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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058346 ID=TCONS_00058346|Name=TCONS_00058346|organism=Clytia hemisphaerica|type=transcript|length=1345bp
CGGCTTTCACAAAACAGCGATACAAAATCCCGCTAGAAGAAAAATGAATC
TGATTTAATTTAACATGAACAAGTAAGCAATCAAACATGACAGGGTGACT
TGGCGCcctgaaatttctaaaaatgaaagcCAAATTCATTATTTGTTTTA
TTCATTTAAAATTGAGtaatatcaaaaatatgatAGAAAAAATACCACCA
CATGAGTTTCAATTCACATTTCTCCAGTTTCATATAATGAGAGGTTTTAA
GACAAGTTGGCGAACTGTTGTTGTAGAGATCGTTCTTGTTCTTGCATCTC
ATTGAGAACAGATTGGAAACGTTGTTTTAAGAACGGGTTCGCTGCATTAC
CAACACGCGTCTCCTGTTCGTGAATTTTCCCTTGAATGTCTCTTAACTGT
TGTTGTATTTGCGCTCGCTGTTCGATCAAATTCTCTAAGCCCCCATCCAC
ACCATCCCCACCATCACCTTCATCTTCACTACTCGAGATGTCCGGAAGAA
TATTAATGCCCCCACCCTCACCTTCGCCAACGGGCGTCACTGCTTCGGGC
GGTTGCTCACTATCCGAAGCATCCATCATGATACTTGACATGTTCGAATT
CTCATCAAAATGATCGATAGACGGACCTCCAACATCAACGTCGACGTCAA
TATCCTCCGTCAGTTCTTCAGGTTTCGCTTTCTCCTGATCATCAATGACG
TCAAAAGAGACGTTAACGGCGCTTACGTCCGCACGTAATAAACGTTTTAC
TTCTTTCTCAATCTCCGGCGCATCTACGTATTTCTGTTTGGCCGTCTTTC
GAAAACGTCTCTTTCGTACATTTTTCAACGGCGCCGTGATGCCGTGtgga
tattgatattttttaacgTCATTTAGACGTTTTTTGAAGTAATCGAAAGT
actattttcttcttcgtcagaACTAAACGACGGTTCTTCAGGGTCCCTAC
AAACCAACATTTGACAAACGTCGCCTGTTTTCCACATGCTTTTTTTGTCA
AACGTTTTCCAAGATTCAATAATACATGGTAGATCCAGCAAAGTTGCTGA
AAAAGTCACTCCATCGAACACCACTCTAGCTTTGCGACCATCCTCTTTAA
ATTCCACTTGTAGACGGTCTTTCAATCCACCGTTCTCCAACGCTTCTTGA
AGATTAGAAGCAAATGGTTCGGGCATTCGAAGTAAGAAATTATTCTCTAA
TTCGACTAATCGAGGTACAGAATACTTTCCATCTTTCTTTGAAGATTTAT
CTCTCTTGTTTTTGTCTTTGCTGGCTTTTTCTTTACCCTTTCCACGAGAT
TTGGctgacattttcttttttttatctgaattttttataatctgt Run BLAST on NCBI protein sequence of TCONS_00058346-protein >TCONS_00058346-protein ID=TCONS_00058346-protein|Name=TCONS_00058346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
QIIKNSDKKKKMSAKSRGKGKEKASKDKNKRDKSSKKDGKYSVPRLVELE
NNFLLRMPEPFASNLQEALENGGLKDRLQVEFKEDGRKARVVFDGVTFSA
TLLDLPCIIESWKTFDKKSMWKTGDVCQMLVCRDPEEPSFSSDEEENSTF
DYFKKRLNDVKKYQYPHGITAPLKNVRKRRFRKTAKQKYVDAPEIEKEVK
RLLRADVSAVNVSFDVIDDQEKAKPEELTEDIDVDVDVGGPSIDHFDENS
NMSSIMMDASDSEQPPEAVTPVGEGEGGGINILPDISSSEDEGDGGDGVD
GGLENLIEQRAQIQQQLRDIQGKIHEQETRVGNAANPFLKQRFQSVLNEM
QEQERSLQQQFANLS Run BLAST on NCBI transcript from alignment at scaffold_309:582449..583793 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058346 ID=TCONS_00058346|Name=TCONS_00058346|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at scaffold_309:582449..583793 (Clytia hemisphaerica)
