TCONS_00058277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058277
Unique NameTCONS_00058277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058277 ID=TCONS_00058277|Name=TCONS_00058277|organism=Clytia hemisphaerica|type=transcript|length=2370bp
TGTAGACGGGCTTTTAATTATTTGATAAATCGCAGGAATCAGCacaaaat
tttgtaaacatcACTTTGCAAATCTACGCCCGAATCGAAGGTTTTGGAAG
GACaaatttctggaaaaaaaaTTACCAATATGGCTTCAAAAGGACGAGGA
AGCGATGACTCTACCAGTATTTACAGAATTCCACCATATTATTACATTCA
CATTCTCGACCAAAATACCAATGTCACCTCTGTTGAAGTTGGTCCAAAGA
CCTACATCCGTCAAGACAATGAGAAAGTTGTCTTTGGACCCCAGCAAATG
ATCACTATCCCTCCAAGACACTATTGTGTTATTGAAAACCCTGTGTCAAT
CGATGCTGAAGGCAAAGTTATTTTCGATGAAAATGGTCAAGCTAAATTGA
AACATGCTGACTTGgAAATCAGACTTGCCCAAGACCCATTTCCATTATAC
CCTGGAGAAACTTTGAAGAAACCAAAAACACCTTTACAAGTTGTTCCAGC
TAACTCAGCTTTACGTTTGAGAGCTCTCCTTGATTTCACAAGTGATGCAA
AAAAAGATTACGTTGCTGGTGATGAATGGCTTTTCGAAGGGCCTGGAACC
TATATCCCAAGAAAAGAAGTTGAAGTTGTTGAAACTATTAGGGCTGTTAT
CATCAAACCTAATCAAGCCATCAAATTGAGAGCACGAAAAGAAACTTTGG
ATCGCGAGAGTAACCCACGTGTGACAGGTGAGGAATGGGTTGTCAAAAAG
ACTGGTGCTTATTTACCCGGGGCATATGAAGAAGTTGTCGAAATTGTTGA
TGCTTATGTGTTGACAGACAAAGTTGCATTACATATGAGAGCAACACGAA
CAttcaatgatgaaaaattgaaaaagacacGAAAAAATGGTGAAGAATGG
TTGATCTCACTTGAAGATACTGAAACACATATCCCAAACGTCTATGAGGA
GGTGGTTGATGTGGTCAACATTACAACATTAAACAACCGTCAATACTGTA
TCATTTGTGATCCTGTTGGAGCCGACGGTAAACCACAACTTGGTCAAAAG
AAATTAGTCAAGggtgagaaatcatttttcttGCAACCAGGAGAACGTTT
TGAGAAAGGCACTCAAAACGTGTATGTTCTTGGTGAGGATGAAGGTTTGA
TTCTCAAAACGACCGAAGAATTTATGGATGGAAAAGAGAAGCGAGCTCCT
GGTGATCGATGGATGATCAGAGGTCCACGAGAATACGTACCACCTGTTGA
GGTCGAAGTGACCAGTCATCGTAAAGCAATTCCACTGGATGCAAACGAAG
GTGTTTACGTTCGAAACATCAAGACCGGTCAAGTGCGTGCTGTGGTTGGT
CAAACCTACATGTTAGATCAGGATGAAGAACTGTGGGCCAAAGAATTGCC
ACCTGTCGTCGAGGACTTGTTAGCGCAAGGTAAAGACCCACTCGCTGACC
GAAGCGAGCGTGGATCCAAGGGAGCAAGCAAGGCAAGAgacaaaacgaaa
gtggttgTTTTCCGCGTGCCCCACAATGCTGCAGTGCAAATCTATGATTA
CAAAGACAAGAAAGCCAGAGTCAACTTTGGACCTGACCTTGTCATGCTTT
TACCCGACGAACAATTCACCGTCTTGAGCATTTCTGGTGGAAAACCAAAA
CGACCAAATGTAATCAAAGCCTTATGTCTATTACTGGGCCCAGACTTCTG
TACTGATATCGTTGTCGTGGAGACGGCTGACCACGCCCGATTGTCACTTC
AATTGTCATACAACTGGCATTTCGCACACGAAGCAAAAGACGGTGCTCGA
TTATTCTCTGTTCCTGATTTCATCGGAGATGCGTGCAAAGCAATCGCCTC
CCGTATCCGTGGTGCCGTCGCTTCCGTAAAATTCGACGATTTCCACAAGA
ATTCCGCTAAAATCATCCGCGCATCCGTTTTTGGATTAGACGAGAAAAAT
AAAGTGCGTGAGAAATTTACTTTCCCAGCTAACGGGTTAAACATTACCAG
