TCONS_00058285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058285
Unique NameTCONS_00058285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2067

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058285 ID=TCONS_00058285|Name=TCONS_00058285|organism=Clytia hemisphaerica|type=transcript|length=2067bp
aaaaatactcttgataataaaatttctcgaaaattaCATACAAAACTCAC
AGAAGAAATAAATATACATCATGGTTGATACAATTGACCTCTTTCGAAAA
CTTGGATCTGGTGCAAGATTCGATTTGAAAAGATTCAGAGATGATGCGGA
CCAGTTTCAGatggttCACAAAAAGACTACAGACAGTATTTCCAAGAACG
ATACAATAGACTTTGATGCGTTGGATTTCTTTGGGAACTCTACCGCGCCT
CTATCATCAAAAGAAAATGTGAACTGTTCAAAAGGGAAAACAAGGAAACG
GCAAAGACGTAAATCTAAAACTGAAGAAGATGAAGTTTGTGTTGACAAAA
ATAAGGATGTTTCTGAAGATGAAAGCTcgactaaaaagaaaaaaaagaaa
aagaaaagctcAATACTAGATGAATCAAATGATCAGACTAACGATGATAT
CAcaataatgaaaaagaaaaagaagaagaagaaggcaTTGGGAACAAGTG
ACAATGATGATGGAGAACAAcaggaaaaaacaaaaagtgaaaaacaaacT
CGAGAAAAACTTATCGAACAACAGAAAGAAAAAATTAATATATTACGGAA
ACAACACCGTATCACAGTTCATGGTGCCGACATCCCTGATCCAATAGAAT
CTTTCTCCGACCTCAAAAGATTCAAAGTCTCGCAAACGTTACTGAAAAAT
TTACAAGGAAATTCATATGAAGAACCCACACCTATACAAATGCAAGCAAT
ACCCATACTAATACAGCAACGTGAATTATTAGCGTGTGCACCAACGGGGA
GTGGCAAAACACTTTCCTTTATTCTTCCTCTACTGCATCATTTAAAGgaA
CCAAAAAAGTGTGGATTACGCGCCGTGGTTGTTTCTCCGACACGCGAATT
GGCACAACAGATACATCGTGAATTTGTTCGTATGAACGAAGGATTGGGGT
TGAAGATACACGTCTTAACGAAAGCCAAAGCATCTACTATAGCCAATAGC
AAAACAAATCATTTTGATATTTTAGTAGCCACACCAAATCGTCTAGTACA
CCTTTTACAACAGGACCCACCGGCCCTACAATTAAGCAGTGTTGAGTGGC
TTGTGTTAGATGAAGGTGATAAATTATTTGAAGAAGGTGATGCTGGATTC
AGAGATCAGgtAGCGGCGATTTTCCAAGCTTGTGATAACCCACAGATCCG
TCACACCTTGTTCAGTGCAACACTTGCCAATAACGTCGAAGAATGGTCCA
AACTGCACCTGGATAATGTCATACGTATCAACATCGGTGCAAGGAATGCT
GCAACAGATACTGTCGAACAAGAACTGGTCTTTGTTGGACAAGAATCAGG
AAAACTATTGGCCATGCGTCAAATTATCTTGCGTGGTTTCCAGCCACCCG
TTTTAGTGTTTGTTCAGAGTAAAGATAGAGCTAAAGAACTGTTTAACGAG
TTGATCTATGACGGGTTGAACGTGGATGTTATACATGCGGACCGGACACA
ATTACAGAGGGAGAATGTTGTGAAAAGCTTCAGGGCTGGAAAGATCTGGA
TATTGATTGCCACTGAACTAATGGGGCGTGGAATCGATTTCAAAGGCGTT
AACATGGTTGTCAATTACGATTTCCCGCCCACTGCTGTCAGCTATATTCA
CCGTATAGGTCGAACTGGGCGTGCTGGGCGAAAAGGAAGAGCCGTCACTT
TTTTCACTGAAGATGACAAAATCAACCTCCGAAGCATTGCAAATGTGATG
AGATCATCAGGCTGTGAAATCCCCGAATGGATGCTCCAAATCAAAAACCC
TAACAAgagaacaaaaaagaaattatcgAAGAACCCCATAGAACGTGACC
AAATCAAAACATCTTCAAAATATGATATCCAAAAATCTAAACAACGGAAG
CAAATGATCGAacattcaaaaacaaagaagaaagataaCGAAGAACCATC
AACTAAAGACACTGATGGAAAATGAAAGTGGTTTTCTTaaagtcaatttt
attttttgtaatcattttattttaggccaatatcaaaattcaataaGAAA
GCAAACAACTAAGAATT
Run BLAST on NCBI

transcript from alignment at scaffold_309:400550..414453-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058285 ID=TCONS_00058285|Name=TCONS_00058285|organism=Clytia hemisphaerica|type=transcript|length=13904bp|location=Sequence derived from alignment at scaffold_309:400550..414453- (Clytia hemisphaerica)
