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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058390 ID=TCONS_00058390|Name=TCONS_00058390|organism=Clytia hemisphaerica|type=transcript|length=1394bp
NCAAAGTTTATACTGTAGTTCTATCGCTATTTAGCCAAGGAAATTTACAA
ACTAGAATAATCTTCAGATGGACCTGCATGCACAACCAGAACAAATTTTG
CCTGCTTCTTGGGCTACCATCTTTAACCATTTCGGAACAAACCATCAGGG
CGTACGTAAGGCGGTAATAGGGCGTGCTTTGCTTGTACTGCCGGCAATTG
CCTTGGGCAGAGTGTTTGGGCTAGTACGGGATTCCGATTCGAAAAATGAC
TCAGAATAATGACCATTCTTGCGGAGAAATCGAACGTATATGCATACACA
GATCAATGTTTTGCTTGCATCTCCGAAATCCAACGTTTCGATGTCAAGCG
ATACAGCATCGATAGGCACGATGGCACgtttgaatttgatgtttccaaGT
TCTTGTATCATCTCGAAATGTGATATCCAAATTGGTCGTAGGCTATCTGG
TATGGTATCTCCCCAAGTCAATTGAAGATTGGATAACTCTCGTAGATCGA
GTTTCATAGCAGCGATAAGTGGTGATAGCTTGCCAGTAATGTCGAAAACT
TCAGCCACCTTTGATGCACAGTGGCGACGTGTGAGTAATTCTGGGATGAT
ATTGGTTGCAGCTGAACATTTCTTTCCTCTTCTCTTTGGTGAGAAGTTCA
GTTCTGAGATTGAGATCGAAACTTCATCAGACTTTGAGTACCATTTCATA
CCACCGACTGCCACTGATACTCCATCGTCAGTAAGGTGTGATGGTGGATC
TGCACCTGATAGGGTGATTCCTTTAAGCTTGAAGCCTCCTTTGGATGTGA
TAACTTCTAGCTCGTCTGCTCGTTTGCATGCTTCCTCTGTGTTGATGTCG
CCAGAAATACTGTCGTCGACGTACACATCCTCCTGAAGAATTCGATTGAC
AGCTGGATATTGATCTTTGAAGGTTTCGGAAACTTGACGCAATCCACGTT
CAGCCTGGTTACCGCTGGAACGTATTCCGTAGATCAGTGTCTTGATTATT
TTCTCTCTGGGAATCATTGATGGATTGAGTTCATCTTGCCATATGTAGCG
TTGCAACGTCCAATGCGTTGGGTCGAGCTTAATAGTGTTGTACATTTTAC
TGACGTCACTGTGTAAACCAATTTCATGGATGGACCATCTGATCATCATA
TCCTGAAGTTTGTTCAAATTGTTTGTTCCCTTGGCTAGCAAATCGTTGAG
ACTGAATCCTGATTGGGTTGGTTGTGACGCATCAAAAACAATGCGACATG
GAGTGCTGAGTGATGATAACTTCCACACTGCTCGCCAGGGTATGAAGTTT
TGGACGGTACTGGATTTGAGCATCTGTTGTTGGTCAGCTGGTAGATTATG
AACATAATCAACAAAACCAAGATCTTGAAGTTTCTTCTCTGACG Run BLAST on NCBI protein sequence of TCONS_00058390-protein >TCONS_00058390-protein ID=TCONS_00058390-protein|Name=TCONS_00058390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
SEKKLQDLGFVDYVHNLPADQQQMLKSSTVQNFIPWRAVWKLSSLSTPCR
IVFDASQPTQSGFSLNDLLAKGTNNLNKLQDMMIRWSIHEIGLHSDVSKM
YNTIKLDPTHWTLQRYIWQDELNPSMIPREKIIKTLIYGIRSSGNQAERG
LRQVSETFKDQYPAVNRILQEDVYVDDSISGDINTEEACKRADELEVITS
KGGFKLKGITLSGADPPSHLTDDGVSVAVGGMKWYSKSDEVSISISELNF
SPKRRGKKCSAATNIIPELLTRRHCASKVAEVFDITGKLSPLIAAMKLDL
RELSNLQLTWGDTIPDSLRPIWISHFEMIQELGNIKFKRAIVPIDAVSLD
IETLDFGDASKTLICVCIYVRFLRKNGHYSESFFESESRTSPNTLPKAIA
GSTSKARPITALRTP Run BLAST on NCBI transcript from alignment at scaffold_31:53923..55316 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058390 ID=TCONS_00058390|Name=TCONS_00058390|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at scaffold_31:53923..55316 (Clytia hemisphaerica)
CGTCAGAGAAGAAACTTCAAGATCTTGGTTTTGTTGATTATGTTCATAAT
CTACCAGCTGACCAACAACAGATGCTCAAATCCAGTACCGTCCAAAACTT
CATACCCTGGCGAGCAGTGTGGAAGTTATCATCACTCAGCACTCCATGTC
GCATTGTTTTTGATGCGTCACAACCAACCCAATCAGGATTCAGTCTCAAC
GATTTGCTAGCCAAGGGAACAAACAATTTGAACAAACTTCAGGATATGAT
GATCAGATGGTCCATCCATGAAATTGGTTTACACAGTGACGTCAGTAAAA
TGTACAACACTATTAAGCTCGACCCAACGCATTGGACGTTGCAACGCTAC
ATATGGCAAGATGAACTCAATCCATCAATGATTCCCAGAGAGAAAATAAT
CAAGACACTGATCTACGGAATACGTTCCAGCGGTAACCAGGCTGAACGTG
GATTGCGTCAAGTTTCCGAAACCTTCAAAGATCAATATCCAGCTGTCAAT
