|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058318 ID=TCONS_00058318|Name=TCONS_00058318|organism=Clytia hemisphaerica|type=transcript|length=2091bpRun BLAST on NCBI protein sequence of TCONS_00058318-protein >TCONS_00058318-protein ID=TCONS_00058318-protein|Name=TCONS_00058318-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp MSASVRELDNIDEWIKEWDNFDEKLTSIKDNEYTKLMTLMQDYHRAQTSLRun BLAST on NCBI transcript from alignment at scaffold_309:816620..841073- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058318 ID=TCONS_00058318|Name=TCONS_00058318|organism=Clytia hemisphaerica|type=transcript|length=24454bp|location=Sequence derived from alignment at scaffold_309:816620..841073- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:816620..841073- >TCONS_00058318 ID=TCONS_00058318|Name=TCONS_00058318|organism=Clytia hemisphaerica|type=CDS|length=12456bp|location=Sequence derived from alignment at scaffold_309:816620..841073- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058318 vs. Swiss-Prot (Human)
Match: T120B (Transmembrane protein 120B OS=Homo sapiens GN=TMEM120B PE=1 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.651e-45 Identity = 127/333 (38.14%), Postives = 192/333 (57.66%), Query Frame = 3
Query: 186 KEWDNFDEKLTSIKDNEYTKLMTLMQDYHRAQTSLKKQVDMQVKNMKAFAISLQRIGNQDKTGKNXXXXXXXXXXMTNKSRVFDEFHQGLPKTAGWFLKACIGEINVSLFWDKQH--YKEVYEKFKLKXXXXXXXXXXXXXXXXPQARFFDAIFHGILVWYYSSLTLQEQILRANGSRIKGWYVTHHYLSILVSGFLLIWPKSVTYNLFRSQFYYFVIYLSFVXXXXXXXXXXXXXKLRALGHGKQMDLTGDGLRSSAMKXXXXXXXXXXXXYAFQVYNAITLYYLSYHPECHEWQVLASAVLFFFIACGNVWTLMIVLR---QKMGGEVRLP 1169
+EW + + +++ L ++ QT + Q K++K ++LQR + + + E + ++ + + VF + LPK G +L +G +NV+L ++ YK+ YEKFKL + I +++G + + R D +F+ +LVWYY +LT++E IL +NGSRIKGW+V+HHY+S +SG +L WP Y FR+QF F I+ S VQ LQYYYQ+G LY+LRALG +DLT +G +S +GL FLLPFL G+ +Q+YNA+TL+ LS H EC EWQV A F + GN T + V+ QK G+ + P
Sbjct: 10 REWHELEGEFQELQETHRIYKQKL-EELAALQTLCSSSISKQKKHLKDLKLTLQRC-KRHASREEAELVQQMAANIKERQDVFFDMEAYLPKKNGLYLNLVLGNVNVTLLSNQAKFAYKDEYEKFKL-YLTIILLLGAVACRFVLHYRVTDEVFNFLLVWYYCTLTIRESILISNGSRIKGWWVSHHYVSTFLSGVMLTWPNGPIYQKFRNQFLAFSIFQSCVQFLQYYYQRGCLYRLRALGERNHLDLTVEGFQSWMWRGLTFLLPFLFCGHFWQLYNAVTLFELSSHEECREWQVFVLAFTFLILFLGNFLTTLKVVHAKLQKNRGKTKQP 339 The following BLAST results are available for this feature:
BLAST of TCONS_00058318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.