AAAAATACTCTTGATAATAAAATTTCTCGAAAATTACATACAAAACTCAC AGAAGAAATAAATATACATCATGGTTGATACAATTGACCTCTTTCGAAAA CTTGGATCTGGTGCAAGATTCGATTTGAAAAGATTCAGAGATGATGCGGA CCAGTTTCAGGTTAGAATTAAATTAGGGCTTTTTTAGGTAAAACAGGGGA TCAAAATCAAGAGTTTTTCCCCGTTGGGAGTTTTCTTATACGCCTTCTTA CTTAGTCTACTTATGATTTTTTGAGATTTCGACATGGAAAAAAAATCAAT TTTTTTAAATAACTTTCAAACTAATTTTTCAAATTTAATGCTTGATTGCT CAAAATTCAGGTTAGAGCATATCCTATATACAATAAAAAAGGATGAACAA AGATTTTAAATCTTGAAGCTCGCAATATCTGGACAAATACATTTTTTGGT GCACCCGGTTTATTTCTCCAAACCCCCTTTCCCCTTTCCGTACAAGGTCC CAGTTTTTTTTTCGTCAAAAAAAAATCAAGAATTTTTGCCCTAGAATTTA TCATCCATGAAATTATCTTTGAAATTTACAGAAATTTACATAGGTATTAA TTTAAAACAATTAATGTTAGTCCCTTAAAATTCTATCTTTAATTAATAAT AATAAGATGAGTGTAATTTTTCTTTTTCTTTTTAGATGGTTCACAAAAAG ACTACAGACAGTATTTCCAAGAACGATACAATAGACTTTGATGCGTTGGA TTTCTTTGGGAACTCTACCGCGCCTCTATCATCAAAAGAAAATGTGAACT GTTCAAAAGGGAAAACAAGGAAACGGCAAAGACGTAAATCTAAAACTGAA GAAGATGAAGTTTGTGTTGACAAAAATAAGGATGTTTCTGAAGATGAAAG CTCGACTAAAAAGAAAAAAAAGAAAAAGAAAAGCTCAATACTAGGTATAA AAGATTCTCCACAATCTATGACTATGGGAGGATTTGCACAGTCCATTCTC GCCTAATAAGGGAAGAAATTTTCGCGGAATTTAATTTCGCAGTTCACAGC TTAAAATTCAAAAGTTTGGCAGAATTTAATTTTGCGGTTAAGAGAAATTT TTGTTCATAATAAGCCCTATTTTGCCCTAAAAAGACCAATTTTAGAGGTC GGATTTTGTCAAAAATCCGGGAAATTAAATTCTGCGAAAATTTGCCCCGT GAAAATTTCTTCTCTTATTAGGCGAGAATGGATTTGCCACTAATGAAACA ACTTCTATTTTAAAGTCAAAGATTTCTCGATATCTCGATTCCACCAGTTT ATTTCGAAAAGTATAGTGATCTATAACCAAGGAAAACCATAGCCTTTGAA AGTCCAAAATCTGGAAAGTGAAATTTTGTGAAAAAAAAGGTTTGGAAAAT GACTATTGATGTCAGTTTATGAGGAGAGAAAACCTTTAATAACCCCCTTG GTAATCTTTGATAACCCGCTTGGAAAATCTGAAAAAATGAACAAAAAACC CTTGGGAAATCAAGGCTCAGACCCTTGAAAAGTTCGTCAATACCCGGGGT ATCCCTGCATTGTTTAAGAATGGAATATCCCATCACATTATTCGTCTATC AGGATCACGCCCTTAAAATTACTGTTTCGCAGTACTTAAGAACAAAACCT TTCATTTCGGATCTTTTTTCTCCAACAATCAGATGAATCAAATGATCAGA CTAACGATGATATCACAATAATGAAAAAGAAAAAGAAGAAGAAGAAGGCA TTGGGAACAAGTGACAATGATGATGGAGAACAACAGGAAAAAACAAAAAG TGAAAAACAAACTCGAGAAAAACTTATCGAACAACAGAAAGAAAAAGTAT TCAATCCCCGGAAATTCTCTCCTTTTCTCAAAATTCAACCAACTTTAAAG AGTATAAGATTTGTTTTCTCCATCCGCTCTTATCCGCCCTCCACTTATCC GCCCTTATGATTATTCGTCACTACAGTTACACATTTCTCGCGATAAATAA ACATCATTGCAGGCCTCGTTTTTGAATGGGATTATTTCTTCAAGTATGTA TTCACAAAAAAAAACATTTTAAATTTTGATGCAAAAAGTAAATCTGAAGT ATCTTGGCAATACTATTTTAAAAACGAAGCTCGTAGATATTTTTTATGTA TTTCGAGGAGAGCGTATGTATGGGTCCCAGCGTGAGCCGTTTAAAGTGGG ATTTGTGCAGCTGCACTATGACTTTTGTACCTTCTAAACACCGTTAAACG CCATTTAATTGAATAAAGCTGGTTTTTGCCTTCTCAAACACACATCTATT TGTATTCGTTCCTTTCAGATTAATATATTACGGAAACAACACCGTATCAC AGTTCATGGTGCCGACATCCCTGATCCAATAGAATCTTTCTCCGACCTCA AAAGGTAAGAATACACGGGCTGCAAAATTAAAGACTGAAGTCAAATCACG CTTTTACTCGAAATTTTTATGCGTTTGTTACATGGCCTTCATTGGTTGGT TAGAATTTATCGACACTAATAAAGTTATTAAATTTAAGTTGTAAAGCAAG TCTAATGGTAATGAAATCACGTGAACTTTTTCAAGTAATCACATGTTTTG ACTGCACTGCTATAATTTTGCAATCCGTTTATTATAGAGAAGGCTTTGTT TTTCAAAATATTTTTCCGTTTTTGGTTTATTCCCAGGCAGAATTTCGTGG GTACTTTTGATGTTTCAATCAATGATTTGAATTTTTTTATTTTTCACTCA CTTCAGATTCAAAGTCTCGCAAACGTTACTGAAAAATTTACAAGGAAATT CATATGAAGAACCCACACCTATACAAATGCAAGCAATACCCATACTAATA CAGGTACTATAACAATAAATCTCATGTTTTATGTTTTGAAATTTTTCTTA TTTTTTAAGAGATTCGAAGTTATACGTCACGAGTAACACTTGCTTCGTAA TGTCTTGGCAACTTGAACTAGAATAAAATACTTTTTCTACTCTTTCGAAT GAAGGCGGGAGCGTCCGTGATGATATTTTATTCAAAAGACTGCCATTCTA ATGATTAACAACGTAACCTCTAGCACGTGCACTGACCTTTATAAACCCTG GACCAAGCTTTATCCGCCATGTTTGATCGGAGTTTTTTTGAAACGGTACC CGCAAAGAAGCCATTGTAGTGCTAAAGTTTTGCCTAACGGCAAACGGGGC TACATCACTTGTGTGCAAGTGAAATTAATCTAGCGCTCTCGATGCGGGTA CCACTTTCAAAAAAAACTCCGATCAAAATATTTTGCTTGGCTGGGATTGA GAAACCAGGGTCTATATAAAGTTCAGGGTCTAAAACGAAAAAGCTTTCTT TGACCATTGGTAATTATATCTCTGTCATTGTTTTCAATTTTCTNAGTTCA AAGTCTAAAACGAAAAACCTTTCTCTGACCATTATTATCTCTGTCATTGT TTTCAATTTTCCAGCAACGTGAATTATTAGCGTGTGCACCAACGGGGAGT GGCAAAACACTTTCCTTTATTCTTCCTCTACTGCATCATTTAAAGGTAGG TTTTAATGATTTTTATACACGTTTTTTTATAAGAACATCCAAAATTTTTA AAGCCTTCGGATAACCTTTTGAGTTTTAAAATGTTTTTAGCATGTTCTTA