CGAATTCTTCAGGAGGATGTGTACGTCGACGACAGTATTTCTGGCGACAT
CAACACAGAGGAAGCATGCAAACGAGCAGACGAGCTAGAAGTTATCACAT
CCAAAGGAGGCTTCAAGCTTAAAGGAATCACCCTATCAGGTGCAGATCCA
CCATCACACCTTACTGACGATGGAGTATCAGTGGCAGTCGGTGGTATGAA
ATGGTACTCAAAGTCTGATGAAGTTTCGATCTCAATCTCAGAACTGAACT
TCTCACCAAAGAGAAGAGGAAAGAAATGTTCAGCTGCAACCAATATCATC
CCAGAATTACTCACACGTCGCCACTGTGCATCAAAGGTGGCTGAAGTTTT
CGACATTACTGGCAAGCTATCACCACTTATCGCTGCTATGAAACTCGATC
TACGAGAGTTATCCAATCTTCAATTGACTTGGGGAGATACCATACCAGAT
AGCCTACGACCAATTTGGATATCACATTTCGAGATGATACAAGAACttgg
aaacatcaaattcaaacGTGCCATCGTGCCTATCGATGCTGTATCGCTTG
ACATCGAAACGTTGGATTTCGGAGATGCAAGCAAAACATTGATCTGTGTA
TGCATATACGTTCGATTTCTCCGCAAGAATGGTCATTATTCTGAGTCATT
TTTCGAATCGGAATCCCGTACTAGCCCAAACACTCTGCCCAAGGCAATTG
CCGGCAGTACAAGCAAAGCACGCCCTATTACCGCCTTACGTACGCCCTGA
TGGTTTGTTCCGAAATGGTTAAAGATGGTAGCCCAAGAAGCAGGCAAAAT
TTGTTCTGGTTGTGCATGCAGGTCCATCTGAAGATTATTCTAGTTTGTAA
ATTTCCTTGGCTAAATAGCGATAGAACTACAGTATAAACTTTGN Coding sequence (CDS) from alignment at scaffold_31:53923..55316 >TCONS_00058390 ID=TCONS_00058390|Name=TCONS_00058390|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_31:53923..55316 (Clytia hemisphaerica)
TCAGAGAAGAAACTTCAAGATCTTGGTTTTGTTGATTATGTTCATAATCT
ACCAGCTGACCAACAACAGATGCTCAAATCCAGTACCGTCCAAAACTTCA
TACCCTGGCGAGCAGTGTGGAAGTTATCATCACTCAGCACTCCATGTCGC
ATTGTTTTTGATGCGTCACAACCAACCCAATCAGGATTCAGTCTCAACGA
TTTGCTAGCCAAGGGAACAAACAATTTGAACAAACTTCAGGATATGATGA
TCAGATGGTCCATCCATGAAATTGGTTTACACAGTGACGTCAGTAAAATG
TACAACACTATTAAGCTCGACCCAACGCATTGGACGTTGCAACGCTACAT
ATGGCAAGATGAACTCAATCCATCAATGATTCCCAGAGAGAAAATAATCA
AGACACTGATCTACGGAATACGTTCCAGCGGTAACCAGGCTGAACGTGGA
TTGCGTCAAGTTTCCGAAACCTTCAAAGATCAATATCCAGCTGTCAATCG
AATTCTTCAGGAGGATGTGTACGTCGACGACAGTATTTCTGGCGACATCA
ACACAGAGGAAGCATGCAAACGAGCAGACGAGCTAGAAGTTATCACATCC
AAAGGAGGCTTCAAGCTTAAAGGAATCACCCTATCAGGTGCAGATCCACC
ATCACACCTTACTGACGATGGAGTATCAGTGGCAGTCGGTGGTATGAAAT
GGTACTCAAAGTCTGATGAAGTTTCGATCTCAATCTCAGAACTGAACTTC
TCACCAAAGAGAAGAGGAAAGAAATGTTCAGCTGCAACCAATATCATCCC
AGAATTACTCACACGTCGCCACTGTGCATCAAAGGTGGCTGAAGTTTTCG
ACATTACTGGCAAGCTATCACCACTTATCGCTGCTATGAAACTCGATCTA
CGAGAGTTATCCAATCTTCAATTGACTTGGGGAGATACCATACCAGATAG
CCTACGACCAATTTGGATATCACATTTCGAGATGATACAAGAACttggaa
acatcaaattcaaacGTGCCATCGTGCCTATCGATGCTGTATCGCTTGAC
ATCGAAACGTTGGATTTCGGAGATGCAAGCAAAACATTGATCTGTGTATG
CATATACGTTCGATTTCTCCGCAAGAATGGTCATTATTCTGAGTCATTTT
TCGAATCGGAATCCCGTACTAGCCCAAACACTCTGCCCAAGGCAATTGCC
GGCAGTACAAGCAAAGCACGCCCTATTACCGCCTTACGTACGCCCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058390-exon-scaffold_31-1491911889:53923..55316 | TCONS_00058390-exon-scaffold_31-1491911889:53923..55316 | Clytia hemisphaerica | exon |
| TCONS_00058390-exon-scaffold_31-1510915933:53923..55316 | TCONS_00058390-exon-scaffold_31-1510915933:53923..55316 | Clytia hemisphaerica | exon |
| TCONS_00058390-exon-scaffold_31-1575043694:53923..55316 | TCONS_00058390-exon-scaffold_31-1575043694:53923..55316 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_31 | supercontig | scaffold_31:53923..55316 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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