGTAGGGTTTTGATTTTAGTTTTTCGACACAATTATTAT
ACAATATGACTTAGAACTAGATACATTTCCTATGTCAATAAATGTAGGTA
AAATCTCTGAAAACGTTtattttcaatagaccttttcataaattacgacA
AGAGCAACGCTTTCCTCGTTTTCAAACTACTGATGTGGTTATTGATTCCT
AGAGGAGTTCATAAGAAGTATTCTCCATTTATTAAAGTAAACACTTTAAT
ATTCAGGCTATTTGATCACCTTTGTTGGTGATAATTTcgatggtttcaaa
acgaggcagtcttttcactcaaaataatttatgaaaaggcctatctAAGA
TTTACAATTATATCTATAGGCCCATTGTTAAGGGGGCACCAACCTTTTTT
TACGACAGGCCGATTGTTTTTTATGCACCAAACATATAATTCGATAGTTT
ACACAGTTTTTTACAGAGGagatgaagtttttataagatactttaataat
tggtcatttgaagtaataaaaatgatgcgttctttagaaaaagtaattaa
attgttttattactggttgacgaccaaccaaatcaaatgagAGCTTGCAA
AAACTCCATGTCGTCCCATTTTTTATTGCGGATCACGACTATCACTGCAG
ACATTAATTCCTCTGTTGTTGGTAGCACACACCAAGTTAACGTTTTGACA
ACATCTTTGACAGAATGTACTGCTTGAGCATTGTAATGAACCCAATGAAC
ATCTGAAACTTTCACACGTGTCTCGTCGTAGCCTTGATAAAgccacaaaa
gattttttctgtgaaaaagaagatttgacatattgatttattttgtaaaa
cttgCATGCCAAAATACTGGGTTGACCAAAAATAGGACTGATTACTAGGT
TAAATGTTTTATAAGTTGAAGTACAGTCGAG Run BLAST on NCBI transcript from alignment at scaffold_311:57806..59339+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058424 ID=TCONS_00058424|Name=TCONS_00058424|organism=Clytia hemisphaerica|type=transcript|length=1534bp|location=Sequence derived from alignment at scaffold_311:57806..59339+ (Clytia hemisphaerica)
TTTTATTAACAcctggacactatatcctccccCATGTACGAATATTATTT
GGAAGAACCCAATGGAGATTCTAACGAGAACGAGAGGGAGAAGATTGTTG
TTCATCGGGTATATCATTTGAACAATATTTCTACTTTTTTGAAACACTTG
AAAATCAGAGCAAGAAGAGGAACAACTAACCCCATTTCGAGCCCTTCAAA
ATTTCCATtggtatttaatttcgcggattctcgcggatgacacccaaatc
cgcgaaatccgcgaaatttaatccccgcaaaagtttatcccattaaagta
atagctttttctttataagcaaccaggttgctaagcCTTGACCTTATACT
AAATACCTTATACCTTATCTCCTaaagttaaagtttttttaaagataatc
TAACAATGACAAACGGTAGCCCATGACCCAACAAGCATAAATATGGAATG
AAATCAGGGTTAGTCAAAGCAAATTTCTCAGAAAGGGAGCCGAAAATTGg
ggttgcttattaaaaaaattggtgTATGAGAACTCGAAATGAAATTAGTT
TGACAGGCCTTTGTAGGGTTTTGATTTTAGTTTTTCGACACAATTATTAT
ACAATATGACTTAGAACTAGATACATTTCCTATGTCAATAAATGTAGGTA
AAATCTCTGAAAACGTTtattttcaatagaccttttcataaattacgacA
AGAGCAACGCTTTCCTCGTTTTCAAACTACTGATGTGGTTATTGATTCCT
AGAGGAGTTCATAAGAAGTATTCTCCATTTATTAAAGTAAACACTTTAAT
ATTCAGGCTATTTGATCACCTTTGTTGGTGATAATTTcgatggtttcaaa
acgaggcagtcttttcactcaaaataatttatgaaaaggcctatctAAGA
TTTACAATTATATCTATAGGCCCATTGTTAAGGGGGCACCAACCTTTTTT
TACGACAGGCCGATTGTTTTTTATGCACCAAACATATAATTCGATAGTTT
ACACAGTTTTTTACAGAGGagatgaagtttttataagatactttaataat
tggtcatttgaagtaataaaaatgatgcgttctttagaaaaagtaattaa
attgttttattactggttgacgaccaaccaaatcaaatgagAGCTTGCAA
AAACTCCATGTCGTCCCATTTTTTATTGCGGATCACGACTATCACTGCAG
ACATTAATTCCTCTGTTGTTGGTAGCACACACCAAGTTANACTATCACTG
CAGACATTAATTCCTCTGTTGTTGGTAGCACACACCAAGTTAACGTTTTG
ACAACATCTTTGACAGAATGTACTGCTTGAGCATTGTAATGAACCCAATG
AACATCTGAAACTTTCACACGTGTCTCGTCGTAGCCTTGATAAAgccaca
aaagattttttctgtgaaaaagaagatttgacatattgatttattttgta
aaacttgCATGCCAAAATACTGGGTTGACCAAAAATAGGACTGATTACTA
GGTTAAATGTTTTATAAGTTGAAGTACAGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058424-exon-scaffold_311-1491911889:57806..59007 | TCONS_00058424-exon-scaffold_311-1491911889:57806..59007 | Clytia hemisphaerica | exon |
| TCONS_00058424-exon-scaffold_311-1510915933:57806..59007 | TCONS_00058424-exon-scaffold_311-1510915933:57806..59007 | Clytia hemisphaerica | exon |
| TCONS_00058424-exon-scaffold_311-1575043694:57806..59007 | TCONS_00058424-exon-scaffold_311-1575043694:57806..59007 | Clytia hemisphaerica | exon |
| TCONS_00058424-exon-scaffold_311-1491911889:59061..59339 | TCONS_00058424-exon-scaffold_311-1491911889:59061..59339 | Clytia hemisphaerica | exon |
| TCONS_00058424-exon-scaffold_311-1510915933:59061..59339 | TCONS_00058424-exon-scaffold_311-1510915933:59061..59339 | Clytia hemisphaerica | exon |
| TCONS_00058424-exon-scaffold_311-1575043694:59061..59339 | TCONS_00058424-exon-scaffold_311-1575043694:59061..59339 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:57806..59339 + |
Blast
The following BLAST results are available for this feature:
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