TGTGGATATTCAGTCTGTCGAGCCTGTTGATCAACGTACCCGAGATGCTT
TGCAGAAATCTGTTCAATTGGCTATCGAGATTACGACAGCCTCACAAGAA
GCCTCTGCTAAGTAAGaagatttcttctttttgttctttCTTTCCGTTTG
TGTATCCCGATCACAGACCTTTATATAAACTATATTTATAtaccaaaatc
tttgatcggagatCTGCGTTccctcgaatacttttgatgatataGCGCCG
TTAGAGGTTAATTGTCAACACTGCAAAGGCGTCTTTAAGGATACCgggaa
gcgatttggaataactcCACAGTTTTGACCTGGAAAATCGAGGActgtaa
aagtgctgatttactaTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_309:275226..284519-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058277 ID=TCONS_00058277|Name=TCONS_00058277|organism=Clytia hemisphaerica|type=transcript|length=9294bp|location=Sequence derived from alignment at scaffold_309:275226..284519- (Clytia hemisphaerica)
TGTAGACGGGCTTTTAATTATTTGATAAATCGCAGGAATCAGCACAAAAT
TTTGTAAACATCACTTTGCAAATCTACGCCCGAATCGAAGGTTTTGGAAG
GACAAATTTCTGGAAAAAAAAGTAAGTAAATTTACTACATATTGCACCAC
ATAATACAAGGTTTCACCACTTACTTTAGGGTCAGAATAGTATAAAAACC
TTCTGAAGATTTGAAAAAGTATCTGGGCAGAGATGGATGAATAGAGGTTG
ATGAGAAATTGAAAGGAAATTTACTTGATGTTTGATTGACAATATATATA
CTTGGTCCTATATACTATCTCTCAACTTAAAAGAAAGAAGCTTGTTTTTA
TTTTTTATACAAACATTATGAACACTTCAGAAAACACCATATGAAACTAG
GTTTGAGTTTCTAAAGCAAGAAAAATAGCTGTCTTTTATATGTCGCAAAG
CAAGGCAAAAGGTAAATGAAATAGTTTTTGTGTCTCAAAACAAATTTAAC
GGATGAGTGTAAGTGAGATTATGAACCCTCAACAGGGCAATTCTTGTAAG
TATTGTATAGCTTGTTCATCTTTAGATGTTTTAGGGGAGCCATCCAAGCT
CAAACTTGTGCCAAAAACAATGTTGTTGTTGATTGGGTACAAATGTATGT
ACGTACCTTGGGGGGGAGGGCCCCTTTTGGCACTAGAATGTGGACGCTAA
TTTGTGGCAAAAGATTTTCACCAAAAATCAAACTGCAACATACAGTAATG
ATCGTGTATATACCTTTAGGCACCATATGTGGACACAACTTTTTAATAAA
CTCAGCAGTAAGATTTTTAAATGGGTGGAAGCTGGTCTACTATGACCTTT
TGCTAGTCAGGATATCGTGTTGAATACCGTGAGAGGTCCCAAATCCGACA
CCACTGCCTAATTCCAACCCCCCAAATAACTGTTATGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTGTAATAAAAGTGACTTGTGCGGGAAAAATACGAAACAACTTGGGCT
GGTTTCCATCAAGAAACAAACAGACTAAATTGCAAAAATGGCGCGAATTT
GAAAAAGGGCGGATGCGGTAGCACTTAATTTGAATAACAAACATCGAATC
AACGAGGCGGCAACTATCAACGCCCTCTTTACCATCCATAAGTCTGGATG
TTTATTTACGGAAGGCCCGCAATCAAGCCAAGTGCCAGTGTAAAGTAATA
AAAACCAGGCTTGATTACGTAACGTTTCAAAATGAGCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTTTTATATTTTC
GTGTGCTTTGGAAAATCAAAACATCTCATTACTTTTTATGATGCTGTTAC
TACTGTTGTCATTTATGACGTTGTGCATATTGCAATAAGAAAATATGTTT
TGTTATAAGAAGCAATTATTGTTATTTGGTTCAATTGGTTCAGTGTGTAT
CAAATCTCTCAGTTTAGTTGACACTTTGGTATCTTCGTTGTGTCACAGCG