TTTTTATCAGTTTGTGAGTATTTTTATTCATTTTCGTAAGAAATTAGATG TTTGGAGTCCACGAAGCTTTTTAAAAATGTGCTTAACTTGTTCTTAACAT TTTGGAGCCTTATCTTCTTTTATAGTTTGTTCTTATAAAAAAAACGTGTT GTGTCGTATATACTGTGCTAAATGATTGTCAAGGAAGAATAACAGGAAAA GAACCAATGAATTCTCATAATGTGTCTCTCTAATTCGATCCTCATGGGAT TAAAAATTTTCTTCGGATTAGAGAAAGATTCGAATTGCAGAGAGTAATTT AAACCATTTTCCAGCTGAGAGGACTAATATTTTTGTTCGAATTACAGAAA GATTCGAATAATAGAGGTTCGAATTAGAGTGAGTTGATTGTATATCACTT TTGTGCGCTCCTAGTTCATTATACAATCGAACCTCTATAACTCGAATGTC TCCTAACTCGAACAAGTTTTGTGGTCCCTTCACTTAACAATGCCTTATAA ACTATACTCTATAACTCGAAACAATTTTCTTAACTCGAATTTGTGTTCCC TGTGTTTGTTCGAGTTATGGAGACTCCGCTGTATTTGCTTTAATCAATGG GCCATTCCATTTTATATCTATACAGGGGTGGACGAACATTTCCAGTGGGT AATCGGAGAAGAATCTCCAGGGATCTAAAAGAGTGTTTTTCATTTTTCCA AGGGGTAATAAAAATGTTTTAAAATTTTCAGGGGGTTAAAGACTGATTGT AAAATTTTCCAGGGGGTATCTACACATTTTCAAAAACAGTTTTTTTTTTA CTTGAAAAGGTTCGTCCACCCCCTTGTATGAAAACTTAATGGAATGACCC AATGAATTTGTGAAGTTTCTTTCATTTTTAGGAACCAAAAAAGTGTGGAT TACGCGCCGTGGTTGTTTCTCCGACACGCGAATTGGCACAACAGGTATTG TTCATTCGTGTGTGCGTTGGGTAGTCAATAAACAGATAGATGTAAAGTCC GTTCGAGTTTTGGTTCTAGAAGCTTTGTTTTTAGTACATGAAGTTGACAC TCTCTAATCCGACATTCTACAATTTGATCGATAGGCTCCATTATTCGATA ACTGTATTGAAAGTCACCGTCAACAAGAAACTCATAAAACGACGCTCTAT TCGATACGCTTTATTCGATGAAAATCGTAGAGCGTATTTCGAAGCCCTCT AACTTCAGATATATGATTAGTTTCCCCTGAGCAGCCTTGAGTGGTCTTAC ATCGAAAGTCACATCCCCTAAAAGGTAGCTCATTAGTGTCGAAAACNTGG TCTTACATCAAAAGTCACATCCCCTAAAAGGTAGTTCATTAGTGTCGAAA ATCCTGTTTTTGTTTAGCTGCTGCTGATTTTTTTTAGATACATCGTGAAT TTGTTCGTATGAACGAAGGATTGGGGTTGAAGATACACGTCTTAACGAAA GCCAAAGCATCTACTATAGCCAATAGCAAAACAAATCATTTTGGTGAGGA ATAGAAATCATTCTCAATACTTTGGTTTATTTTTTTCGGATTTTAAAACT GTCTCTTGCTCCATTGCGAATGAAGTTGCGCTTAGGTTATTAATCACACC TCTTTTACTTCTTTAGATATTTTAGTAGCCACACCAAATCGTCTAGTACA CCTTTTACAACAGGACCCACCGGCCCTACAATTAAGCAGGTATGTACTTT TACATAAGTTCTGGGGAACTGTCCTTGACGTTTGGCTGACAACAGAGTTA TGTTATGCCGTGATAAGAAGAAGTCTAGCTTAACTTCTGCACCATATAGA GCCGACACAGGAATAGTACAGTTTAGCACCGAACCACTCACTACACAGAA TGCTTTTTAAGAATCGGCTCAAATTTGCTAAATCTTGAAATTTTTCAAGA TTTATTAAATCTCTGTCATAAGCAAAATTAGAAGATAAACTTTTAAGAAG AAATTCAAAAACTACACCCAAATTTCCTCCGTTATTCGTTATACAATTCG CACTATTAGCTGGAAAGTCGTCTAAAAACTCCGTAATCCGGAGTCCACTG TTTACGTTTATGTTTCTTTAAAGTTGATGTAAAGTAGTACTTTTGATTGA CTATCACCAGAACCTGGATAGAAAACGATATAAAAGAGGAGATAGGCTTT CATTCATGATACTCGTGACGTAATGTTTCATACGGTTGTTTGCCGCCAGT TTTATTGTTTGAATTCAAAATTGGTGGCTATCTCCCGGTCTTTTGTAGAT GCTTCCGTATTAAACATTACGGCGTGAATAACACGAATAACCGATTGACT TGAAAATTTGTAATTGATAAATATTTTTCATTTCTTCATACAGTGTTGAG TGGCTTGTGTTAGATGAAGGTGATAAATTATTTGAAGAAGGTGATGCTGG ATTCAGAGATCAGGTTTGATGTTGGCGCAATTTCGTCATGTTTTTTCGCC TGATTCTTTGAAACTTTTTCTTCTATTGTACTCTTTGCTTCCCCTTTCTT TACTACCAATTACTAACAACAACTATAGCTTCGGAAACAAAGCTCATGTT GCTATCTGCATATTGTAACCCAACTTTCAACAACTATAAACCTAAGCAGT CGCTGTATTTTTTGTTTTATCAATTTGTCACTTCTCGATTTTCAAGTAAA CTGTCACTCATTGCAAATTGTGACCCTACATTATATTGGGGGTTTAAAGA CAATTTTATTTTATTAGGTAGCGGCGATTTTCCAAGCTTGTGATAACCCA CAGATCCGTCACACCTTGTTCAGTGCAACACTTGCCAATAACGTCGAAGA ATGGTCCAAACTGCACCTGGATAATGTCATACGTATCAACATCGGTGCAA GGTGAGAGCTATATTAAGAAGACACAATTTTTGGGGCAAGCTGGAGTTTT TGGAAGCTCATATTTGATTTGGTTGGTCGTTAGCCAGTAATAAAACATTT TTTTAACTTTTTCTAAAGAAGGCATCATTCTTATTACTTTAAATGACCAA TTATTATTGTATCTTATAAAAACTCCAGAACATCCCAGCACATCCCAATT TTTGAGTAAAACTTTTAAATTGATCAAATTTATTTTGATAAAAAGCGGAA AAGCGTTTCACAACGTTGCGGAATTTGACGACGCTGCGGAATTTGACAAC