acagattataaaaaattcagataaaaaaaagaaaatgtcagCCAAATCTC
GTGGAAAGGGTAAAGAAAAAGCCAGCAAAGACAAAAACAAGAGAGATAAA
TCTTCAAAGAAAGATGGAAAGTATTCTGTACCTCGATTAGTCGAATTAGA
GAATAATTTCTTACTTCGAATGCCCGAACCATTTGCTTCTAATCTTCAAG
AAGCGTTGGAGAACGGTGGATTGAAAGACCGTCTACAAGTGGAATTTAAA
GAGGATGGTCGCAAAGCTAGAGTGGTGTTCGATGGAGTGACTTTTTCAGC
AACTTTGCTGGATCTACCATGTATTATTGAATCTTGGAAAACGTTTGACA
AAAAAAGCATGTGGAAAACAGGCGACGTTTGTCAAATGTTGGTTTGTAGG
GACCCTGAAGAACCGTCGTTTAGTtctgacgaagaagaaaatagtACTTT
CGATTACTTCAAAAAACGTCTAAATGAcgttaaaaaatatcaatatccaC
ACGGCATCACGGCGCCGTTGAAAAATGTACGAAAGAGACGTTTTCGAAAG
ACGGCCAAACAGAAATACGTAGATGCGCCGGAGATTGAGAAAGAAGTAAA
ACGTTTATTACGTGCGGACGTAAGCGCCGTTAACGTCTCTTTTGACGTCA
TTGATGATCAGGAGAAAGCGAAACCTGAAGAACTGACGGAGGATATTGAC
GTCGACGTTGATGTTGGAGGTCCGTCTATCGATCATTTTGATGAGAATTC
GAACATGTCAAGTATCATGATGGATGCTTCGGATAGTGAGCAACCGCCCG
AAGCAGTGACGCCCGTTGGCGAAGGTGAGGGTGGGGGCATTAATATTCTT
CCGGACATCTCGAGTAGTGAAGATGAAGGTGATGGTGGGGATGGTGTGGA
TGGGGGCTTAGAGAATTTGATCGAACAGCGAGCGCAAATACAACAACAGT
TAAGAGACATTCAAGGGAAAATTCACGAACAGGAGACGCGTGTTGGTAAT
GCAGCGAACCCGTTCTTAAAACAACGTTTCCAATCTGTTCTCAATGAGAT
GCAAGAACAAGAACGATCTCTACAACAACAGTTCGCCAACTTGTCTTAAA
ACCTCTCATTATATGAAACTGGAGAAATGTGAATTGAAACTCATGTGGTG
GTATTTTTTCTatcatatttttgatattaCTCAATTTTAAATGAATAAAA
CAAATAATGAATTTGgctttcatttttagaaatttcaggGCGCCAAGTCA
CCCTGTCATGTTTGATTGCTTACTTGTTCATGTTAAATTAAATCAGATTC
ATTTTTCTTCTAGCGGGATTTTGTATCGCTGTTTTGTGAAAGCCG Coding sequence (CDS) from alignment at scaffold_309:582449..583793 >TCONS_00058346 ID=TCONS_00058346|Name=TCONS_00058346|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_309:582449..583793 (Clytia hemisphaerica)
cagattataaaaaattcagataaaaaaaagaaaatgtcagCCAAATCTCG
TGGAAAGGGTAAAGAAAAAGCCAGCAAAGACAAAAACAAGAGAGATAAAT
CTTCAAAGAAAGATGGAAAGTATTCTGTACCTCGATTAGTCGAATTAGAG
AATAATTTCTTACTTCGAATGCCCGAACCATTTGCTTCTAATCTTCAAGA
AGCGTTGGAGAACGGTGGATTGAAAGACCGTCTACAAGTGGAATTTAAAG
AGGATGGTCGCAAAGCTAGAGTGGTGTTCGATGGAGTGACTTTTTCAGCA
ACTTTGCTGGATCTACCATGTATTATTGAATCTTGGAAAACGTTTGACAA
AAAAAGCATGTGGAAAACAGGCGACGTTTGTCAAATGTTGGTTTGTAGGG
ACCCTGAAGAACCGTCGTTTAGTtctgacgaagaagaaaatagtACTTTC
GATTACTTCAAAAAACGTCTAAATGAcgttaaaaaatatcaatatccaCA
CGGCATCACGGCGCCGTTGAAAAATGTACGAAAGAGACGTTTTCGAAAGA
CGGCCAAACAGAAATACGTAGATGCGCCGGAGATTGAGAAAGAAGTAAAA
CGTTTATTACGTGCGGACGTAAGCGCCGTTAACGTCTCTTTTGACGTCAT
TGATGATCAGGAGAAAGCGAAACCTGAAGAACTGACGGAGGATATTGACG
