TCONS_00058401 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058401
Unique NameTCONS_00058401
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058401 ID=TCONS_00058401|Name=TCONS_00058401|organism=Clytia hemisphaerica|type=transcript|length=1255bp
ATTTGGAAGGTTGCACCACCAGAAATTTTGGATCTTATCAATTCCTGGGC
TTTTCCAATTGGCGAATTTGTTTGTTGCAGACATGACTTCATCTGGCGTG
ATATCACTGTACTCGGACTGCTCGGCATCTATAGACTCTTCATACTGTTG
GAGCCAGACGGATTCTTTGTTGTAGCACTTCCGTGTTTCGTACATTGGTT
TCCAGAACTGTTCGATCCTTTCTTTCGATGGTGGGTCTTTGACTTCGGTC
TTATTTCCTCGAAGCTCGTCGAACAATTTCGAAGGTTTCTCGATGAAATC
GTTGTTCTGGCGGAATTGTGTTTGGCGTTTTTGGTATCGTGACAGTCTGT
TGTTTAAAGCTAGCATGCGTTGCTTCAAAGTTTCTAATATTACTTCTCTT
TCGTATTCGTCAGTGATGTTGTATTTTTGCCGCATGGCGttgttgttctt
tttcattttcgtaGAGGGATTTGGGTCTCGCATCTGTGATACTCGGCTTA
CGTCTCCTCGGATGTTGTCAATTCTCATTTTCATATTGAACACCCAGTTA
TCTCCCtttcgttgttttttatttgtttttcggtagATACAACATTTCTG
CGCACTGATCTCATTTATAGCTGTGATCGCGGCCGCGTACGTCAGATTGT
TGAGTTGATTGACGTCAGAAATGTCAGTTAGCACTGTAGCGTCTTCGAga
actttgtttacttttcccAAAGATTTTTCCAATGTTTTTAGGGTCTTTTT
GTTaggttttttgaaattataccTTTCTTCAAAGGGTGTGACGATACTAT
ACGCATAGTTTTCGAGTAGTCTTTCCTTTAGTTGTAGGAGTTCGTCTTCC
TCTGGTTGATTTTCGTCCAGAATCTCGATATTTTCCGGTTCTTCTTCGGG
TTGTCGAGGCGGTTCGTTTTCAGGTGGTTGTTCGTGTTCTGGACCGGTTT
CTGCCTCTGGTTGTTCGGTTAGTTGGTTTCGTGGCTGGTTTCTTTCGTTG
TCGATCTCATCTTGAATCTCATTTCGAATTTGTTGGATTTCCAGCTCGGT
TAACCAGCTTCCTCGTGTATTTTCTCTGGTGTTGACCTTCTTTGTGATGA
CTTGTTTCCGGTCACAAATCTTTTGTTCTTTGCTGTAGGTGTTGTTGGTT
GTTTCTTAGTTCATTTTGTTGAAGAATCACGTTGCGTTCGTGACTTTCAA
GAAAACTTTCGTTCATTTTCGTCAGAGCACAAATAGACACGTCTGCACTC
TTTCG
Run BLAST on NCBI

transcript from alignment at scaffold_310:208716..210182+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058401 ID=TCONS_00058401|Name=TCONS_00058401|organism=Clytia hemisphaerica|type=transcript|length=1467bp|location=Sequence derived from alignment at scaffold_310:208716..210182+ (Clytia hemisphaerica)
ATTTGGAAGGTTGCACCACCAGAAATTTTGGATCTTATCAATTCCTGGGC
TTTTCCAATTGGCGAATTTGTTTGTTGCAGACATGACTTCATCTGGCGTG
ATATCACTGTACTCGGACTGCTCGGCATCTATAGACTCTTCATACTGTTG
GAGCCAGACGGATTCTTTGTTGTAGCACTTCCGTGTTTCGTACATTGGTT
TCCAGAACTGTTCGATCCTTTCTTTCGATGGTGGGTCTTTGACTTCGGTC
TTATTTCCTCGAAGCTCGTCGAACAATTTCGAAGGTTTCTCGATGAAATC
GTTGTTCTGGCGGAATTGTGTTTGGCGTTTTTGGTATCGTGACAGTCTGT
TGTTTAAAGCTAGCATGCGTTGCTTCAAAGTTTCTAATATTACTTCTCTT
TCGTATTCGTCAGTGATGTTGTATTTTTGCCGCATGGCGttgttgttctt
tttcattttcgtaGAGGGATTTGGGTCTCGCATCTGTGATACTCGGCTTA