ATTAAAATAGCGGAATTTCACAGCGCTGTGGTTCTATGAATTATCCAAAC TAAAGAAAAAACTCAAAAATTAGTACCACTTTTATGTAAAAATTTTGCCA ATTTTATGCCGGCTACAGGCCGACAGATAACGCCAAAATGTCCGGCGTAA AAAAGGACCGATGAGGTATTCTTTTTTGGATAATTTTCTTTCTGTTTTGA TCATGTTCAGTGTGCATTTTATTTTTAATTGTGAAGTAAATTTCTCTAAT CGAATATTTTTGTCCAGGAATGCTGCAACAGATACTGTCGAACAAGAACT GGTCTTTGTTGGACAAGAATCAGGAAAACTATTGGCCATGCGTCAAATTA TCTTGCGTGGTTTCCAGCCACCCGTTTTAGTGTTTGTTCAGAGTAAAGAT AGAGCTAAAGAACTGTTTAACGAGTTGATCTATGACGGGTTGAACGTGGA TGTTATACATGCGGACCGGACACAATTACAGGTACAGCTCTTTCGTCTCA GACAGATTTCCGTCTCAGTGAAAAATAAAGATGCTTCTCAAAATTCTGTA TAATTCACCAAAATTTGTGAAAGCCATTTTCCGTCTCAGTCAAAAAAACA ACCATGTTTTGACCACTACCAGTGTTAAAAGTTCTTCCGTCTCAGTAAAG TATAAAAAAATGCTTTTACCGCCTCAAAATTCTGCATCATTTACCAAAAT TTCAAGAATAAGTGTTAATTTGCTGTGTAAAATCCATTTTCCGTCTTAGA CGAAAAATCTTGCTTTAACCACTGAATAATTGTTTTTTGGCAAAAAATAA TCTGAAAATTTCCATGTGATGTATAATAATCTCTCTACCCTACTCGCAAT ATTGACGTTTTGCAGAAAGTCTATCAATTTTTTGGATGAATTGACACCAA ATTCTTGGCTTCATTTCCACAATTATTACAGATCTAAAGCTGTGTTTCTA TGATTTATTTAGCCAAGAAAATATCAAATTTTTCTTTTCACACCTTCAAT TCTAGAAATTATTAACTCTGAATAATGCTTGTTTTATCATTTTATACAGA GGGAGAATGTTGTGAAAAGCTTCAGGGCTGGAAAGGTAAAAATTTCTCCC TGTGATGGTCGTATTATGATAGCTACCATGTTGATTAGGCTTACTGTCAT TGATGCACGGTTCTTATAGAGTAAAAGTGAGAAAACTGCATTGCTTCTAT CTATGCAAGAATTTTATAATCTTTTGAAGTTTGAAGTCTTAAGGCTGCTT AAGGTCGTAATCGTTTCTTACTTCAAAAAGGATTAAAGCCGAAAATATGA TCGCCAGCCTGTATCTTTTCCTTACTTTTAATAGATCTGGATATTGATTG CCACTGAACTAATGGGGCGTGGAATCGATTTCAAAGGCGTTAACATGGTT GTCAATTACGATTTCCCGCCCACTGCTGTCAGCTATATTCACCGTATAGG TAATTGGGCTATTCCAGAAAAAAATTGTACCCCTTATGTTGAGAACTTTT TTTAAAAGGTGACCCCCTGGATTTTTTCTTATTTTTCAGGACCCCCTTGG ATTTTTTCTCCCATTTTTTTGACAACCCAGGATTTTCAACCCGATTTTAC TGACCACCCTGGATTTTTTTCATTTGAAAAAACAAGCCCACCGTGGATTT TTTCTTTTCCAGGCCACCCTATATTTGCTATTTTTCCAGACCATCCTGGA CGTCACACCTCCTCAATATAGGGGTACATACTATTTCTGGAATAGCCCAT TTGAATTCCCACTGTCTTTTCGTTTTGTTAAGTAGTAAAATAAGGGATTC TTCGGATTTTTAAAAAGCGCTATTGCAAGTACCTTAAGAGAAGGAATTTT GGGAAGAAGAAAATCTAGTCTATTTGGCTGATTTTGGGCTGATTTGACCA AAATCCGCCAAATTGAATTCCTACCAGGCAAATTGTTGTATTCATTTTCC GAACATGTGCTTTTTCAGGCCTTAAAACAGGTTGGTTTTTCTGCCAAAAA TATCTTTCAACCGCCAAATTTAATTTCCGCTAAGCTAACTCCCAACTCAA AGCAAATACTATCTCTCTGAATGTAATTTCTTCTTTGAGCTCTTTTTGAG AACTAGCGTTTAAAGGCTCGTGTGGCTGAATTGGGAAGTTTTCTTTTTAA TATGATTTCTAGGTCGAACTGGGNCTTCCCTCTCCCCCTACCATCAATCA ATGATGAATTTCTTGCGTTATGCATTTTCGCTAAACGCTATGTTTTCTGA CTGATTTTTTTTCATTTTTCTCCTTGTATTGCTATCTAACTTTCATCATC AGGTAGGTCCATTCAGCATCTAGCTTGTTGAGTAAAACTTTTAAACTGAT CAAATTTATTTTGATAAAAAGCGGAAAAGCGTTTCACAACCTTGCAGAAT TTGACGACGCTGCGGAATTTGACAACATTAGAATAGCGGAATTTCACAGC GCTGTGGTTCTATGAATTATCCGAACTTCAATCAACTTGAATCGAGTAAA AAAAAACTCAAAAGTTAGTGCTACTTTTATGTAAAAATTTTGGCCATTTT ATGCCGGCCACAGGTCGACAGATAACGCCAAAATGTCCGGCGTAAAAAAG GACCGATAAGACATTCTTTTTCGGATAATTTTATTTCTGTTTTGATCATG TTCAGTCTAGATTTTATTTTTATTTGTGAAGTAAATTTCTCTAATCGAAT ATTTTTCTACAGGAATGCTGCAACAGATACTGTCGAACAAGAACTGGTCT TTGTTGGACAAGAATCAGGAAAACTATTGGCCATGCGTCAAATCATCTTG CGTGGTTTTCAGCCACCCGTATTAGTGTTTGTTCAGAGTAAAGACAGAGC TAAAGAGCTGTTTAATGAGTTAATCTATGACGGACTGAACGTGGATGTTA TACATGCGGACCGGACGCAGTTACAGGTACGTTAATCACCATTCAGAATA TAATTAGCTCTTTCGTCTCAGTGAAATATGTTAAGAGGCTCTTTAGTCTA AAAATTCTGCATATAATTCACTACAAAATTTCAAGAATAATTGCTGATTT GCTGTATAAAATCCAGATTATTTTAACCTTGTCTTAACCACTATAATATC GTTTTTAGGTCAAAAAGTTCATAAATTTCCTCTGTGATACAATACTCTCT