AAAGGTTTGTTTTTATTTTAGTTTGTATCTTTGAAAGACCCCATCGGATT
TAGGCAGTGGTGTCGGATTTAGGACCTTGCACGGTAATCAAAAAATATAC
AGCCTCAAAATAAAGAAAAATTAATGCATAATTATTATAAGTGCAAATTG
AATTTGATGCTGGAGTCTTTAATTATACAGCATGACATCATAACTAGCAA
AAGGTCTATCATTGGGTCACTACTGTAACTTGGTCTAATGTCGACACCCC
TCCTCTAACTTCGACACCCTTTTTATCAGCTGAAATTTATAGAAAGGTTG
AACTGTTTTTCTTTGCTTAGTGGTCAGAGAGGAATAATCCTTTTTCAATC
AGTAATTCAAGCTTTCATATTATTCCTTTCTCTAAAGAAGGGTGTTGGAA
TTAGACGGGGGATGTCAATATTAGACCAACTTACAGTACATATATTGTTT
TTGCTGCAAGTCTATTATGGAGTCAAAATGACATCACAGCTAGCAAAAGT
CTATGTTGCTATATGTAACAAAATTATCAATTCTTGGAATTTTTGCAAAA
AAGTTTAGAAATTATCTCTGTTAATTGTTGAATGTATACTTAGGAAATGC
AAGGCATCTGGAGATATAGCGTTATAAAGAAATAATAAATAAAGTTAGCT
GACAAAACAATGATGAATAGTTGAATATCTTGAAATTTAAGTTTTATTAC
ATGGAAATGTTATGGAAGGGGTGGGGGATTCATAAACAAAACGTCCAATC
AGCGTTTTCTGTGGCAAGATTGAGTTTGGATGGCTTTAACTGCCAAATTT
GATCTGAAAACAATATACTGTATTCTTAAATTTTGATTCCTCAGCAAATT
TCTGAATTATTATAAGGGACTTTCCTATTACTTCAAACTTTTGATGATCC
ACTCCCTGGTCATTACTGCAAAATAATCATTTTCTGAGAGAATTAGATGT
CTAAAATAGCTATAAAAGCAACTAAACACTAGGTGATGAAGTTTTATTAT
AAGATTAATGTTTTGATAGAGGACAAACTTAATTATTACAACCTTACTAC
TCTTAAAAGAGTTTTGTAACATAAAGTTTTTATAACTTTTGTTATTTCAA
GTTACCAATATGGCTTCAAAAGGACGAGGAAGCGATGACTCTACCAGTAT
TTACAGAATTCCACCATATTATTACATTCACATTCTCGACCAAAATACCA
ATGTCACCTCTGTTGAAGTTGGTCCAAAGACCTACATCCGTCAAGACAAT
GAGAAAGTTGTCTTTGGACCCCAGCAAATGATCACTATCCCTCCAAGACA
CTATTGTGTTATTGAAAACCCTGTGTCAATCGATGCTGAAGGCAAAGTTA
TTTTCGATGAAAATGGTCAAGCTAAATTGAAACATGCTGACTTGGTGAGT
CTTATTTTTTCTTTGCTTTTGAATTTTACACAATGAAAAATTAAGACAAG
ACACAATTTTTTCAATTAGTCCTTTTACGAGAAAAAGTTTGCAAAAAAAT
AAAAATTGAATTCAATCATTATCAAGGTTCAAAAACTATGTCTACCAATA
GATTGATATATTTTCAATCCTTACTTTTATGCATTGATCTTTCTTTGATT
AAAATATAAATTTTTGAGTCTTAAAAGAGCAAGAATGAGATCACAAAACT
GCATGTTAGCAAACAGCCAAAAGTGTCATGGTTTTCCTGAAAAAGGAAAT
ATTTCCCTCAGATTGTTGATTTTTTTAATCTGTCCCTTAGAAGATACACC
CCTACTCCTCAACCTCTTACTGATAAAAGATTTCTCTTCCAAATTTTTCA
TCAAATTTTTTAATTTTTTATTTTACAGGAAATCAGACTTGCCCAAGACC
CATTTCCATTATACCCTGGAGAAACTTTGAAGAAACCAAAAACACCTTTA
CAAGTTGTTCCAGCTAACTCAGCTTTACGTTTGAGAGCTCTCCTTGATTT
CACAAGTGATGCAAAAAAAGATTACGTTGCTGGTGATGAATGGCTTTTCG
AAGGGCCTGGAACCTATATCCCAAGAAAAGAAGTTGAAGTTGTTGAAACT
ATTAGGGCTGTTATCATCAAACCTAATCAAGCCATCAAATTGAGAGCACG
AAAAGAAACTTTGGTAAGGAACTCATGTATATTTCTAGTGAAAAACCATA
ATTGGCCTATTTTGAATCTGTAATTTAAGAAGTTTTTTAGGGCTCAGGTC
AATTTCATCCTGGTCTTTTCTCACAAGTTGCAAAGATGAGCTTATATTAA
