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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058419 ID=TCONS_00058419|Name=TCONS_00058419|organism=Clytia hemisphaerica|type=transcript|length=1602bp
CAAGCATGGAAGATagagagaaaaatgaaattaatctGTTGTTGGAAAAT
ATTGATGATGAAATAGAAGTAATTATTGAAGATCACAATAAACTTATTGG
TTTGAGTGCAGAAGAGTTGGAAGAAATATTTTCTGAAGAATTCGACCTTG
AAGAAATACCATCCCTTCAAGATcatgaagaaaacaaaacacCACCACAA
ACTACCACAACAGAAGTAGAGCCTGAGGCCCCAGTTACAAagaaacacaa
aacaaaatcaCCTCCCAAGTTCGTTTGTGATAAATGTAAATTGAAGTATG
TTCGACAATCTGCTTATGAGAAGCACTTATCAAAGTGTCTTTCTGAAGGA
GTTTTGGTTATTGAAAAAGaACTATTGTCCAACGTATTAATGGAAGAGTA
CAATAAGGAAGGACCAACCATGCTgaccaaaagttttgaaatggtGAAGG
GCAATAAAGTCTTCATGATTCAAAGGGAAAGCAGAGAGACTCTTGGAAAC
AAAGCTCTAAAACTTGCTACAACCATCCTCACAAAAAAGGAAACCACCGA
CTTCAAAGATTTTGCCTCAATGTTGTCCAAATTTTGTATAGGACTCCTCC
AACTGAAGACCAACAAAGCTGCTGCGCGTGAAACCATCAGTACTACACTT
CACCGTACCtgcaaaaatgaaagttttaaaaatgcaatGTCAAAACTGGC
AGTGAATGTTGACGAGGAGGTTTCACTGTTTTTGTTGAACAACATTTTTA
AGAGTTTTTTCCAGCTTTCCTTGACTTGGAGGAATGATAAGTTATTAACG
cggaattttaatgaaattgatGTCAAGTTGTCATCACAAGAGCAGAAAAC
TCTGCGGTATGTTGCTGGTTTCATACCATTTTCCCTctcaaaaagattta
aaaatagACAAGACACTGATATGGGAAAAGTTGTCGTGGAAACTATTGAA
ACGTGGCGTGCTAATcccaatgaaaataaaaaatcttttttggaattttc
aaaatcctGGACCGAAAGGGTAAACCGTGGTGGATTATTCCAAGTTAATG
AtgatttttatatatttattcGGAGAGTTGAAAATATGGCAAGGACTGTC
CTGAATAGCAATTTAATCCTAAACTATAAAGGAGAAGATTTGAGAGAGGT
GTTACTTGAGAAGCTCAATCAAAACGAATTGGTGGATTTAGGCTGGATAG
CATTGACTAAGTCTATACAATGTGATGGAATGAAAAAAGCTCTCAAGAAC
ATTATTTTGAGAAAGTGGGTTTCACTCAGAGCCAAGTCATTTCTAAACTG
CTGGATCCGAATGTTAAAgaggaaaaaacaaaatatttcagaaaagaGTG
AGCCCTCTATGAGAAAGTCTTTACATGGAAAAGGGAAAAGTGGTGATAAA
TCTGAACAGGATAAGGCAGAAagtaacaagtgatacttttatggacctac
ctggtccaacccaccggggtaggtccataaactaattttttgaatttatt
ttgaatCAAATATTTACCACtttattaatatttttgtcaaatgattTTAC
TTCTGATAGATATCTAACCAAGGTCGAGAAAAAATGATAAAGAAGAAAGA
GT Run BLAST on NCBI protein sequence of TCONS_00058419-protein >TCONS_00058419-protein ID=TCONS_00058419-protein|Name=TCONS_00058419-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
SMEDREKNEINLLLENIDDEIEVIIEDHNKLIGLSAEELEEIFSEEFDLE
EIPSLQDHEENKTPPQTTTTEVEPEAPVTKKHKTKSPPKFVCDKCKLKYV
RQSAYEKHLSKCLSEGVLVIEKELLSNVLMEEYNKEGPTMLTKSFEMVKG
NKVFMIQRESRETLGNKALKLATTILTKKETTDFKDFASMLSKFCIGLLQ