ATCCTAGTTGTGTACCCGTTTTTTTATAAGAATGGTGTAAATTCCATGAT GGTGATATTCTTACCATTATTCTTAATTTTTTTGGCCATTTTCATCATGG ACATGTTATAAAGTGTATTCTTGTAAAAAAAATCTTATTAGCACAGATTA GACTAAATTATTTGCTTTTTAGGTCCGCATTATTATTATCTCGATTACTG AATATCTAAAGTTGTAGCCGCGTTTAACTGATTTATTTATTTATTGTGTG CACTGGCTTTTGATTTTAAAAATTCTTCAAGTAGGATGTTCATTAGCCCA ATTAACTTAGTCCGTATTCACATAGCGTTCTCGGTGTTTTAAGGATATTT TTATACTTTCAGATTAAGCTTGCCTTGGAATACTATGGCCTAGGTAGATA TTCAGTCACAATAAAACACCAGGTTAAACCAAGTGACTGAATCAATTTAG CTTAGATTTGTAGGCTAGATTTTCACAACAAATAAGAATCAAAAATCAAA AATACCGATTTTTTCCTCATCGCGCTTTCAATTCTTAGAAATTCACTAAT TCTGAAAAATACGCATTTTATTCATCATTTTACAGAGGGAGAATGTTGTG AAAAGTTTCAGAGCTGGAAAGGTAAATTTTTTTCTTTCTGTGATGTTCGG TGTTGTGTTTACTAAACTGTAGCCAAGTGGGAATCCAAGTGATAAACTTT GTTCACGGTCTAGCTTTTTGTAGATTTTTGTTGCTGTTTTACCGCTTGGG GCAGGTAACTCGCCAGTAGGGAGATTTCCCCCTGCAATGAAGGTCGGGGC TGAGACCATGTTCACACGTTGTAAACCGTTCCGTTTTGCTCCGGGACGAT TTTCGTTACGGATGAGTGTGTTCATATTGGTTTCGGAACGTTTCGGAGCA AGAAAACGGAGCAGTTCTATTCCGATGAAATTAGCGGAGTGAAACCGTTT CGACATGTCTTGCTTTGTAACGTCTTCTTTTTTGACGTTTCGAATTTTGA CGTTCACACTTGTTTTGGAATCGTTTCGTTTCGTTTCGAAACGGAGCCGT AACGTCTGAACATGGTCTGATTTGTCGGATTTTGACGTATTTCGGCAGTC CTTTCGCGCCTATTGATCATTTTTTTATATTTGAAATTTAAAAATTTAAA AATTCAAATCTATTTCTTTGAATAGATTTGGATCTTGATTGCCACTGAAC TGATGGGGCGTGGAATCGATTTCAAAGGCGTTAACATGGTTGTCAATTAC GATTTCCCACCCACTGCTGTCAGTTATATTCACCGGATAGGTAATTTTAT ATTCCCACTGTCTTTTTGTTTTGTTATATAGTAAAATAAGAGATTTTTCG GATTTAAAAAAAGAAAAAACAGGTTTTTCTCTTATTTAATAGCGCCTTTT GGCAAAAAATATCTTTCAACCGCCAAATTTAATTCCGGCAAGTTAACTCA AAGCAAATACCCCCTCTCTAAAATGTAATTTCATCTTTGAGCTCTTTTCG AGAACTAGCATTTAAAGGCTCGTGTGGCTGAATTGGGAAGTTTTCTTTTT AATATGATTTCTAGGTCGAACTGGGCGTGCTGGGCGAAAAGGAAGAGCCG TCACTTTTTTCACTGAAGATGACAAAATCAACCTCCGAAGGTACCTCATT TTTAGTATGATTAACCTTTTTTTTACTATGGATTTTTCGAATTACCTTTG CTAAAGAAGAGGCGTTTTTGCAATAAGTATCTCAAAAATCAAAAGGCGTA TTCTTCTGGGGCTCAAATCATGTTGAATAGTTCACTGAATCTTGATAGGA CGTAACCGCTGCATTTTCGCCTTGGAATATTATAGCTACTTTTTGAGTTA CGTTTTGTAGTTTCATAACAATTTTACATACCCTCCCCCTGGATATTTCT TTAGTGAGTTTATGTATTTGCACTTTTGAAGACGGTAAATTGACTGAAGC CCGCAGCTCTGACCCGCAAAATGGAGGACAATAAAAGTGCTGCAGCTCTG ACCTGCAAAATCGAGGACTGTAAGAGAACTGATTCAACGTCGTCCCCAAT CAGTCAGGATGCAGTCAAATTAGAACATTACCGTCTCCATCGCTGAAAAC ACACAAACATAAACTCTGTTATATTATTTCTAAAGACGCCCACAAGTAGC CTCAATCCTTTACAAACTGGCTTTTCCTTGTTATCTTTTCCAGCATTGCA AATGTGATGAGATCATCAGGCTGTGAAATCCCCGAATGGATGCTCCAAAT CAAAAACCCTAACAAGTATTTCCTCTCGCATTTCTTTATTGTATCAGTAC TTCTTAGCAATGAAGTATAAACTCGAAGGGGTAGAATCCAATCTCCTTGG TAGGGTTTGAAGTCACTTAAATCTTGCCAAAGTTGCGCGATCTTGAGCGT TCCGTGTGGTTTTGATACAATAATTCGGGATTGAAAGTAAAATTTTCTGC TAGTTTTCAAAAAATATACCACTCGAAAACAAAGAAATCGCCAAATCCAA TCGATAATAAAAAATACGGCGTATATTTTAAGGCTTAACTTTTTCTTGCC TGAGAAAGGTTAAAGATTCGATTCTAACCCTTCGGACTTATACTTCATTG CTCCCTAGTAACCTCGACATTGTTTACCTCCAAACTCTTTATCCTGTTTC TTTTTTTATATTGTGGTTTAAAACCCTTGCTATCAGTACCACCAGCACCG GTTTAGTTTCACTTATCAATAACACGTGGGTTGCAAAATTATATCGGTGC AGTCAAAACATGTGATTTCTCGAAAAAGTTCACGTGATTTCATTCCCACG TTGCTTGCTTTACAACTTACAGTTAATTACTTTGTTAGTAAAAATTCTAA CCAATAAATGTCACGTAACAAGCACTTAAAAATTTCGAGTAAAAGCGTGA TTTGTCTTCAAACTTTTAATTTTGCAACCTGTGTATTTGCAGTTGTATAT GATTTTTATCGTGAAAACTAGACTGGGCTGAAAATGTTCATACATGAGTA TATTTCATAGAGGTCAGAATTCTCATGTCAGGGATCCACAATGTTATATT ATATATCCTCCAACATCCATTTTTTTTCTAGAAAAACCCATTGTGGAAAC TTGTGAAAAGCCTCTTATTTTTTTAATAGAATCTTTCTATCCAAGCTCGC TGAGTGCTCAATCATATCATCTTAAAACTCTCTTATAGGAGAACAAAAAA