AATTTGAAAAATAAATACCTTTTTTATAAAATTGACTTTACCAAAGAAAA
TGGCTGCGTTAGACTCAAAGTTGTTGTCGAATAAAAAATGATGAAATATT
CTTTAAAAGTAGAACTCTTTTACCAAAGATAAGATTTTATTATATCAAAT
TTTCTTATAAATTTCTTTTTTTCNGTAAGATGCAAGATTTTACTCTATTC
AATTTTCTTATACATTATTCTTTTCTTTCAGGATCGCGAGAGTAACCCAC
GTGTGACAGGTGAGGAATGGGTTGTCAAAAAGACTGGTGCTTATTTACCC
GGGGCATATGAAGAAGTTGTCGAAATTGTTGATGCTTATGTGTTGACAGA
CAAAGTTGCATTACATATGAGAGCAACACGAACATTCAATGATGAAAAAT
TGAAAAAGACACGAAAAAATGGTGAAGAATGGTTGATCTCACTTGAAGAT
ACTGAAACACATATCCCAAACGTCTATGAGGAGGTAAAATGGAAATTATT
TTTCACAGTAAACATTAAACTTTAATGTCACAAGTCATAGATGAGACCTT
GGAGGGTTGTTTTTACCAATAAAGAGATGGTCACCCCTTTCTGTAGTATA
ACAAATGATGGAACCAGTTTTTTATTCCACTTTCCCCCTTTGTTAATTAC
TTTTAATAATAGTCGACCACCTTGCACTGGTAACTGATGGTATATAGATA
GCCAAAGGNACTTTTAATAATAGTCGACCACCTTGCACTGGTAACTGATC
GTATATAGATAGCCAAAGGAAGCATGCTATGGTCTTTGACTAAAGATATA
AATTGGAGCTCATTTTCTAACCTCCTCTATCAAACTTTTCTGCCTTCCTG
ATCTTGACTTGTAGTTATTTCATAATGAAGCATACTTGCAATTAAAACTG
AATGAAAAATAGTAGAAATTTGAACAAAAATTGTAAAGAAATGTGATCAT
TATTAAACTATTATTGACTATTTTTCAAATTTTACTCCACTCTGGTATCT
TGTTTGTTCATCACCGAGCACCTGTTCAATATAATTCCATGGCAATGATT
TATAGCATTTCCCAGGTGGTGGATGTGGTCTATCGAACTTTTCTGCCTTG
CTAATCTTGACTTGTTGTAATTTTATAATGAAGCATACTTGCAATTAAAA
ATGAAAGAAAATTTGTAGGAATTTTAACGAAAATTGAATTATTGATATTT
CCCAGGTGGTTGATGTGGTCAACATTACAACATTAAACAACCGTCAATAC
TGTATCATTTGTGATCCTGTTGGAGCCGACGGTAAACCACAACTTGGTCA
AAAGAAATTAGTCAAGGTGAGTTTTGAGAATTTCTTGATTTTTTGACTAG
TGGTGAAAAGAGGTGGATTTGAGTTAAGTCTTCACTAATTGTATCAATAT
TTGGGTTTTATAAACATCTTTATTTTACACTTTGCCTTGTTGATAAAAAG
GCCTAATTTGAAAAGATATTACGGTAAGGTCTTCACTTTGCTTCCTCTAG
GATTTTAAATGTCTTTATTTTACATTTTGCCTTGGAATCAATAATTCTTT
CTAATTCTAGAAATAAAGAACTAACTTACGATTGATGTATGCAGTTTTCA
TGCAATGCAGCCTATAGTAGACTCCAAATTAAAATTGAAATCATCCAATA
TTGACATTTCATACATAAATTTTCTTCTTCTTTTCTTCAGGGTGAGAAAT
CATTTTTCTTGCAACCAGGAGAACGTTTTGAGAAAGGCACTCAAAACGTG
TATGTTCTTGGTGAGGATGAAGGTTTGATTCTCAAAACGACCGAAGAATT
TATGGATGGAAAAGAGAAGCGAGCTCCTGGTGATCGATGGATGATCAGAG
GTCCACGAGAATACGTACCACCTGTTGAGGTTTGTCATTCACATGTTTTT
ATAAGAACAAACTATATAAGAACATAAGGCTTCGATGGCCCAAATATTAA
GAACAAGTTAAGAACAAGTTAAGAACATGTTCAGGCTTTGTAGACCCGAT
TTTTTACGAAGATATTAAAAAAAAATACTCTCAAAATGATGAAAACAAGA
ACATTTCAAGAACATTTTAAAGCTTAGAAAACAAAAAACAAAGAACACTC
GAAGGCTTCCAAATGTTTGAACGTTCTTATAAAAGGAACATGTATGTTTA
ATTGTCTAGAGAGACGAATTGAATGAATTTGTCAATGAAGGTGACAAAAC
CACGTTAAGTTTGTTTCCATGATCATACATTCACCGGCTCGAGAACAAAG