CGTCTCCTCGGATGTTGTCAATTCTCATTTTCATATTGAACACCCAGTTA
TCTCCCtttcgttgttttttatttgtttttcggtagATACAACATTTCTG
CGCACTGATCTCATTTATAGCTGTGATCGCGGCCGCGTACGTCAGATTGT
TGAGTTGATTGACGTCAGAAATGTCAGTTAGCACTGTAGCGTCTTCGAga
actttgtttacttttcccAAAGATTTTTCCAATGTTTTTAGGGTCTTTTT
GTTaggttttttgaaattataccTTTCTTCAAAGGGTGTGACGATACTAT
ACGCATAGTTTTCGAGTAGTCTTTCCTTTAGTTGTAGGAGTTCGTCTTCC
TCTGGTTGATTTTCGTCCAGAATCTCGATATTTTCCGGTTCTTCTTCGGG
TTGTCGAGGCGGTTCGTTTTCAGGTGGTTGTTCGTGTTCTGGACCGGTTT
CTGCCTCTGGTTGTTCGGTTAGTTGGTTTCGTGGCTGGTTTCTTTCGTTG
TCGATCTCATCTTGAATCTCATTTCGAATTTGTTGGATTTCCAGCTCGGT
TAACCAGCTTCCTCGTGTATTTTCTCTGGTGTTGACCTTCTTTGTGATGA
CTTGTTTCCGGTCACAAATCTTTTGTTCTGTACACCGGATTTCGGGGTGA
AGGGCTTCCCATCTACGGTGGAACTCCTTTCGGTAAGGAGCGTCAGGGTA
GCGCAGAATTGTGTTGAAGAAGCAACGGATAACATCTGAGTTTAGGTTTT
TCGTCCATTTCATCCGTACCTCTCTTTGATGGTTTTGCGTGTTGTTTTCT
TCTGAAATAACAGCAGGCTCGTCATCTCGGTTGTTCTGCAGTTGCTGTAG
GTGTTGTTGGTTGTTTCTTAGTTCATTTTGTTGAAGAATCACGTTGCGTT
CGTGACTTTCAAGAAAACTTTCGTTCATTTTCGTCAGAGCACAAATAGAC
ACGTCTGCACTCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036789XLOC_036789Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058401-exon-scaffold_310-1491911889:208716..209844TCONS_00058401-exon-scaffold_310-1491911889:208716..209844Clytia hemisphaericaexon
TCONS_00058401-exon-scaffold_310-1510915933:208716..209844TCONS_00058401-exon-scaffold_310-1510915933:208716..209844Clytia hemisphaericaexon
TCONS_00058401-exon-scaffold_310-1575043694:208716..209844TCONS_00058401-exon-scaffold_310-1575043694:208716..209844Clytia hemisphaericaexon
TCONS_00058401-exon-scaffold_310-1491911889:210057..210182TCONS_00058401-exon-scaffold_310-1491911889:210057..210182Clytia hemisphaericaexon
TCONS_00058401-exon-scaffold_310-1510915933:210057..210182TCONS_00058401-exon-scaffold_310-1510915933:210057..210182Clytia hemisphaericaexon
TCONS_00058401-exon-scaffold_310-1575043694:210057..210182TCONS_00058401-exon-scaffold_310-1575043694:210057..210182Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:208716..210182 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00452259	0	0.212736	0.338144	0.0985421	0.108432	0.0436063	0	0	0.177015	0.171815	0.0225889	0.164122	0.327966	0.115557	0.00957442	0.0509235	0	0.14422	0	0	0	0.0777784	0	0	0	0	0	0	0.00592301
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058401 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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