GAAATTATCGAAGAACCCCATAGAACGTGACCAAATCAAAACATCTTCAA AATATGATATCCAAAAATCTAAACAACGGAAGTGAGTAAATGTTTTTAAA TTATGGATCTCCCAACGATCTCTCTAAAATAAAGTCTGGAATGGACGTCC GCGACAACTTTCGTAGCTCCGGTAACCATTTTGAGATACAGTCTAATCCA TTCTAATAATAAGATTTTTCTATTATTCTGAGATACTGGGTCAGCTTCAC TTTTAATAGAAATTGCTTCGGAAATCTTTATTCCAATGTGTATTTTAAAG TTCAATGTCCCTTTATGATGGACTCTGTTAAAATGTACAGTGTGAAATTT TAGCTCCTTATTCATAATCTGAATTCAAAATTGACGACAAATGTTTGATA AAAATATTTTTATTTCGTGCATAACTTTACTCTCGAAACTTGTTGCACTT TTATAAGTTATCACTTCATAGAATGGCTAAAATTAAGAGTGCTATAAGAA TGTTTATACCATCTTGATTTTAAGTCAAAACAATGACTTCTTTTGAGATC TTGATTTAATTGGCAATGCAAATTTATTTTCTCCAGGCAAATGATCGAAC ATTCAAAAACAAAGAAGAAAGATAACGAAGAACCATCAACTAAAGACACT GATGGAAAATGAAAGTGGTTTTCTTAAAGTCAATTTTATTTTTTGTAATC ATTTTATTTTAGGCCAATATCAAAATTCAATAAGAAAGCAAACAACTAAG AATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036717XLOC_036717Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058285-exon-scaffold_309-1575043694:414294..414453TCONS_00058285-exon-scaffold_309-1575043694:414294..414453Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:413510..413768TCONS_00058285-exon-scaffold_309-1575043694:413510..413768Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:412608..412771TCONS_00058285-exon-scaffold_309-1575043694:412608..412771Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:412050..412135TCONS_00058285-exon-scaffold_309-1575043694:412050..412135Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:411601..411697TCONS_00058285-exon-scaffold_309-1575043694:411601..411697Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:410909..410989TCONS_00058285-exon-scaffold_309-1575043694:410909..410989Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:409860..409922TCONS_00058285-exon-scaffold_309-1575043694:409860..409922Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:409311..409416TCONS_00058285-exon-scaffold_309-1575043694:409311..409416Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:409115..409187TCONS_00058285-exon-scaffold_309-1575043694:409115..409187Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:408391..408460TCONS_00058285-exon-scaffold_309-1575043694:408391..408460Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:407953..408086TCONS_00058285-exon-scaffold_309-1575043694:407953..408086Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:407173..407386TCONS_00058285-exon-scaffold_309-1575043694:407173..407386Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:406569..406604TCONS_00058285-exon-scaffold_309-1575043694:406569..406604Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:406205..406319TCONS_00058285-exon-scaffold_309-1575043694:406205..406319Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:402864..402939TCONS_00058285-exon-scaffold_309-1575043694:402864..402939Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:402239..402310TCONS_00058285-exon-scaffold_309-1575043694:402239..402310Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:401223..401315TCONS_00058285-exon-scaffold_309-1575043694:401223..401315Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1575043694:400550..400717TCONS_00058285-exon-scaffold_309-1575043694:400550..400717Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:414294..414453TCONS_00