TCONS_00058276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058276
Unique NameTCONS_00058276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2836

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058276 ID=TCONS_00058276|Name=TCONS_00058276|organism=Clytia hemisphaerica|type=transcript|length=2836bp
GGTTCTCGAAAAGATTTTACAGTGTAGACGGGCTTTTAATTATTTGATAA
ATCGCAGGAATCAGCacaaaattttgtaaacatcACTTTGCAAATCTACG
CCCGAATCGAAGGTTTTGGAAGGACaaatttctggaaaaaaaaTTACCAA
TATGGCTTCAAAAGGACGAGGAAGCGATGACTCTACCAGTATTTACAGAA
TTCCACCATATTATTACATTCACATTCTCGACCAAAATACCAATGTCACC
TCTGTTGAAGTTGGTCCAAAGACCTACATCCGTCAAGACAATGAGAAAGT
TGTCTTTGGACCCCAGCAAATGATCACTATCCCTCCAAGACACTATTGTG
TTATTGAAAACCCTGTGTCAATCGATGCTGAAGGCAAAGTTATTTTCGAT
GAAAATGGTCAAGCTAAATTGAAACATGCTGACTTGgAAATCAGACTTGC
CCAAGACCCATTTCCATTATACCCTGGAGAAACTTTGAAGAAACCAAAAA
CACCTTTACAAGTTGTTCCAGCTAACTCAGCTTTACGTTTGAGAGCTCTC
CTTGATTTCACAAGTGATGCAAAAAAAGATTACGTTGCTGGTGATGAATG
GCTTTTCGAAGGGCCTGGAACCTATATCCCAAGAAAAGAAGTTGAAGTTG
TTGAAACTATTAGGGCTGTTATCATCAAACCTAATCAAGCCATCAAATTG
AGAGCACGAAAAGAAACTTTGGATCGCGAGAGTAACCCACGTGTGACAGG
TGAGGAATGGGTTGTCAAAAAGACTGGTGCTTATTTACCCGGGGCATATG
AAGAAGTTGTCGAAATTGTTGATGCTTATGTGTTGACAGACAAAGTTGCA
TTACATATGAGAGCAACACGAACAttcaatgatgaaaaattgaaaaagac
acGAAAAAATGGTGAAGAATGGTTGATCTCACTTGAAGATACTGAAACAC
ATATCCCAAACGTCTATGAGGAGGTGGTTGATGTGGTCAACATTACAACA
TTAAACAACCGTCAATACTGTATCATTTGTGATCCTGTTGGAGCCGACGG
TAAACCACAACTTGGTCAAAAGAAATTAGTCAAGggtgagaaatcatttt
tcttGCAACCAGGAGAACGTTTTGAGAAAGGCACTCAAAACGTGTATGTT
CTTGGTGAGGATGAAGGTTTGATTCTCAAAACGACCGAAGAATTTATGGA
TGGAAAAGAGAAGCGAGCTCCTGGTGATCGATGGATGATCAGAGGTCCAC
GAGAATACGTACCACCTGTTGAGGTCGAAGTGACCAGTCATCGTAAAGCA
ATTCCACTGGATGCAAACGAAGGTGTTTACGTTCGAAACATCAAGACCGG
TCAAGTGCGTGCTGTGGTTGGTCAAACCTACATGTTAGATCAGGATGAAG
AACTGTGGGCCAAAGAATTGCCACCTGTCGTCGAGGACTTGTTAGCGCAA
GGTAAAGACCCACTCGCTGACCGAAGCGAGCGTGGATCCAAGGGAGCAAG
CAAGGCAAGAgacaaaacgaaagtggttgTTTTCCGCGTGCCCCACAATG
CTGCAGTGCAAATCTATGATTACAAAGACAAGAAAGCCAGAGTCAACTTT
