TCONS_00058299 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058299
Unique NameTCONS_00058299
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length787

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058299 ID=TCONS_00058299|Name=TCONS_00058299|organism=Clytia hemisphaerica|type=transcript|length=787bp
GTACCATCAGATCGAAATTCATCAATGACCGTATGTGAAATTTATGGCTG
GTGTCCGACTGAAGTTGACCAACTTCCAAtgccaaataataatttcagCA
AAACGATACCGCTTTTGGATGGAACGAAAGATTCGACAGTCTTGATCAAA
AATCAAATCCATTTCCCCAAATTTAAAGTTACAAGGAACAATATCGTCCA
CCACCAAAAAAGTGGTTCATATATGAAAAGATGTCGTTACAACTCGACTA
CTGATCCACTATGTCCCATATTCAAGTTGAGAGATATTGTGGAAAGTTGT
GGCGACGATTATACTCAAGTTGGGTTCGAGGGAGCAGTTTATGGAATAGT
TATGGAATGGGATTGTAATTTGGATCACTCATTGGATGAATGCTATCCTG
AGTACAAATTCAAGAGGTTGGATGACGTTGACACACCACTTTCGCATGGC
TACAATTTCAGATATGCAGATTATTATGTTGAGAATGGGACGAGATATCG
AACATTGACCAAAGCTTATGGCATCAAGTTCGAACTGGTCGTTCATGGAG
AGGCGGGGAAGTTTAGCTTCATACCATTGATGTTGAACTTAGGAGCTGGA
ATTGGATTACTTGGCATTGCAACATTTTGGTGTGACTTTATCGTGTTGAA
TTTGGCGAAGAAACGTAACGTGTATCGAAATCATATTTGCGAGAGTGTGG
GACGAGGAATGTCCAGTAACGAAAAAAGCTCTCTTGATGGTGATACAAAG
CAGAATTGTGATGAAAAGAAGACTCAAGAGGAAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_309:672814..678738-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058299 ID=TCONS_00058299|Name=TCONS_00058299|organism=Clytia hemisphaerica|type=transcript|length=5925bp|location=Sequence derived from alignment at scaffold_309:672814..678738- (Clytia hemisphaerica)
GTACCATCAGATCGAAATTCATCAATGACCGTATGTGAAATTTATGGCTG
GTGTCCGACTGAAGTTGACCAACTTCCAATGCCAAATAATAATTTCAGGT
AAACAAATTCTCAGGAAAAGCATCGAATCGTTTCACTTCCATGAAATACT
AAAGTGACAAATATTTGTTGAAGTTTAATTATACCATAGCCCTTATAAAG
AACACTTGTCTTGAAGCTTTTTGTTTCAACTTTTTGTTAGCTTTTCCTTT
GTTATCATCAAAAAATGAAAATCGATTTGCTCAGTTTTTGATCCACGTTA
CCAAGTACACCTCTTGGGATTGGTTTAAGATTTAATCACATGATCAAAAA
GCGAGCAAAACAAACTAATTTCTCAAGGCAAGTTCAAGTAACCCCCAGAC
CGGGGTTTTTATACAGACAATGATTATACACCTATTTATACCTTTGTTTG
ATTTCAGCAAAACGATACCGCTTTTGGATGGAACGAAAGATTCGACAGTC
TTGATCAAAAATCAAATCCATTTCCCCAAATTTAAAGTTACAAGGTAAAA
TTATATACACCCCCTTCTCAGAGACACGTAGGATTTTTTAAGCCAGTGGG
GATAAAAATAACGGAAAACCCTAAATCTTAAACCATAACCCTAACTGAAG
CTGGATGGGGATTGATATTCTCATATTTTTTATGGCTTGGTATTTTAAGT
TAATAGAATTTAGTGGGGATGGGCAAATAAAAAATATTTTGCAGTGAGGA
TTGGTTTATTTGATTTTTCTCAATGGAGACAAAAATTAGAGGATAGTTTT
CCATCGGGGACGATATTTTGGCGAATTTATCCAGTGGGAAAGGGTTCCCA
GTTGGTCTGTGAGAAGGGGGTGCTTATATTTAAAGATACATAACCGTTTC
ATGTTAAAACTTTAACGAGACCACTCACAATGGTTTTGTACGCCCTAAGA
AAAGAGTAAAGTCAAAATGTACAAAATAAGAATATTTTACCACAAATGAT
ATACAAAATACAAATTTCATCAAAATGAAACAACAAGTTACAATTTAATT
GCACTAAACTTTGTTTGAAGTCAGCAAAAAAGGTGAGGTGGGGGCCACCA
GCAACTTTTCATTAAAGTGAAACTTTTTTGTGTGTTTCACTTTTCAAATG
CTTCTATTTGATGAAAAATGTCTCAAGTGGCCCCAGCATCTCAATTTAAG
CCCCGAAGGGACTAGAGATGAATCTTAAACCTTTCTTAGGCAAGAAAAAG
TGAAGTCCCGCATTTAGAAATTTTGTTTGAAAACCACACGGGTCACGTGT
TCTGGATGGGAAATAAGTTGCTTCGTTTCCCATCCTGGATTTTCAGATCT
AGCCCCTTCGGGGCTTCGAAACAAATGGGTCCCAGACCTTTAGACTCTGG
TCTATTTTGGAGTCTATGTATGATAAGAAAAAATGACAGTTTTTTTATTT
GTGCAGGAACAATATCGTCCACCACCAAAAAAGTGGTTCATATATGAAAA