058285-exon-scaffold_309-1510915933:414294..414453Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:413510..413768TCONS_00058285-exon-scaffold_309-1510915933:413510..413768Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:412608..412771TCONS_00058285-exon-scaffold_309-1510915933:412608..412771Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:412050..412135TCONS_00058285-exon-scaffold_309-1510915933:412050..412135Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:411601..411697TCONS_00058285-exon-scaffold_309-1510915933:411601..411697Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:410909..410989TCONS_00058285-exon-scaffold_309-1510915933:410909..410989Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:409860..409922TCONS_00058285-exon-scaffold_309-1510915933:409860..409922Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:409311..409416TCONS_00058285-exon-scaffold_309-1510915933:409311..409416Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:409115..409187TCONS_00058285-exon-scaffold_309-1510915933:409115..409187Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:408391..408460TCONS_00058285-exon-scaffold_309-1510915933:408391..408460Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:407953..408086TCONS_00058285-exon-scaffold_309-1510915933:407953..408086Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:407173..407386TCONS_00058285-exon-scaffold_309-1510915933:407173..407386Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:406569..406604TCONS_00058285-exon-scaffold_309-1510915933:406569..406604Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:406205..406319TCONS_00058285-exon-scaffold_309-1510915933:406205..406319Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:402864..402939TCONS_00058285-exon-scaffold_309-1510915933:402864..402939Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:402239..402310TCONS_00058285-exon-scaffold_309-1510915933:402239..402310Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:401223..401315TCONS_00058285-exon-scaffold_309-1510915933:401223..401315Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1510915933:400550..400717TCONS_00058285-exon-scaffold_309-1510915933:400550..400717Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:414294..414453TCONS_00058285-exon-scaffold_309-1491911889:414294..414453Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:413510..413768TCONS_00058285-exon-scaffold_309-1491911889:413510..413768Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:412608..412771TCONS_00058285-exon-scaffold_309-1491911889:412608..412771Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:412050..412135TCONS_00058285-exon-scaffold_309-1491911889:412050..412135Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:411601..411697TCONS_00058285-exon-scaffold_309-1491911889:411601..411697Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:410909..410989TCONS_00058285-exon-scaffold_309-1491911889:410909..410989Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:409860..409922TCONS_00058285-exon-scaffold_309-1491911889:409860..409922Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:409311..409416TCONS_00058285-exon-scaffold_309-1491911889:409311..409416Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:409115..409187TCONS_00058285-exon-scaffold_309-1491911889:409115..409187Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:408391..408460TCONS_00058285-exon-scaffold_309-1491911889:408391..408460Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:407953..408086TCONS_00058285-exon-scaffold_309-1491911889:407953..408086Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:407173..407386TCONS_00058285-exon-scaffold_309-1491911889:407173..407386Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:406569..406604TCONS_00058285-exon-scaffold_309-1491911889:406569..406604Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:406205..406319TCONS_00058285-exon-scaffold_309-1491911889:406205..406319Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:402864..402939TCONS_00058285-exon-scaffold_309-1491911889:402864..402939Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:402239..402310TCONS_00058285-exon-scaffold_309-1491911889:402239..402310Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:401223..401315TCONS_00058285-exon-scaffold_309-1491911889:401223..401315Clytia hemisphaericaexon
TCONS_00058285-exon-scaffold_309-1491911889:400550..400717TCONS_00058285-exon-scaffold_309-1491911889:400550..400717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:400550..414453 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.0774 36.1503 9.77922 8.64091 9.75613 7.09359 15.9809 17.5115 7.62654 10.3193 7.88242 5.61591 7.21101 7.10964 5.01046 8.8554 7.27752 7.50555 0.901651 2.48681 6.33859 6.40464 26.0192 19.8916 16.7182 17.2241 5.5484 4.57815 15.5637 21.9337
Blast
BLAST of TCONS_00058285 vs. Swiss-Prot (Human)
Match: DDX52 (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=3)

HSP 1 Score: 531.946 bits (1369), Expect = 0.000e+0
Identity = 272/476 (57.14%), Postives = 367/476 (77.10%), Query Frame = 2
Query:  515 EQQEKTKSEKQTREKLIEQQKEKINILRKQHRITVHGADIPDPIESFSDL-KRFKVSQTLLKNLQGNSYEEPTPIQMQAIPILIQQRELLACAPTGSGKTLSFIXXXXXXXXXXXXCGLRAVVVSPTRELAQQIHREFVRMNEGLGLKIHVLTKAK--ASTIANSKTNHFDILVATPNRLVHLLQQDPPALQLSSVEWLVLDEGDKLFEEGDAGFRDQVAAIFQACDNPQIRHTLFSATLANNVEEWSKLHLDNVIRINIGARNAATDTVEQELVFVGQESGKLLAMRQIILRGFQPPVLVFVQSKDRAKELFNELIYDGLNVDVIHADRTQLQRENVVKSFRAGKIWILIATELMGRGIDFKGVNMVVNYDFPPTAVSYIHXXXXXXXXXXXXXAVTFFTEDDKINLRSIANVMRSSGCEIPEWMLQIKNPNKRTKKKLSKNPIERDQIKTSSKYDIQKSKQRKQMIEHSKTKKK 1933
            E ++  +  K T  KL   +KEKIN LR +H+I V G D+PDPI +F  L + +K++  LL+N+    ++ PTPIQMQAIP+++  RELLA APTGSGKTL+F +P+L  LK+P   G RA+++SPTRELA QIHRE ++++EG G +IH++ KA   A       +  FDILV TPNRL++LL+QDPP + L+SVEWLV+DE DKLFE+G  GFRDQ+A+IF AC + ++R  +FSAT A +VE+W KL+LDNVI ++IGARN+A +TVEQEL+FVG E+GKLLAMR+++ +GF PPVLVFVQS +RAKELF+ELIY+G+NVDVIHA+RTQ QR+N V SFRAGKIW+LI T L+ RGIDFKGVN+V+NYDFP ++V YIHRIGRTGRAG KG+A+TFFTEDDK  LRS+ANV++ +GC +PE++   +    + KKK+ K P+ER+ I T+ K  ++K+K +++ +    +KKK
Sbjct:  117 EDKKVQRESKLTSGKLENLRKEKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPKCFLEKAKDKQKKVTGQNSKKK 592          
The following BLAST results are available for this feature:
BLAST of TCONS_00058285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX520.000e+057.14Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]
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