LKTNKAAARETISTTLHRTCKNESFKNAMSKLAVNVDEEVSLFLLNNIFK
SFFQLSLTWRNDKLLTRNFNEIDVKLSSQEQKTLRYVAGFIPFSLSKRFK
NRQDTDMGKVVVETIETWRANPNENKKSFLEFSKSWTERVNRGGLFQVND
DFYIFIRRVENMARTVLNSNLILNYKGEDLREVLLEKLNQNELVDLGWIA
LTKSIQCDGMKKALKNIILRKWVSLRAKSFLNCWIRMLKRKKQNISEKSE
PSMRKSLHGKGKSGDKSEQDKAESNK Run BLAST on NCBI transcript from alignment at scaffold_311:28157..30020+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058419 ID=TCONS_00058419|Name=TCONS_00058419|organism=Clytia hemisphaerica|type=transcript|length=1864bp|location=Sequence derived from alignment at scaffold_311:28157..30020+ (Clytia hemisphaerica)
CAAGCATGGAAGATagagagaaaaatgaaattaatctGTTGTTGGAAAAT
ATTGATGATGAAATAGAAGTAATTATTGAAGATCACAATAAACTTATTGG
TTTGAGTGCAGAAGAGTTGGAAGAAATATTTTCTGAAGAATTCGACCTTG
AAGAAATACCATCCCTTCAAGATcatgaagaaaacaaaacacCACCACAA
ACTACCACAACAGAAGTAGAGCCTGAGGCCCCAGTTACAAagaaacacaa
aacaaaatcaCCTCCCAAGTTCGTTTGTGATAAATGTAAATTGAAGTATG
TTCGACAATCTGCTTATGAGAAGCACTTATCAAAGTGTCTTTCTGAAGGA
GTTTTGGTTATTGAAAAAGGTAAAGAATTATGCCTGCCCATGGATTCAGA
CTTTGCTATTTTTGTTAtgtgttattcttttacttttttgattttttttt
catggtCCATGATATGATTTTTGCTTGCCTTGCCTTGCCTGCACTCACtg
ttttgtttgtaatttgtACGTACTTTTATAGAAAATTGTTACAATTTAAA
ATGATAAACCAAAAAATATACTGAACTGTAATTCCCATTCGCAGATCTGA
GtaaggaaaaacttttttctttatttctcagaACTATTGTCCAACGTATT
AATGGAAGAGTACAATAAGGAAGGACCAACCATGCTgaccaaaagttttg
aaatggtGAAGGGCAATAAAGTCTTCATGATTCAAAGGGAAAGCAGAGAG
ACTCTTGGAAACAAAGCTCTAAAACTTGCTACAACCATCCTCACAAAAAA
GGAAACCACCGACTTCAAAGATTTTGCCTCAATGTTGTCCAAATTTTGTA
TAGGACTCCTCCAACTGAAGACCAACAAAGCTGCTGCGCGTGAAACCATC
AGTACTACACTTCACCGTACCtgcaaaaatgaaagttttaaaaatgcaat
GTCAAAACTGGCAGTGAATGTTGACGAGGAGGTTTCACTGTTTTTGTTGA
ACAACATTTTTAAGAGTTTTTTCCAGCTTTCCTTGACTTGGAGGAATGAT
AAGTTATTAACGcggaattttaatgaaattgatGTCAAGTTGTCATCACA
AGAGCAGAAAACTCTGCGGTATGTTGCTGGTTTCATACCATTTTCCCTct
caaaaagatttaaaaatagACAAGACACTGATATGGGAAAAGTTGTCGTG
GAAACTATTGAAACGTGGCGTGCTAATcccaatgaaaataaaaaatcttt
tttggaattttcaaaatcctGGACCGAAAGGGTAAACCGTGGTGGATTAT
TCCAAGTTAATGAtgatttttatatatttattcGGAGAGTTGAAAATATG
GCAAGGACTGTCCTGAATAGCAATTTAATCCTAAACTATAAAGGAGAAGA
TTTGAGAGAGGTGTTACTTGAGAAGCTCAATCAAAACGAATTGGTGGATT
TAGGCTGGATAGCATTGACTAAGTCTATACAATGTGATGGAATGAAAAAA
GCTCTCAAGAACATTATTTTGAGAAAGTGGGTTTCACTCAGAGCCAAGTC
ATTTCTAAACTGCTGGATCCGAATGTTAAAgaggaaaaaacaaaatattt
cagaaaagaGTGAGCCCTCTATGAGAAAGTCTTTACATGGAAAAGGGAAA
