TCONS_00058406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058406
Unique NameTCONS_00058406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058406 ID=TCONS_00058406|Name=TCONS_00058406|organism=Clytia hemisphaerica|type=transcript|length=606bp
CCGAGCTGTGAGGACGTGAATTTAGCTGGCCTAAAAAATCTTTATAACTA
TTTATCTTTATATCTACCAATATCTGATAAATCACAACAAATTGAACTTC
TTAACATCTGTCAATATATTCCTACGCATATTTTCTTCAACACCAACACA
TTCAATACACTTTCAACATGTCACAACTCTCCAATTCTCAAGAAACAGAC
TCATCACAAATGTCTCCAGGTGTAGCACCCAAACGAAAACCAATAAACAA
AAGTTTGAACAAAGCCGACCTCATCAAACTGGCGAATGAACTGAATAAGG
AAAACAacgacaaaaacaaagaaattgcttCACTTCACATAGAGTTAGAG
CTCCAAAAGAACGAAAACCAAGGATTGAGAGAAGAGCTAAACGACATTCG
TGGACAActtaatgaaattaaaaacatgATTCAAACACAAAAGAAGCAAG
ATTTTGATGCCAGACTTGTGGAAGTTGAAAGGAGATTGTATTCACAGGAA
CAATACAGTCGCAGAGAGTGTATCGAGTTACATGGGTTTGAAGCAgtcga
aaatgaaaatgtagaAGATGCTGCTATTGCTGTCCTGAATGCCACCGCTG
ATGGTN
Run BLAST on NCBI

protein sequence of TCONS_00058406-protein

>TCONS_00058406-protein ID=TCONS_00058406-protein|Name=TCONS_00058406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MSQLSNSQETDSSQMSPGVAPKRKPINKSLNKADLIKLANELNKENNDKN
KEIASLHIELELQKNENQGLREELNDIRGQLNEIKNMIQTQKKQDFDARL
VEVERRLYSQEQYSRRECIELHGFEAVENENVEDAAIAVLNATADG
Run BLAST on NCBI

transcript from alignment at scaffold_310:41424..42029

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058406 ID=TCONS_00058406|Name=TCONS_00058406|organism=Clytia hemisphaerica|type=transcript|length=606bp|location=Sequence derived from alignment at scaffold_310:41424..42029 (Clytia hemisphaerica)
NACCATCAGCGGTGGCATTCAGGACAGCAATAGCAGCATCTtctacattt
tcattttcgacTGCTTCAAACCCATGTAACTCGATACACTCTCTGCGACT
GTATTGTTCCTGTGAATACAATCTCCTTTCAACTTCCACAAGTCTGGCAT
CAAAATCTTGCTTCTTTTGTGTTTGAATcatgtttttaatttcattaagT
TGTCCACGAATGTCGTTTAGCTCTTCTCTCAATCCTTGGTTTTCGTTCTT
TTGGAGCTCTAACTCTATGTGAAGTGaagcaatttctttgtttttgtcgt
TGTTTTCCTTATTCAGTTCATTCGCCAGTTTGATGAGGTCGGCTTTGTTC
AAACTTTTGTTTATTGGTTTTCGTTTGGGTGCTACACCTGGAGACATTTG
TGATGAGTCTGTTTCTTGAGAATTGGAGAGTTGTGACATGTTGAAAGTGT
ATTGAATGTGTTGGTGTTGAAGAAAATATGCGTAGGAATATATTGACAGA
TGTTAAGAAGTTCAATTTGTTGTGATTTATCAGATATTGGTAGATATAAA
GATAAATAGTTATAAAGATTTTTTAGGCCAGCTAAATTCACGTCCTCACA
GCTCGG

Coding sequence (CDS) from alignment at scaffold_310:41424..42029

>TCONS_00058406 ID=TCONS_00058406|Name=TCONS_00058406|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at scaffold_310:41424..42029 (Clytia hemisphaerica)
ACCATCAGCGGTGGCATTCAGGACAGCAATAGCAGCATCTtctacatttt
cattttcgacTGCTTCAAACCCATGTAACTCGATACACTCTCTGCGACTG
TATTGTTCCTGTGAATACAATCTCCTTTCAACTTCCACAAGTCTGGCATC
AAAATCTTGCTTCTTTTGTGTTTGAATcatgtttttaatttcattaagTT
GTCCACGAATGTCGTTTAGCTCTTCTCTCAATCCTTGGTTTTCGTTCTTT
TGGAGCTCTAACTCTATGTGAAGTGaagcaatttctttgtttttgtcgtT
GTTTTCCTTATTCAGTTCATTCGCCAGTTTGATGAGGTCGGCTTTGTTCA
AACTTTTGTTTATTGGTTTTCGTTTGGGTGCTACACCTGGAGACATTTGT
GATGAGTCTGTTTCTTGAGAATTGGAGAGTTGTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036794XLOC_036794Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058406-proteinTCONS_00058406-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058406-exon-scaffold_310-1491911889:41424..42029TCONS_00058406-exon-scaffold_310-1491911889:41424..42029Clytia hemisphaericaexon
TCONS_00058406-exon-scaffold_310-1510915933:41424..42029TCONS_00058406-exon-scaffold_310-1510915933:41424..42029Clytia hemisphaericaexon
TCONS_00058406-exon-scaffold_310-1575043694:41424..42029TCONS_00058406-exon-scaffold_310-1575043694:41424..42029Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:41424..42029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.69137	0.319458	0.392043	0.815418	6.20296	5.26507	2.07271	4.15766	2.79114	4.17047	3.32956	2.41276	0.541427	0.55767	0.611898	0.410918	0.453144	0.730898	0.167099	0.8456	1.24316	1.25459	0.204927	0.473246	0.664337	0.36051	0.41385	0.74264	0.350384	0.457487
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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