GATGTCGTTACAACTCGACTACTGATCCACTATGTCCCATATTCAAGTTG
AGAGATATTGTGGAAAGTTGTGGCGACGATTATACTCAAGTTGGGTTCGA
GGTAATGTTTTTACAAAAACTGAGACATGTAGAATAGAGGAAGAGAATCT
AAAGGGTTTTTAGACCCCTTTATCACAGACCTGGTAGTAAAATTGGAAAA
ATTGTCGGCTAAAATATTCTCGTCAGACAACGGAAACAGGTAGTCTGAAT
CGACACAGACCTCTATAGATATACTTACTCGATTTACTCCTGTCAGACCA
TCAATTATACCATCTTTATCATCCTAAAGGCTTTTATGTGCAAGCTAAAC
CGGCGTTTGCGACGACGGGAACCGTCTAGTGCTTCCTATATAAGAAACTT
TTTCCACCTATGGGAATCATGGCAAAATCAAAGAGATTCAATTTTTCTTG
GTCATTCTAGGGAGCAGTTTATGGAATAGTTATGGAATGGGATTGTAATT
TGGATCACTCATTGGATGAATGCTATCCTGAGTACAAATTCAAGAGGTAG
TCTGATATTATTGAATGGACACTTAAACTATCCACCATGAATACACCTTT
TCGACCGTAGCCGCCGATTGCTGTGCAGGCATTTTTTTGTCCGTTTTGCC
ACCCTAAAACCGTCCCAGTCTTTTTTTCGCACCTATAGACAATAGAAAAA
TGTCTAAAAAAGGATTGGATCGAGTTTAGGATGACCGCGCGACTATGGTC
GAAAAGGTGTATTTATTATCAATTTTTCTTTACACTTATTTAAAAAAAAA
TTTCATTCGAAATGATAAAATGTCCTGTTGAACGAATGGTCCGGTTTTAT
CATTTGAATACAAGCTTTGATAGATAAACAAGGTCTCCGACGCCGTCCGG
TTTAGATTTTGTATGTAGTAATCTTCTTTTCAAATGGCATTTTCTTTAGG
TTGGATGACGTTGACACACCACTTTCGCATGGCTACAATTTCAGGTAAGA
GCTTAAATTACTTCCATATACGCTTCTAATAATTTTCTACCTGGTTATAT
GAAGTCTTTGTTTTAATTAGCTAACGTTTTAATTGAAATTGTAATTTTAC
TTTATTACAACTTCTGCACGGTTTCATTTTTGTTTTCAAACCTGAGATAG
AATTGCTCTTAAGGTCAATTAGTAGCGATAGTTTAAGTATCAGAGGATAT
CGAAGGCAATGGTATATGAAGGTGACGGAAAGAAATTGAGTTGATGTACG
GCTCTATATCGCCTTTGCTTATATGATATTTTTTATGTATTTACCATTGT
CGACCAAAGTGGACGGTGATTTTGGTCAACTTTACTTTATACCGTCTCCT
TCGATTTACAAAAACTCGGCAGTGTTCTAAAGATCGTTGCGCACAAAAGT
AAAGTCACATGGTTTTGATAATGTGATAGTCTTTAGACAATAATTTCCTT
CACATTTTTAGATATGCAGATTATTATGTTGAGAATGGGACGAGATATCG
AACATTGACCAAAGCTTATGGCATCAAGTTCGAACTGGTCGTTCATGGAG
AGGTAATGTTACTATAAGTTGTTTCTACAAAATCATATATAGCTGAACCT
AGTGCTTTTTTTCGCATGGCACTATCCATTCAAAGGCCTAAAATAACACC
ACAATTTGTCTGTAAACGTGACTGAGAGAAACATTTTTCAATTTCATGAC
GTCAGCATTATTGTGTCGAAGAAATTAATTAAACCTCAATTCATTCGAGT
TCTCCTTTTTGCATATCTCAATTTATAGGCGGGGAAGTTTAGCTTCATAC
CATTGATGTTGAACTTAGGAGCTGGAATTGGATTACTTGGCATTGTAAGT
GTTTGTCACGGCGGCAAAAAATGAGTTATTTTCTCCCACTGGCCTCAAAT
TAGCTTATTAGTGACTGTTAGGTTGTCAAACCTATAGATATTCTTAACCC
TTTAAGTGCCGATGTCGTATATATACGACATGGGCTATATAGGAGGGCGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGG
ATATGATTTTGCAAAAAAAATTCAAATTTCAAAAAATTTTCAAAATTCGT
GCCCAGTCCCTTTTTAGCAATTTTTCTAAAAAATCTGAATTCAAAAGTCA
GAATCAAACCTTTAATCTGCTTCAGTTACAAAGAGCATAAAATTCTGCGT
CAGAAAATGGGGTCATTTTTTATTCTAGGATAATCTGGTCACGAGATATC
GTAATTTAAAATTTTTTGGAGACTGGGACGAGGTTGCTAAATATAAAACC
ATAAAGTATTCAGGGGGTAAGNNTGAGGATTTCTACCAGAAATAAAAGTT
TAAACAAAAACTCTAGTTTTTGAAACATGGGACCCTATTTAAACACCCTC
TTAGGGTTGTCGAAAAATCGTCAAATTTGGTAGGTAGGTTCCCTATGATG
AAAGAACGATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTAACTGAATTTTT
ATTTTTTCGTTCTAAATTCGATGACGTCATCAGCTATCACGTGACAATTC
TTTTTTCAAAATTTTTTTGAAATTTATTTTGTGAAATTCATATAAAGGTT
GATTGTGGAACAAAAAGTGTATAATGATCAACAAAGTGGTCGAAAATGCC
GCAAGTTGTATTAGGTTGCGGAGCGAGTGGGAGAAAAAAGGCCATTTTTT
GCCGCCGTGCACAACGGGTATACACAACCCATTACTTATGACCAATGAAG
CTCACTGATATGCTTATTTTTTCACGAAATCCACGTGTCAATGTGCATAT
AAAAAGGAAAACATCAACATACTTAAGAAAAACTTTTTTTTTCATTTTTG