AGTGGTGATAAATCTGAACAGGATAAGGCAGAAagtaacaagtgatactt
ttatggacctacctggtccaacccaccggggtaggtccataaactaattt
tttgaatttattttgaatCAAATATTTACCACtttattaatatttttgtc
aaatgattTTACTTCTGATAGATATCTAACCAAGGTCGAGAAAAAATGAT
AAAGAAGAAAGAGT Coding sequence (CDS) from alignment at scaffold_311:28157..30020+ >TCONS_00058419 ID=TCONS_00058419|Name=TCONS_00058419|organism=Clytia hemisphaerica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_311:28157..30020+ (Clytia hemisphaerica)
AGCATGGAAGATagagagaaaaatgaaattaatctGTTGTTGGAAAATAT
TGATGATGAAATAGAAGTAATTATTGAAGATCACAATAAACTTATTGGTT
TGAGTGCAGAAGAGTTGGAAGAAATATTTTCTGAAGAATTCGACCTTGAA
GAAATACCATCCCTTCAAGATcatgaagaaaacaaaacacCACCACAAAC
TACCACAACAGAAGTAGAGCCTGAGGCCCCAGTTACAAagaaacacaaaa
caaaatcaCCTCCCAAGTTCGTTTGTGATAAATGTAAATTGAAGTATGTT
CGACAATCTGCTTATGAGAAGCACTTATCAAAGTGTCTTTCTGAAGGAGT
TTTGGTTATTGAAAAAGaACTATTGTCCAACGTATTAATGGAAGAGTACA
ATAAGGAAGGACCAACCATGCTgaccaaaagttttgaaatggtGAAGGGC
AATAAAGTCTTCATGATTCAAAGGGAAAGCAGAGAGACTCTTGGAAACAA
AGCTCTAAAACTTGCTACAACCATCCTCACAAAAAAGGAAACCACCGACT
TCAAAGATTTTGCCTCAATGTTGTCCAAATTTTGTATAGGACTCCTCCAA
CTGAAGACCAACAAAGCTGCTGCGCGTGAAACCATCAGTACTACACTTCA
CCGTACCtgcaaaaatgaaagttttaaaaatgcaatGTCAAAACTGGCAG
TGAATGTTGACGAGGAGGTTTCACTGTTTTTGTTGAACAACATTTTTAAG
AGTTTTTTCCAGCTTTCCTTGACTTGGAGGAATGATAAGTTATTAACGcg
gaattttaatgaaattgatGTCAAGTTGTCATCACAAGAGCAGAAAACTC
TGCGGTATGTTGCTGGTTTCATACCATTTTCCCTctcaaaaagatttaaa
aatagACAAGACACTGATATGGGAAAAGTTGTCGTGGAAACTATTGAAAC
GTGGCGTGCTAATcccaatgaaaataaaaaatcttttttggaattttcaa
aatcctGGACCGAAAGGGTAAACCGTGGTGGATTATTCCAAGTTAATGAt
gatttttatatatttattcGGAGAGTTGAAAATATGGCAAGGACTGTCCT
GAATAGCAATTTAATCCTAAACTATAAAGGAGAAGATTTGAGAGAGGTGT
TACTTGAGAAGCTCAATCAAAACGAATTGGTGGATTTAGGCTGGATAGCA
TTGACTAAGTCTATACAATGTGATGGAATGAAAAAAGCTCTCAAGAACAT
TATTTTGAGAAAGTGGGTTTCACTCAGAGCCAAGTCATTTCTAAACTGCT
GGATCCGAATGTTAAAgaggaaaaaacaaaatatttcagaaaagaGTGAG
CCCTCTATGAGAAAGTCTTTACATGGAAAAGGGAAAAGTGGTGATAAATC
TGAACAGGATAAGGCAGAAagtaacaagtgaAGCATGGAAGATagagaga
aaaatgaaattaatctGTTGTTGGAAAATATTGATGATGAAATAGAAGTA
ATTATTGAAGATCACAATAAACTTATTGGTTTGAGTGCAGAAGAGTTGGA
AGAAATATTTTCTGAAGAATTCGACCTTGAAGAAATACCATCCCTTCAAG
ATcatgaagaaaacaaaacacCACCACAAACTACCACAACAGAAGTAGAG
CCTGAGGCCCCAGTTACAAagaaacacaaaacaaaatcaCCTCCCAAGTT
CGTTTGTGATAAATGTAAATTGAAGTATGTTCGACAATCTGCTTATGAGA