GGACCTGACCTTGTCATGCTTTTACCCGACGAACAATTCACCGTCTTGAG
CATTTCTGGTGGAAAACCAAAACGACCAAATGTAATCAAAGCCTTATGTC
TATTACTGGGCCCAGACTTCTGTACTGATATCGTTGTCGTGGAGACGGCT
GACCACGCCCGATTGTCACTTCAATTGTCATACAACTGGCATTTCGCACA
CGAAGCAAAAGACGGTGCTCGATTATTCTCTGTTCCTGATTTCATCGGAG
ATGCGTGCAAAGCAATCGCCTCCCGTATCCGTGGTGCCGTCGCTTCCGTA
AAATTCGACGATTTCCACAAGAATTCCGCTAAAATCATCCGCGCATCCGT
TTTTGGATTAGACGAGAAAAATAAAGTGCGTGAGAAATTTACTTTCCCAG
CTAACGGGTTAAACATTACCAGTGTGGATATTCAGTCTGTCGAGCCTGTT
GATCAACGTACCCGAGATGCTTTGCAGAAATCTGTTCAATTGGCTATCGA
GATTACGACAGCCTCACAAGAAGCCTCTGCTAAACACGAGGCTGACAGAT
TGGAACAAGAAGCACGTGGTCGTTTGGAAAGACAAAAGATCCAAGATGAA
CCGCATCTGAAAAAGCTAGACGAGAATTGTTGCAACTTCAAGCTGAAAGT
GCCGCTGTTGAATCAACTGGTCAAGCTAAAGCGGAAGCACAATCCCGCGC
CGAAGCCGCGCGCATTGAGGGCGAAGCTGCTGTACAACAAGCGCAACTGA
AAGCGGAAGCCTCCAATATCGAAGCTGCTTCCGAATTGAAACGCTTGACT
GCCGCTCGTGACGCAGAAACAAAATATATTAAGGACCAGAATGAGTTAGA
GATTAACAAGACTCAAGAACTTGCTCACATCGAGTCTGCAAAATTCAAGC
ATATGGTTGACGCTATTGGGCCAAATACGATCCAATCGATCGCCACTGCA
GGACCAGAGATGCAGGTCAAATTATTGAAATCATTAGGCTTGCAATCCAC
CATGATTACAGATGGGAAATCACCCATCAATCTGTTCAATACGGCCGAAG
GATTGATTAGCACGTCAGCTGTAGCCCGCAAACGCAGGTCGAGCTTTACT
TCTGAAATGTCGGATGAGTGAAATGGTGTCAATCATAATGTGTCCCGTGA
TTACGGGATTTTATTGACATTTTGAGTACAATTAATTTATTGACATAACA
AATCATGAAAGTTGGTTTTGTTTCGTTTAGTATTTC
Run BLAST on NCBI

transcript from alignment at scaffold_309:272442..284541-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058276 ID=TCONS_00058276|Name=TCONS_00058276|organism=Clytia hemisphaerica|type=transcript|length=12100bp|location=Sequence derived from alignment at scaffold_309:272442..284541- (Clytia hemisphaerica)
GGTTCTCGAAAAGATTTTACAGTGTAGACGGGCTTTTAATTATTTGATAA ATCGCAGGAATCAGCACAAAATTTTGTAAACATCACTTTGCAAATCTACG CCCGAATCGAAGGTTTTGGAAGGACAAATTTCTGGAAAAAAAAGTAAGTA AATTTACTACATATTGCACCACATAATACAAGGTTTCACCACTTACTTTA GGGTCAGAATAGTATAAAAACCTTCTGAAGATTTGAAAAAGTATCTGGGC AGAGATGGATGAATAGAGGTTGATGAGAAATTGAAAGGAAATTTACTTGA TGTTTGATTGACAATATATATACTTGGTCCTATATACTATCTCTCAACTT