TCONS_00058411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058411
Unique NameTCONS_00058411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length302

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058411 ID=TCONS_00058411|Name=TCONS_00058411|organism=Clytia hemisphaerica|type=transcript|length=302bp
CCGccatatttttttgtattaacTTTAATTGTGTTATAACCACCGTTTGG
TATACCAAAGCATAAACATTTCGATGCAATTTCAACTGCTTGTCTTTGTA
CAGTGAAATGTCTGACTTTCTGTTGCTTTTGACTTCTGCGTTTTAAGACA
ACAATACCTACCTGCTCAGGAAGGTTAGGTAACTGGGTGGCTATTGACAT
CCTCTGAGGGATGCTTATAGAATGGCCCTTAGATGACATCATACCATACC
TCAGCATGTGAACACGCATACAGACAGTTATTTTAGATATGAGTGCCAAT
TC
Run BLAST on NCBI

protein sequence of TCONS_00058411-protein

>TCONS_00058411-protein ID=TCONS_00058411-protein|Name=TCONS_00058411-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
ELALISKITVCMRVHMLRYGMMSSKGHSISIPQRMSIATQLPNLPEQVGI
VVLKRRSQKQQKVRHFTVQRQAVEIASKCLCFGIPNGGYNTIKVNTKKYG
Run BLAST on NCBI

transcript from alignment at scaffold_310:142520..142821

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058411 ID=TCONS_00058411|Name=TCONS_00058411|organism=Clytia hemisphaerica|type=transcript|length=302bp|location=Sequence derived from alignment at scaffold_310:142520..142821 (Clytia hemisphaerica)
GAATTGGCACTCATATCTAAAATAACTGTCTGTATGCGTGTTCACATGCT
GAGGTATGGTATGATGTCATCTAAGGGCCATTCTATAAGCATCCCTCAGA
GGATGTCAATAGCCACCCAGTTACCTAACCTTCCTGAGCAGGTAGGTATT
GTTGTCTTAAAACGCAGAAGTCAAAAGCAACAGAAAGTCAGACATTTCAC
TGTACAAAGACAAGCAGTTGAAATTGCATCGAAATGTTTATGCTTTGGTA
TACCAAACGGTGGTTATAACACAATTAAAgttaatacaaaaaaatatggC
GG

Coding sequence (CDS) from alignment at scaffold_310:142520..142821

>TCONS_00058411 ID=TCONS_00058411|Name=TCONS_00058411|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_310:142520..142821 (Clytia hemisphaerica)
GAATTGGCACTCATATCTAAAATAACTGTCTGTATGCGTGTTCACATGCT
GAGGTATGGTATGATGTCATCTAAGGGCCATTCTATAAGCATCCCTCAGA
GGATGTCAATAGCCACCCAGTTACCTAACCTTCCTGAGCAGGTAGGTATT
GTTGTCTTAAAACGCAGAAGTCAAAAGCAACAGAAAGTCAGACATTTCAC
TGTACAAAGACAAGCAGTTGAAATTGCATCGAAATGTTTATGCTTTGGTA
TACCAAACGGTGGTTATAACACAATTAAAgttaatacaaaaaaatatggC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036799XLOC_036799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058411-exon-scaffold_310-1491911889:142520..142821TCONS_00058411-exon-scaffold_310-1491911889:142520..142821Clytia hemisphaericaexon
TCONS_00058411-exon-scaffold_310-1510915933:142520..142821TCONS_00058411-exon-scaffold_310-1510915933:142520..142821Clytia hemisphaericaexon
TCONS_00058411-exon-scaffold_310-1575043694:142520..142821TCONS_00058411-exon-scaffold_310-1575043694:142520..142821Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058411-proteinTCONS_00058411-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:142520..142821 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05964	0.970878	0	0	1.02776	0.812147	1.46973	3.66918	0.642221	0.397747	0	1.91646	1.18044	0	0.682218	0.242208	0	1.29849	0	1.27164	1.30901	2.40091	1.18213	1.0226	2.45475	3.65134	0	0	0.24887	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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