AGCACTTATCAAAGTGTCTTTCTGAAGGAGTTTTGGTTATTGAAAAAGaA
CTATTGTCCAACGTATTAATGGAAGAGTACAATAAGGAAGGACCAACCAT
GCTgaccaaaagttttgaaatggtGAAGGGCAATAAAGTCTTCATGATTC
AAAGGGAAAGCAGAGAGACTCTTGGAAACAAAGCTCTAAAACTTGCTACA
ACCATCCTCACAAAAAAGGAAACCACCGACTTCAAAGATTTTGCCTCAAT
GTTGTCCAAATTTTGTATAGGACTCCTCCAACTGAAGACCAACAAAGCTG
CTGCGCGTGAAACCATCAGTACTACACTTCACCGTACCtgcaaaaatgaa
agttttaaaaatgcaatGTCAAAACTGGCAGTGAATGTTGACGAGGAGGT
TTCACTGTTTTTGTTGAACAACATTTTTAAGAGTTTTTTCCAGCTTTCCT
TGACTTGGAGGAATGATAAGTTATTAACGcggaattttaatgaaattgat
GTCAAGTTGTCATCACAAGAGCAGAAAACTCTGCGGTATGTTGCTGGTTT
CATACCATTTTCCCTctcaaaaagatttaaaaatagACAAGACACTGATA
TGGGAAAAGTTGTCGTGGAAACTATTGAAACGTGGCGTGCTAATcccaat
gaaaataaaaaatcttttttggaattttcaaaatcctGGACCGAAAGGGT
AAACCGTGGTGGATTATTCCAAGTTAATGAtgatttttatatatttattc
GGAGAGTTGAAAATATGGCAAGGACTGTCCTGAATAGCAATTTAATCCTA
AACTATAAAGGAGAAGATTTGAGAGAGGTGTTACTTGAGAAGCTCAATCA
AAACGAATTGGTGGATTTAGGCTGGATAGCATTGACTAAGTCTATACAAT
GTGATGGAATGAAAAAAGCTCTCAAGAACATTATTTTGAGAAAGTGGGTT
TCACTCAGAGCCAAGTCATTTCTAAACTGCTGGATCCGAATGTTAAAgag
gaaaaaacaaaatatttcagaaaagaGTGAGCCCTCTATGAGAAAGTCTT
TACATGGAAAAGGGAAAAGTGGTGATAAATCTGAACAGGATAAGGCAGAA
agtaacaagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058419-exon-scaffold_311-1491911889:28157..28525 | TCONS_00058419-exon-scaffold_311-1491911889:28157..28525 | Clytia hemisphaerica | exon |
| TCONS_00058419-exon-scaffold_311-1510915933:28157..28525 | TCONS_00058419-exon-scaffold_311-1510915933:28157..28525 | Clytia hemisphaerica | exon |
| TCONS_00058419-exon-scaffold_311-1575043694:28157..28525 | TCONS_00058419-exon-scaffold_311-1575043694:28157..28525 | Clytia hemisphaerica | exon |
| TCONS_00058419-exon-scaffold_311-1491911889:28788..30020 | TCONS_00058419-exon-scaffold_311-1491911889:28788..30020 | Clytia hemisphaerica | exon |
| TCONS_00058419-exon-scaffold_311-1510915933:28788..30020 | TCONS_00058419-exon-scaffold_311-1510915933:28788..30020 | Clytia hemisphaerica | exon |
| TCONS_00058419-exon-scaffold_311-1575043694:28788..30020 | TCONS_00058419-exon-scaffold_311-1575043694:28788..30020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_311 | supercontig | scaffold_311:28157..30020 + |
Blast
The following BLAST results are available for this feature:
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