CAGAAGGGTGCCTTCATCCATGCCAACACAGCAGGGCCTCCTGGAGGTCC
AGGAAAAGTCTTAAAAGAACCGGAACGAGATGGAGTTTTTACAAGCTCTT
ATTTGATTACCAACCAAATCAAATAAGAGCTTGTAAAAAATCCATCTCGT
TAACCAGTAATAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCATTC
TTATTACTTCAAATGACCAATTATTAAAGTATCTTATAAAAACTCCATCT
CATCTGTTTTATCCAGGTCGAAGTGACCAGTCATCGTAAAGCAATTCCAC
TGGATGCAAACGAAGGTGTTTACGTTCGAAACATCAAGACCGGTCAAGTG
CGTGCTGTGGTTGGTCAAACCTACATGTTAGATCAGGATGAAGAACTGTG
GGCCAAAGAATTGCCACCTGTCGTCGAGGACTTGTTAGCGCAAGGTATGG
AGAGTACTTTTTCCATATTTGACATATCTTTATCTCTAAATTCTAATCTT
CTAAATTTATGTCTCTTTAAAACTAGCCTCGATTTCACTTGAGATTTTGA
TTAAATGAATGTTAAAAGTACACCAATTCATGATATTCATGACGTAGTGT
TTTCTACGGAAAGACCCTGGTTTTTGCCTGTAGTGGCAAATTTTATACAA
CTTTTGTCTAGTTTAAAGTTGCCACTACTGGCTAAAACCGGGGTATTATC
GTAGAGAAAATTACGTCATGAATATCATGAATGGGCTCGTGCTAAATTGG
TAAACAATATCAAAAAGCAAAGTTCAGTCACAAATAGACTCTAGTCAACT
CAAAAACTATACTTTTGAAATTAGAGGTTATCGGGATCTATCTATCTACA
TTTTCATGATATATTTAGTTAACGATGATAGATCGCTAACCGCTTTCGCT
TTGTATAACAGTCTGTTCCTCTAAAGAATCCTGCATTGTAACACGCATGC
GTAATTTGTCGTTCTTTTAAACCATATGTAGTTAATTCCCGTGATAAACA
AAGGAATAAATCCGCAGGGGTGGTTGTGGACGGTGAAATTTGTCGTTCTT
TTTGTCTATTTTTAGTAATGCAGGATTTGATACATGGACCCCCTCATAAT
GTGCAAACTACGTAATTTATTGATAATGTTTTATCATTTTTTCTTATAGG
TAAAGACCCACTCGCTGACCGAAGCGAGCGTGGATCCAAGGGAGCAAGCA
AGGCAAGAGACAAAACGAAAGTGGTTGTTTTCCGCGTGCCCCACAATGCT
GCAGTGCAAATCTATGATTACAAAGACAAGAAAGCCAGGTAAATGAAATC
CCCATCGCTAAAAAAATACTCCTATTATACACAGGCACGAAGAAGCAGCT
CTTAAATAGTGATTATTTGAGCTGACATGATATTTTTTTCAAACTCGCCA
ACATTGCCAATTTCTTGAAAAGTTCCCCTAAGCTTAAAAATCTTGAAGCC
GTTTTTTGAAATGTAGTTGAAATATTTTTACTAAATATTTCCCTTTCCCG
AAAAAAACGGCCTTTCAAAGCTTACTACATTGGCGTCTCTTTAACTCGAA
CCTCTGTAACTCGAGTGTCTCCTTAATTCAAACAAGTTTTATGGCTCATT
CAAACAGTTAACAATGCCTCTTAAACCTTTACTCCGTAACTCAAACAAAT
TTTCGTATTGTACATTAGCTTATGTGCTTTGAATTTCTTCTTGCAGAGTC
AACTTTGGACCTGACCTTGTCATGCTTTTACCCGACGAACAATTCACCGT
CTTGAGCATTTCTGGTGGAAAACCAAAACGACCAAATGTAATCAAAGCCT
TATGTCTATTACTGGGCCCAGACTTCTGTACTGATATCGTTGTCGTGGAG
ACGGCTGACCACGCCCGATTGTCACTTCAATTGTCATACAACTGGTAAGT
GGTTATTTCTCTACTATTCTTTGTTTTAGTTTTTAAGGGGTTTTGTATTG
TTTTTGAAAAGCTGACGAATGAAGAATAAATTTTGGATTCTAGGCCAATG
AATTCTTAGCAAGCCCAATCATTATCAGCGTGGATATAAACTTTAGGATG
CGAGCTGACAAATTGTTATTCTTTTCATGCTTAGGACCGGCAAAATTCGC
TGTTCGCCGTGCCTGAAATTGATAAGATTACTCTCTATAATTCGAATTTT
TCTCTGATTCGAAGAATTTTTTGGTCCCTTGAAGATCGAATTAGAGAGAG
TCAACTGTATGTAAATTAGTTTTTCACCGTTATTTAACAGGCATTTCGCA