TCGACGTTGATGTTGGAGGTCCGTCTATCGATCATTTTGATGAGAATTCG
AACATGTCAAGTATCATGATGGATGCTTCGGATAGTGAGCAACCGCCCGA
AGCAGTGACGCCCGTTGGCGAAGGTGAGGGTGGGGGCATTAATATTCTTC
CGGACATCTCGAGTAGTGAAGATGAAGGTGATGGTGGGGATGGTGTGGAT
GGGGGCTTAGAGAATTTGATCGAACAGCGAGCGCAAATACAACAACAGTT
AAGAGACATTCAAGGGAAAATTCACGAACAGGAGACGCGTGTTGGTAATG
CAGCGAACCCGTTCTTAAAACAACGTTTCCAATCTGTTCTCAATGAGATG
CAAGAACAAGAACGATCTCTACAACAACAGTTCGCCAACTTGTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058346-exon-scaffold_309-1491911889:582449..583793 | TCONS_00058346-exon-scaffold_309-1491911889:582449..583793 | Clytia hemisphaerica | exon |
| TCONS_00058346-exon-scaffold_309-1510915933:582449..583793 | TCONS_00058346-exon-scaffold_309-1510915933:582449..583793 | Clytia hemisphaerica | exon |
| TCONS_00058346-exon-scaffold_309-1575043694:582449..583793 | TCONS_00058346-exon-scaffold_309-1575043694:582449..583793 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:582449..583793 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006751 | TAFII55_prot_cons_reg |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005669 | transcription factor TFIID complex |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
| cellular_component |
GO:0005669 |
transcription factor TFIID complex |
Blast
BLAST of TCONS_00058346 vs. Swiss-Prot (Human)
Match: TAF7 (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.408e-46 Identity = 117/322 (36.34%), Postives = 174/322 (54.04%), Query Frame = -2
Query: 283 ELENNFLLRMPEPFASNLQEALENG--GLKDRLQVEFKEDGRKARVVFDGVTFSATLLDLPCIIESWKTFDKKSMWKTGDVCQMLVCRXXXXXXXXXXXXXXSTFDYFKKRLNDVKK--YQYPHGITAPLKNVRKRRFRKTAKQKYVDAPEIEKEVKRLLRADVSAVNVSFDVIDDQEKAKPEELTEDIDVDVDVGGPSIDHFDENSNMSSIMMDASDSEQPPEAVTPVGEGEGGGINILPXXXXXXXXXXXXXXXXXXXENLIEQRAQ----IQQQLRDIQGKIHE-------QETRVGNAANPFLKQRFQSVLNEMQEQE 1203
ELE+ F+LR+P +AS ++ A+++G LKDRL +E DGR V D V ++ L+DLPC++ES KT DKK+ +KT D+CQMLV + +E ST K+ + K+ + + HGIT PLKNVRKRRFRKTAK+KY+++P++EKEVKRLL D AV+ +++I + E + E DI G E+ + I D S S + + E + INI+ E + E Q IQ+Q+ +++GK+ E QE + N LK RFQ+VL+E++++E
Sbjct: 11 ELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQGLDISSPGMSGHRQGHDSLEHDELREIFNDLSSSSEDEDETQHQDEED---INIIDTEEDLERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKE 329
The following BLAST results are available for this feature:
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