AAAAGAAAGAAGCTTGTTTTTATTTTTTATACAAACATTATGAACACTTC AGAAAACACCATATGAAACTAGGTTTGAGTTTCTAAAGCAAGAAAAATAG CTGTCTTTTATATGTCGCAAAGCAAGGCAAAAGGTAAATGAAATAGTTTT TGTGTCTCAAAACAAATTTAACGGATGAGTGTAAGTGAGATTATGAACCC TCAACAGGGCAATTCTTGTAAGTATTGTATAGCTTGTTCATCTTTAGATG TTTTAGGGGAGCCATCCAAGCTCAAACTTGTGCCAAAAACAATGTTGTTG TTGATTGGGTACAAATGTATGTACGTACCTTGGGGGGGAGGGCCCCTTTT GGCACTAGAATGTGGACGCTAATTTGTGGCAAAAGATTTTCACCAAAAAT CAAACTGCAACATACAGTAATGATCGTGTATATACCTTTAGGCACCATAT GTGGACACAACTTTTTAATAAACTCAGCAGTAAGATTTTTAAATGGGTGG AAGCTGGTCTACTATGACCTTTTGCTAGTCAGGATATCGTGTTGAATACC GTGAGAGGTCCCAAATCCGACACCACTGCCTAATTCCAACCCCCCAAATA ACTGTTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTTTGTAATAAAAGTGACTTGTGCGGGA AAAATACGAAACAACTTGGGCTGGTTTCCATCAAGAAACAAACAGACTAA ATTGCAAAAATGGCGCGAATTTGAAAAAGGGCGGATGCGGTAGCACTTAA TTTGAATAACAAACATCGAATCAACGAGGCGGCAACTATCAACGCCCTCT TTACCATCCATAAGTCTGGATGTTTATTTACGGAAGGCCCGCAATCAAGC CAAGTGCCAGTGTAAAGTAATAAAAACCAGGCTTGATTACGTAACGTTTC AAAATGAGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNCTCTTTTATATTTTCGTGTGCTTTGGAAAATCAAAACATCTCA TTACTTTTTATGATGCTGTTACTACTGTTGTCATTTATGACGTTGTGCAT ATTGCAATAAGAAAATATGTTTTGTTATAAGAAGCAATTATTGTTATTTG GTTCAATTGGTTCAGTGTGTATCAAATCTCTCAGTTTAGTTGACACTTTG GTATCTTCGTTGTGTCACAGCGAAAGGTTTGTTTTTATTTTAGTTTGTAT CTTTGAAAGACCCCATCGGATTTAGGCAGTGGTGTCGGATTTAGGACCTT GCACGGTAATCAAAAAATATACAGCCTCAAAATAAAGAAAAATTAATGCA TAATTATTATAAGTGCAAATTGAATTTGATGCTGGAGTCTTTAATTATAC AGCATGACATCATAACTAGCAAAAGGTCTATCATTGGGTCACTACTGTAA CTTGGTCTAATGTCGACACCCCTCCTCTAACTTCGACACCCTTTTTATCA GCTGAAATTTATAGAAAGGTTGAACTGTTTTTCTTTGCTTAGTGGTCAGA GAGGAATAATCCTTTTTCAATCAGTAATTCAAGCTTTCATATTATTCCTT TCTCTAAAGAAGGGTGTTGGAATTAGACGGGGGATGTCAATATTAGACCA ACTTACAGTACATATATTGTTTTTGCTGCAAGTCTATTATGGAGTCAAAA TGACATCACAGCTAGCAAAAGTCTATGTTGCTATATGTAACAAAATTATC AATTCTTGGAATTTTTGCAAAAAAGTTTAGAAATTATCTCTGTTAATTGT TGAATGTATACTTAGGAAATGCAAGGCATCTGGAGATATAGCGTTATAAA GAAATAATAAATAAAGTTAGCTGACAAAACAATGATGAATAGTTGAATAT