TCONS_00058409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058409
Unique NameTCONS_00058409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058409 ID=TCONS_00058409|Name=TCONS_00058409|organism=Clytia hemisphaerica|type=transcript|length=844bp
CGGCTTTAAACACAAGCAGTCCTCCCTAGGGGAACCAAAGAGAGTTGAGC
AGAGACATGGCATATCAGTGATCACATCAGTTTTTCGAATAGGAATAGAC
TACAAAACTAAAAGGTGAACACTGTGAAAAGACTAACATAAATGACAATT
AAAACACAAACCTATAAAATGAATATACCTAatcaaatttaattaatttt
ctgACAATGAACGTCTAAAAACAATACATATGTAATAAACCAAAATATAG
GAACTAGCATAAACTCAAACTAGAATATAATGTGAATATGGGACATGTGT
GATAAAGAGGGCTGACAGAGCAAATCATAAAAGCAGCAGTACAGCtaaat
gaagaactgaaaagaAGGCTTTAAATGGGAAATCTGAGCTCATAACAGGG
CAgacacaaatcaaaacaaactgaaaTATCTTAACTCTGATATACCTTTT
ATACATAATATCAGACACTAAATTAATTAATTGAATTTGCAccttcaaaa
caagagcaggacaagaataatttgtggttaaaagagataaaaaataagaa
cagccaggtcacaacaaaaaaattactgtttcaaataaaagagactGTAA
ACTAAGAATCTTAGAAAAATCTCTAAGAATCCTAGAAATTCAGTCTCTCG
CAggatcaattttcaaactttagcTCGGACATACCCATCATCTAGTACCC
CTGGTCCTTGGAAAAATCTCCCAAGCCTGAtatattgtgttttttttctg
gcaGAGCCCAATCATTTATAATATACAGCTTttagagaagaaaaaattat
ctATTTAAAAAGCTCAACCATACAAATTTAGTTATCATCATATA
Run BLAST on NCBI

transcript from alignment at scaffold_310:94452..95295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058409 ID=TCONS_00058409|Name=TCONS_00058409|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at scaffold_310:94452..95295 (Clytia hemisphaerica)
TATATGATGATAACTAAATTTGTATGGTTGAGCTTTTTAAATagataatt
ttttcttctctaaAAGCTGTATATTATAAATGATTGGGCTCtgccagaaa
aaaaacacaatataTCAGGCTTGGGAGATTTTTCCAAGGACCAGGGGTAC
TAGATGATGGGTATGTCCGAgctaaagtttgaaaattgatccTGCGAGAG
ACTGAATTTCTAGGATTCTTAGAGATTTTTCTAAGATTCTTAGTTTACag
tctcttttatttgaaacagtaatttttttgttgtgacctggctgttctta
ttttttatctcttttaaccacaaattattcttgtcctgctcttgttttga
aggTGCAAATTCAATTAATTAATTTAGTGTCTGATATTATGTATAAAAGG
TATATCAGAGTTAAGATAtttcagtttgttttgatttgtgtcTGCCCTGT
TATGAGCTCAGATTTCCCATTTAAAGCCTtcttttcagttcttcatttaG
CTGTACTGCTGCTTTTATGATTTGCTCTGTCAGCCCTCTTTATCACACAT
GTCCCATATTCACATTATATTCTAGTTTGAGTTTATGCTAGTTCCTATAT
TTTGGTTTATTACATATGTATTGTTTTTAGACGTTCATTGTcagaaaatt
aattaaatttgatTAGGTATATTCATTTTATAGGTTTGTGTTTTAATTGT
CATTTATGTTAGTCTTTTCACAGTGTTCACCTTTTAGTTTTGTAGTCTAT
TCCTATTCGAAAAACTGATGTGATCACTGATATGCCATGTCTCTGCTCAA
CTCTCTTTGGTTCCCCTAGGGAGGACTGCTTGTGTTTAAAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036797XLOC_036797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058409-exon-scaffold_310-1491911889:94452..95295TCONS_00058409-exon-scaffold_310-1491911889:94452..95295Clytia hemisphaericaexon
TCONS_00058409-exon-scaffold_310-1510915933:94452..95295TCONS_00058409-exon-scaffold_310-1510915933:94452..95295Clytia hemisphaericaexon
TCONS_00058409-exon-scaffold_310-1575043694:94452..95295TCONS_00058409-exon-scaffold_310-1575043694:94452..95295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:94452..95295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.230664	0.488546	0.253038	0.139266	13.5728	10.2513	8.95079	9.67285	2.18902	4.93636	1.68556	2.20113	0.353953	0.780963	0.692089	0.465788	0.145009	0.53611	0.662484	0.778401	0.9354	1.6397	0.502992	0.736285	0.671558	0.963644	2.37568	2.00275	0.796767	0.609244
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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