TCONS_00058398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058398
Unique NameTCONS_00058398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058398 ID=TCONS_00058398|Name=TCONS_00058398|organism=Clytia hemisphaerica|type=transcript|length=456bp
GTCAAGGAAATGAGCTGAAATTGAAATCACTCTGGCTCCAGGCTCTCCAT
CATATTTGTAATGACCACCAGAACTGTGATTATGGAGAGGTTGAACTGGA
AGATGGGAAGCAGTGGTTGGATCCCTCCAGTGAAGCCATGAAAGCATTAC
GCAAAAAGCTCTTTGGGGCAAAATGGCTCAAAAGCATGAACTATTATGTA
CGAAATCGACATACTGGTACTTTGGAGAATTACCATAACCTTAAGTTGGT
GTATACACCGAAGAGGATTGGATACAAAAACGAGTCATATATTTCTCGGG
GACAACTTACTGTGTTGGACCACAATCGACATCTCAACAGGCCCCAACTT
AAACGCAAGGATGGAACACCGGTCTTCTCCAGCAGTTTTGGTAAACGCTC
AAAACAGTGGTATGTGGTTCCAGTTCCTGTCCCAAAGACATATTCTTACA
TACCAG
Run BLAST on NCBI

protein sequence of TCONS_00058398-protein

>TCONS_00058398-protein ID=TCONS_00058398-protein|Name=TCONS_00058398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
QGNELKLKSLWLQALHHICNDHQNCDYGEVELEDGKQWLDPSSEAMKALR
KKLFGAKWLKSMNYYVRNRHTGTLENYHNLKLVYTPKRIGYKNESYISRG
QLTVLDHNRHLNRPQLKRKDGTPVFSSSFGKRSKQWYVVPVPVPKTYSYI
P
Run BLAST on NCBI

transcript from alignment at scaffold_310:196453..197134+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058398 ID=TCONS_00058398|Name=TCONS_00058398|organism=Clytia hemisphaerica|type=transcript|length=682bp|location=Sequence derived from alignment at scaffold_310:196453..197134+ (Clytia hemisphaerica)
GTCAAGGAAATGAGCTGAAATTGAAATCACTCTGGCTCCAGGCTCTCCAT
CATATTTGTAATGACCACCAGAACTGTGATTATGGAGAGGTTGAACTGGA
AGATGGGAAGCAGTGGTTGGATCCCTCCAGTGAAGCCATGAAAGCATTAC
GCAAAAAGCTCTTTGGGGCAAAATGGCTCAAAAGCATGAACTATTATGTA
CGAAATCGACATACTGGTACTTTGGAGGTAAGTCaagttgaatttcattt
tttatttatttaatatctgaaaataatatataatgaaATATTATAGTTGC
AGATGCAGTTAACACAATTTTGGGAAAAAGACTAAGTGTTTGTTTTTACC
TATGACACAATATTCCTTAATTTTGTGTCACATTCAAAATTATCACTTGc
agttaaaattgaaaatattcgTACGAATAAGACTCGTTATACTTTACATT
TAGAATTACCATAACCTTAAGTTGGTGTATACACCGAAGAGGATTGGATA
CAAAAACGAGTCATATATTTCTCGGGGACAACTTACTGTGTTGGACCACA
ATCGACATCTCAACAGGCCCCAACTTAAACGCAAGGATGGAACACCGGTC
TTCTCCAGCAGTTTTGGTAAACGCTCAAAACAGTGGTATGTGGTTCCAGT
TCCTGTCCCAAAGACATATTCTTACATACCAG

Coding sequence (CDS) from alignment at scaffold_310:196453..197134+

>TCONS_00058398 ID=TCONS_00058398|Name=TCONS_00058398|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_310:196453..197134+ (Clytia hemisphaerica)
CAAGGAAATGAGCTGAAATTGAAATCACTCTGGCTCCAGGCTCTCCATCA
TATTTGTAATGACCACCAGAACTGTGATTATGGAGAGGTTGAACTGGAAG
ATGGGAAGCAGTGGTTGGATCCCTCCAGTGAAGCCATGAAAGCATTACGC
AAAAAGCTCTTTGGGGCAAAATGGCTCAAAAGCATGAACTATTATGTACG
AAATCGACATACTGGTACTTTGGAGAATTACCATAACCTTAAGTTGGTGT
ATACACCGAAGAGGATTGGATACAAAAACGAGTCATATATTTCTCGGGGA
CAACTTACTGTGTTGGACCACAATCGACATCTCAACAGGCCCCAACTTAA
ACGCAAGGATGGAACACCGGTCTTCTCCAGCAGTTTTGGTAAACGCTCAA
AACAGTGGTATGTGGTTCCAGTTCCTGTCCCAAAGACATATTCTTACATA
CCACAAGGAAATGAGCTGAAATTGAAATCACTCTGGCTCCAGGCTCTCCA
TCATATTTGTAATGACCACCAGAACTGTGATTATGGAGAGGTTGAACTGG
AAGATGGGAAGCAGTGGTTGGATCCCTCCAGTGAAGCCATGAAAGCATTA
CGCAAAAAGCTCTTTGGGGCAAAATGGCTCAAAAGCATGAACTATTATGT
ACGAAATCGACATACTGGTACTTTGGAGAATTACCATAACCTTAAGTTGG
TGTATACACCGAAGAGGATTGGATACAAAAACGAGTCATATATTTCTCGG
GGACAACTTACTGTGTTGGACCACAATCGACATCTCAACAGGCCCCAACT
TAAACGCAAGGATGGAACACCGGTCTTCTCCAGCAGTTTTGGTAAACGCT
CAAAACAGTGGTATGTGGTTCCAGTTCCTGTCCCAAAGACATATTCTTAC
ATACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036787XLOC_036787Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058398-proteinTCONS_00058398-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058398-exon-scaffold_310-1491911889:196453..196679TCONS_00058398-exon-scaffold_310-1491911889:196453..196679Clytia hemisphaericaexon
TCONS_00058398-exon-scaffold_310-1510915933:196453..196679TCONS_00058398-exon-scaffold_310-1510915933:196453..196679Clytia hemisphaericaexon
TCONS_00058398-exon-scaffold_310-1575043694:196453..196679TCONS_00058398-exon-scaffold_310-1575043694:196453..196679Clytia hemisphaericaexon
TCONS_00058398-exon-scaffold_310-1491911889:196906..197134TCONS_00058398-exon-scaffold_310-1491911889:196906..197134Clytia hemisphaericaexon
TCONS_00058398-exon-scaffold_310-1510915933:196906..197134TCONS_00058398-exon-scaffold_310-1510915933:196906..197134Clytia hemisphaericaexon
TCONS_00058398-exon-scaffold_310-1575043694:196906..197134TCONS_00058398-exon-scaffold_310-1575043694:196906..197134Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_310supercontigscaffold_310:196453..197134 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287269	0.840398	0	0.318217	0	0	0	0	0.121038	0	0	0.28698	0.382107	0.198411	1.71277	2.10064	3.3426	0.663109	1.67955	0.639103	0.277748	1.01607	1.15282	0.748629	0.154214	0	0.196952	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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