CACGAAGCAAAAGACGGTGCTCGATTATTCTCTGTTCCTGATTTCATCGG
AGATGCGTGCAAAGCAATCGCCTCCCGTATCCGTGGTGCCGTCGCTTCCG
TAAAATTCGACGATTTCCACAAGAATTCCGCTAAAATCATCCGCGCATCC
GTTTTTGGATTAGACGAGAAAAATAAAGTGCGTGAGAAATTTACTTTCCC
AGCTAACGGGTTAAACATTACCAGTGTGGATATTCAGTCTGTCGAGCCTG
TTGATCAACGTACCCGAGATGCTTTGCAGAAATCTGTTCAATTGGCTATC
GAGATTACGACAGCCTCACAAGAAGCCTCTGCTAAGTAAGAAGATTTCTT
CTTTTTGTTCTTTCTTTCCGTTTGTGTATCCCGATCACAGACCTTTATAT
AAACTATATTTATATACCAAAATCTTTGATCGGAGATCTGCGTTCCCTCG
AATACTTTTGATGATATAGCGCCGTTAGAGGTTAATTGTCAACACTGCAA
AGGCGTCTTTAAGGATACCGGGAAGCGATTTGGAATAACTCCACAGTTTT
GACCTGGAAAATCGAGGACTGTAAAAGTGCTGATTTACTATCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036710XLOC_036710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058277-exon-scaffold_309-1575043694:284399..284519TCONS_00058277-exon-scaffold_309-1575043694:284399..284519Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:281176..281468TCONS_00058277-exon-scaffold_309-1575043694:281176..281468Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:280457..280741TCONS_00058277-exon-scaffold_309-1575043694:280457..280741Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:279837..280088TCONS_00058277-exon-scaffold_309-1575043694:279837..280088Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:279004..279114TCONS_00058277-exon-scaffold_309-1575043694:279004..279114Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:278441..278629TCONS_00058277-exon-scaffold_309-1575043694:278441..278629Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:277626..277803TCONS_00058277-exon-scaffold_309-1575043694:277626..277803Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:276782..276920TCONS_00058277-exon-scaffold_309-1575043694:276782..276920Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:276176..276373TCONS_00058277-exon-scaffold_309-1575043694:276176..276373Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1575043694:275226..275829TCONS_00058277-exon-scaffold_309-1575043694:275226..275829Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:284399..284519TCONS_00058277-exon-scaffold_309-1510915933:284399..284519Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:281176..281468TCONS_00058277-exon-scaffold_309-1510915933:281176..281468Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:280