CTTGAAATTTAAGTTTTATTACATGGAAATGTTATGGAAGGGGTGGGGGA TTCATAAACAAAACGTCCAATCAGCGTTTTCTGTGGCAAGATTGAGTTTG GATGGCTTTAACTGCCAAATTTGATCTGAAAACAATATACTGTATTCTTA AATTTTGATTCCTCAGCAAATTTCTGAATTATTATAAGGGACTTTCCTAT TACTTCAAACTTTTGATGATCCACTCCCTGGTCATTACTGCAAAATAATC ATTTTCTGAGAGAATTAGATGTCTAAAATAGCTATAAAAGCAACTAAACA CTAGGTGATGAAGTTTTATTATAAGATTAATGTTTTGATAGAGGACAAAC TTAATTATTACAACCTTACTACTCTTAAAAGAGTTTTGTAACATAAAGTT TTTATAACTTTTGTTATTTCAAGTTACCAATATGGCTTCAAAAGGACGAG GAAGCGATGACTCTACCAGTATTTACAGAATTCCACCATATTATTACATT CACATTCTCGACCAAAATACCAATGTCACCTCTGTTGAAGTTGGTCCAAA GACCTACATCCGTCAAGACAATGAGAAAGTTGTCTTTGGACCCCAGCAAA TGATCACTATCCCTCCAAGACACTATTGTGTTATTGAAAACCCTGTGTCA ATCGATGCTGAAGGCAAAGTTATTTTCGATGAAAATGGTCAAGCTAAATT GAAACATGCTGACTTGGTGAGTCTTATTTTTTCTTTGCTTTTGAATTTTA CACAATGAAAAATTAAGACAAGACACAATTTTTTCAATTAGTCCTTTTAC GAGAAAAAGTTTGCAAAAAAATAAAAATTGAATTCAATCATTATCAAGGT TCAAAAACTATGTCTACCAATAGATTGATATATTTTCAATCCTTACTTTT ATGCATTGATCTTTCTTTGATTAAAATATAAATTTTTGAGTCTTAAAAGA GCAAGAATGAGATCACAAAACTGCATGTTAGCAAACAGCCAAAAGTGTCA TGGTTTTCCTGAAAAAGGAAATATTTCCCTCAGATTGTTGATTTTTTTAA TCTGTCCCTTAGAAGATACACCCCTACTCCTCAACCTCTTACTGATAAAA GATTTCTCTTCCAAATTTTTCATCAAATTTTTTAATTTTTTATTTTACAG GAAATCAGACTTGCCCAAGACCCATTTCCATTATACCCTGGAGAAACTTT GAAGAAACCAAAAACACCTTTACAAGTTGTTCCAGCTAACTCAGCTTTAC GTTTGAGAGCTCTCCTTGATTTCACAAGTGATGCAAAAAAAGATTACGTT GCTGGTGATGAATGGCTTTTCGAAGGGCCTGGAACCTATATCCCAAGAAA AGAAGTTGAAGTTGTTGAAACTATTAGGGCTGTTATCATCAAACCTAATC AAGCCATCAAATTGAGAGCACGAAAAGAAACTTTGGTAAGGAACTCATGT ATATTTCTAGTGAAAAACCATAATTGGCCTATTTTGAATCTGTAATTTAA GAAGTTTTTTAGGGCTCAGGTCAATTTCATCCTGGTCTTTTCTCACAAGT TGCAAAGATGAGCTTATATTAAAATTTGAAAAATAAATACCTTTTTTATA AAATTGACTTTACCAAAGAAAATGGCTGCGTTAGACTCAAAGTTGTTGTC GAATAAAAAATGATGAAATATTCTTTAAAAGTAGAACTCTTTTACCAAAG ATAAGATTTTATTATATCAAATTTTCTTATAAATTTCTTTTTTTCNGTAA GATGCAAGATTTTACTCTATTCAATTTTCTTATACATTATTCTTTTCTTT CAGGATCGCGAGAGTAACCCACGTGTGACAGGTGAGGAATGGGTTGTCAA AAAGACTGGTGCTTATTTACCCGGGGCATATGAAGAAGTTGTCGAAATTG TTGATGCTTATGTGTTGACAGACAAAGTTGCATTACATATGAGAGCAACA