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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058308 ID=TCONS_00058308|Name=TCONS_00058308|organism=Clytia hemisphaerica|type=transcript|length=1721bpRun BLAST on NCBI protein sequence of TCONS_00058308-protein >TCONS_00058308-protein ID=TCONS_00058308-protein|Name=TCONS_00058308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=436bp MTGCAKVKNFGYDFLFNYQTVKLAEIKDKKVGLSFRVIQLAIVCYIIFYVRun BLAST on NCBI transcript from alignment at scaffold_309:695613..708230- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058308 ID=TCONS_00058308|Name=TCONS_00058308|organism=Clytia hemisphaerica|type=transcript|length=12618bp|location=Sequence derived from alignment at scaffold_309:695613..708230- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:695613..708230- >TCONS_00058308 ID=TCONS_00058308|Name=TCONS_00058308|organism=Clytia hemisphaerica|type=CDS|length=17043bp|location=Sequence derived from alignment at scaffold_309:695613..708230- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058308 vs. Swiss-Prot (Human)
Match: P2RX4 (P2X purinoceptor 4 OS=Homo sapiens GN=P2RX4 PE=1 SV=2) HSP 1 Score: 283.493 bits (724), Expect = 7.140e-89 Identity = 163/391 (41.69%), Postives = 243/391 (62.15%), Query Frame = 2
Query: 95 MTGCAKVKNFGYDFLFNYQTVKLAEIKDKKVGLSFRVIQLAXXXXXXXXXXXXKKGYQEFDTAISTISTKMKGITHVDFTGFNSSLFNGLQVYDAEDYVIKPKDGNSLFVMTNMVITPKQYQGKCPEDPESYQALCKTDKDCQQETSNKYGHGERTGRCVPSYRNSTLTVCEIHGWCPTEDDRLPMIKSNVSTNIP---LLEGTKHATVLIKNQIDFMKFDVATYNIPNTNNRTYMKKCRYNAKTDPLCPIFRLQDIVSSCGDNYTQVAFKGAIYGIIIEWKCNLDYSIEECLPKYRFKRLD--NSRSSISKGFNFRYVNYYVE-KGKRYRTLTKAFGIKFELLAHGKAGKFNIIPXXXXXXXXXXXXXXXXXCCDFIVLNLVPKRNVYRD 1249
M GC FLF Y T ++ I+ +KVGL R +QL I+ Y+I +V +++KGYQE D+ +S+++TK+KG+ + + G +++D DYVI ++ NSLFVMTN+++T Q QG CPE P++ +CK+D C ++ + +G TGRCV N ++ CE+ WCP EDD T++P L+ ++ T+L+KN I + KF+ + NI TY+K C Y+AKTDP CPIFRL IV + G ++ +A +G I GI + W CNLD + CLP+Y F+RLD + ++S G+NFR+ YY + G RTL KA+GI+F+++ GKAGKF+IIP + N+G+G+ LLG+AT+ CD IVL + KR YR+
Sbjct: 1 MAGCCAALA---AFLFEYDTPRIVLIRSRKVGLMNRAVQLLILAYVIGWVFVWEKGYQETDSVVSSVTTKVKGVAVTNTSKL------GFRIWDVADYVIPAQEENSLFVMTNVILTMNQTQGLCPEIPDA-TTVCKSDASCTAGSAGTHSNGVSTGRCVAF--NGSVKTCEVAAWCPVEDD----------THVPQPAFLKAAENFTLLVKNNIWYPKFNFSKRNILPNITTTYLKSCIYDAKTDPFCPIFRLGKIVENAGHSFQDMAVEGGIMGIQVNWDCNLDRAASLCLPRYSFRRLDTRDVEHNVSPGYNFRFAKYYRDLAGNEQRTLIKAYGIRFDIIVFGKAGKFDIIPTMINIGSGLALLGMATVLCDIIVLYCMKKRLYYRE 369 The following BLAST results are available for this feature:
BLAST of TCONS_00058308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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