457..280741TCONS_00058277-exon-scaffold_309-1510915933:280457..280741Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:279837..280088TCONS_00058277-exon-scaffold_309-1510915933:279837..280088Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:279004..279114TCONS_00058277-exon-scaffold_309-1510915933:279004..279114Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:278441..278629TCONS_00058277-exon-scaffold_309-1510915933:278441..278629Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:277626..277803TCONS_00058277-exon-scaffold_309-1510915933:277626..277803Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:276782..276920TCONS_00058277-exon-scaffold_309-1510915933:276782..276920Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:276176..276373TCONS_00058277-exon-scaffold_309-1510915933:276176..276373Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1510915933:275226..275829TCONS_00058277-exon-scaffold_309-1510915933:275226..275829Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:284399..284519TCONS_00058277-exon-scaffold_309-1491911889:284399..284519Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:281176..281468TCONS_00058277-exon-scaffold_309-1491911889:281176..281468Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:280457..280741TCONS_00058277-exon-scaffold_309-1491911889:280457..280741Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:279837..280088TCONS_00058277-exon-scaffold_309-1491911889:279837..280088Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:279004..279114TCONS_00058277-exon-scaffold_309-1491911889:279004..279114Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:278441..278629TCONS_00058277-exon-scaffold_309-1491911889:278441..278629Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:277626..277803TCONS_00058277-exon-scaffold_309-1491911889:277626..277803Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:276782..276920TCONS_00058277-exon-scaffold_309-1491911889:276782..276920Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:276176..276373TCONS_00058277-exon-scaffold_309-1491911889:276176..276373Clytia hemisphaericaexon