CGCACCCTCGACTCCTCCTCCTCGATTACTCCAGTTTTACGACACTGGCC
TTGGCCTTGTGTTAAAATATCGACAGATGATTTGTGAGAAGTAATACTTA
TTAGACGAAGAAATGAATAATCAATTTTTCATTTTATTTTTCAAATTCTC
TTTTGTATTGCAATTTTGTTTTCAGAATTTACACAGTTATGCGAAACCCT
TTGTCAAATGAACTATTTACCTTACTTGTCGCCCACAAACAGCAATTCTC
CTTGTCAAAAAAGGTTAAGTTTGAATCGGAGGGTAATATAATTCCGATTT
CTCTCTTCAGGCAACATTTTGGTGTGACTTTATCGTGTTGAATTTGGCGA
AGAAACGTAACGTGTATCGAAATCATATTTGCGAGAGTGTGGGACGAGGA
ATGTCCAGTAACGAAAAAAGCTCTCTTGATGGTGATACAAAGCAGGTACT
CTTAAGCCTTCTTCCTGTCTTCTGTACTAAAATAAACGCATCTTTTTTTT
CTCATTGTATATCTTACCCAAGATTGACGCCCGAAAATCTTTTTATAAAG
AAGCTCGAGGCCCAAGTTTCAAAAATATTTGAAGAATAATTCTGTACTTC
AAAAGTTGTGTTAAACTTTTTCGTCAAATAGAATTTTTATGCTTTTTTAT
CAATAGTGTCATTCTCTACAAAATTCTTTATTCTCTTTCATACGTTTTTT
TAGCATTGAATAATCTTTAAATTAATTCTCAAATGTTTCAGAATTGTGAT
GAAAAGAAGACTCAAGAGGAAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036723XLOC_036723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058299-exon-scaffold_309-1575043694:678641..678738TCONS_00058299-exon-scaffold_309-1575043694:678641..678738Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:678195..678281TCONS_00058299-exon-scaffold_309-1575043694:678195..678281Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:677138..677282TCONS_00058299-exon-scaffold_309-1575043694:677138..677282Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:676693..676778TCONS_00058299-exon-scaffold_309-1575043694:676693..676778Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:676245..676289TCONS_00058299-exon-scaffold_309-1575043694:676245..676289Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:675687..675777TCONS_00058299-exon-scaffold_309-1575043694:675687..675777Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:675395..675460TCONS_00058299-exon-scaffold_309-1575043694:675395..675460Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:673144..673278TCONS_00058299-exon-scaffold_309-1575043694:673144..673278Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1575043694:672814..672847TCONS_00058299-exon-scaffold_309-1575043694:672814..672847Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:678641..678738TCONS_00058299-exon-scaffold_309-1510915933:678641..678738Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:678195..678281TCONS_00058299-exon-scaffold_309-1510915933:678195..678281Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:677138..677282TCONS_00058299-exon-scaffold_309-1510915933:677138..677282Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:676693..676778TCONS_00058299-exon-scaffold_309-1510915933:676693..676778Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:676245..676289TCONS_00058299-exon-scaffold_309-1510915933:676245..676289Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:675687..675777TCONS_00058299-exon-scaffold_309-1510915933:675687..675777Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:675395..675460TCONS_00058299-exon-scaffold_309-1510915933:675395..675460Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