TCONS_00058277-exon-scaffold_309-1491911889:275226..275829TCONS_00058277-exon-scaffold_309-1491911889:275226..275829Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:275226..284519 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18671	0.798478	1.11305	0.179689	0.413003	0.354783	0.661047	0	0.157852	0.139653	0	0	0	0	0.340676	0	0.392904	0.136297	1.0186	0.221168	0.826974	0	0	0	0	0.258904	0.492478	0	0.188116
Blast
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BLAST of TCONS_00058277 vs. Swiss-Prot (Human)
Match: MVP (Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4)

HSP 1 Score: 850.507 bits (2196), Expect = 0.000e+0
Identity = 419/659 (63.58%), Postives = 522/659 (79.21%), Query Frame = 1 
Query:  205 LDQNTNVTSVEVGPKTYIRQDNEKVVFGPQQMITIPPRHYCVIENPVSIDAEGKVIFDENGQAKLKHADLEIRLAQDPFPLYPGETLKKPKTPLQVVPANSALRLRALLDFTSDAKKDYVAGDEWLFEGPGTYIPRKEVEVVETIRAVIIKPNQAIKLRARKETLDRESNPRVTGEEWVVKKTGAYLPGAYEEVVEIVDAYVLTDKVALHMRATRTFNDEKLKKTRKNGEEWLISLEDTETHIPNVYEEVVDVVNITTLNNRQYCIICDPVGADGKPQLGQKKLVKGEKSFFLQPGERFEKGTQNVYVLGEDEGLILKTTEEFMDGKEK----RAPGDRWMIRGPREYXXXXXXXXTSHRKAIPLDANEGVYVRNIKTGQVRAVVGQTYMLDQDEELWAKELPPVVEDLLAQGKDPLADRSERGSKGASK---ARDKTKVVVFRVPHNAAVQIYDYKDKKARVNFGPDLVMLLPDEQFTVLSISGGKPKRPNVIKALCLLLGPDFCTDIVVVETADHARLSLQLSYNWHFA----HEAKDGARLFSVPDFIGDACKAIASRIRGAVASVKFDDFHKNSAKIIRASVFGLDEKN----------KVREKFTFPANGLNITSVDIQSVEPVDQRTRDALQKSVQLAIEITTASQEASAK*E 2118
            LDQN+NV+ VEVGPKTYIRQDNE+V+F P +M+T+PPRHYC + NPVS DA+G V+FD  GQ +L+HADLEIRLAQDPFPLYPGE L+K  TPLQVV  N+AL L+ALLDF        VAGDEWLFEGPGTYIPRKEVEVVE I+A II+ NQA++LRARKE  DR+   RVTGEEW+V   GAYLP  +EEV+++VDA +LT+K ALH+RA R F D +   +R+ GEEWL++++DTE H+P+V+EEV+ VV ITTL    YC+I DPVG DGK QLGQK++VKGEKSFFLQPGE+ E+G Q+VYVL E +GL+L+  +   +G+++       GD W+IRGP EYVP  +VEV   R+AIPLD NEG+YV+++KTG+VRAV+G TYML QDE LW KELPP VE+LL +G+DPLADR E+ +  + +    R+KT+VV +RVPHNAAVQ+YDY++K+ARV FGP+LV L P+EQFTVLS+S G+PKRP+  +ALCLLLGPDF TD++ +ETADHARL LQL+YNWHF      + ++ A+LFSVPDF+GDACKAIASR+RGAVASV FDDFHKNSA+IIR +VFG +             + R++  FP NGL ++SVD+QSVEPVDQRTRDALQ+SVQLAIEITT SQEA+AK E
Sbjct:   19 LDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFR-GVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHE 676
The following BLAST results are available for this feature:
BLAST of TCONS_00058277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MVP0.000e+063.58Major vault protein OS=Homo sapiens GN=MVP PE=1 SV... [more]
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