:673144..673278TCONS_00058299-exon-scaffold_309-1510915933:673144..673278Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1510915933:672814..672847TCONS_00058299-exon-scaffold_309-1510915933:672814..672847Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:678641..678738TCONS_00058299-exon-scaffold_309-1491911889:678641..678738Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:678195..678281TCONS_00058299-exon-scaffold_309-1491911889:678195..678281Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:677138..677282TCONS_00058299-exon-scaffold_309-1491911889:677138..677282Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:676693..676778TCONS_00058299-exon-scaffold_309-1491911889:676693..676778Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:676245..676289TCONS_00058299-exon-scaffold_309-1491911889:676245..676289Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:675687..675777TCONS_00058299-exon-scaffold_309-1491911889:675687..675777Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:675395..675460TCONS_00058299-exon-scaffold_309-1491911889:675395..675460Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:673144..673278TCONS_00058299-exon-scaffold_309-1491911889:673144..673278Clytia hemisphaericaexon
TCONS_00058299-exon-scaffold_309-1491911889:672814..672847TCONS_00058299-exon-scaffold_309-1491911889:672814..672847Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:672814..678738 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.537542	1.04838	0.608632	1.1909	16.973	14.415	9.36208	17.1523	34.2278	33.8645	22.0663	10.0492	2.145	2.94866	0.305234	0	0	1.8027	0.854502	1.63461	0.519726	0	0.616335	0.560338	0	0	0	0	0.584068	0.48526
Blast
[Close]
BLAST of TCONS_00058299 vs. Swiss-Prot (Human)
Match: P2RX2 (P2X purinoceptor 2 OS=Homo sapiens GN=P2RX2 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.442e-58
Identity = 99/227 (43.61%), Postives = 141/227 (62.11%), Query Frame = 1 
Query:    1 VPSDRNSSMTVCEIYGWCPTEVDQLPMPNNNFSKTIPLLDGTKDSTVLIKNQIHFPKFKVTRNNIVHHQKSGSYMKRCRYNSTTDPLCPIFKLRDIVESCGDDYTQVGFEGAVYGIVMEWDCNLDHSLDECYPEYKFKRLDDVDTPLSHGYNFRYADYYVENGTRYRTLTKAYGIKFELVVHGEAGKFSFIPLMXXXXXXXXXXXXXTFWCDFIVLNLAKKRNVYRN 681
            VP  +  S T CE++GWCP E        +  S +  L     + T+LIKN IH+PKF  ++ NI    ++  Y+KRC ++  +D  CPIFKL  IVE  G+ +T++  +G V G+++ WDC+LD    EC P+Y F+RLD    P S GYNFR+A YY  NGT  RTL KAYGI+ +++VHG+AGKFS IP ++NL   +  +G+ +F CD+I+L    K  VY +
Sbjct:  160 VPYYQGPSKT-CEVFGWCPVE--------DGASVSQFLGTMAPNFTILIKNSIHYPKFHFSKGNIA--DRTDGYLKRCTFHEASDLYCPIFKLGFIVEKAGESFTELAHKGGVIGVIINWDCDLDLPASECNPKYSFRRLDPKHVPASSGYNFRFAKYYKINGTTTRTLIKAYGIRIDVIVHGQAGKFSLIPTIINLATALTSVGVGSFLCDWILLTFMNKNKVYSH 375
The following BLAST results are available for this feature:
BLAST of TCONS_00058299 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P2RX23.442e-5843.61P2X purinoceptor 2 OS=Homo sapiens GN=P2RX2 PE=1 S... [more]
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