CGAACATTCAATGATGAAAAATTGAAAAAGACACGAAAAAATGGTGAAGA ATGGTTGATCTCACTTGAAGATACTGAAACACATATCCCAAACGTCTATG AGGAGGTAAAATGGAAATTATTTTTCACAGTAAACATTAAACTTTAATGT CACAAGTCATAGATGAGACCTTGGAGGGTTGTTTTTACCAATAAAGAGAT GGTCACCCCTTTCTGTAGTATAACAAATGATGGAACCAGTTTTTTATTCC ACTTTCCCCCTTTGTTAATTACTTTTAATAATAGTCGACCACCTTGCACT GGTAACTGATGGTATATAGATAGCCAAAGGNACTTTTAATAATAGTCGAC CACCTTGCACTGGTAACTGATCGTATATAGATAGCCAAAGGAAGCATGCT ATGGTCTTTGACTAAAGATATAAATTGGAGCTCATTTTCTAACCTCCTCT ATCAAACTTTTCTGCCTTCCTGATCTTGACTTGTAGTTATTTCATAATGA AGCATACTTGCAATTAAAACTGAATGAAAAATAGTAGAAATTTGAACAAA AATTGTAAAGAAATGTGATCATTATTAAACTATTATTGACTATTTTTCAA ATTTTACTCCACTCTGGTATCTTGTTTGTTCATCACCGAGCACCTGTTCA ATATAATTCCATGGCAATGATTTATAGCATTTCCCAGGTGGTGGATGTGG TCTATCGAACTTTTCTGCCTTGCTAATCTTGACTTGTTGTAATTTTATAA TGAAGCATACTTGCAATTAAAAATGAAAGAAAATTTGTAGGAATTTTAAC GAAAATTGAATTATTGATATTTCCCAGGTGGTTGATGTGGTCAACATTAC AACATTAAACAACCGTCAATACTGTATCATTTGTGATCCTGTTGGAGCCG ACGGTAAACCACAACTTGGTCAAAAGAAATTAGTCAAGGTGAGTTTTGAG AATTTCTTGATTTTTTGACTAGTGGTGAAAAGAGGTGGATTTGAGTTAAG TCTTCACTAATTGTATCAATATTTGGGTTTTATAAACATCTTTATTTTAC ACTTTGCCTTGTTGATAAAAAGGCCTAATTTGAAAAGATATTACGGTAAG GTCTTCACTTTGCTTCCTCTAGGATTTTAAATGTCTTTATTTTACATTTT GCCTTGGAATCAATAATTCTTTCTAATTCTAGAAATAAAGAACTAACTTA CGATTGATGTATGCAGTTTTCATGCAATGCAGCCTATAGTAGACTCCAAA TTAAAATTGAAATCATCCAATATTGACATTTCATACATAAATTTTCTTCT TCTTTTCTTCAGGGTGAGAAATCATTTTTCTTGCAACCAGGAGAACGTTT TGAGAAAGGCACTCAAAACGTGTATGTTCTTGGTGAGGATGAAGGTTTGA TTCTCAAAACGACCGAAGAATTTATGGATGGAAAAGAGAAGCGAGCTCCT GGTGATCGATGGATGATCAGAGGTCCACGAGAATACGTACCACCTGTTGA GGTTTGTCATTCACATGTTTTTATAAGAACAAACTATATAAGAACATAAG GCTTCGATGGCCCAAATATTAAGAACAAGTTAAGAACAAGTTAAGAACAT GTTCAGGCTTTGTAGACCCGATTTTTTACGAAGATATTAAAAAAAAATAC TCTCAAAATGATGAAAACAAGAACATTTCAAGAACATTTTAAAGCTTAGA AAACAAAAAACAAAGAACACTCGAAGGCTTCCAAATGTTTGAACGTTCTT ATAAAAGGAACATGTATGTTTAATTGTCTAGAGAGACGAATTGAATGAAT TTGTCAATGAAGGTGACAAAACCACGTTAAGTTTGTTTCCATGATCATAC ATTCACCGGCTCGAGAACAAAGCAGAAGGGTGCCTTCATCCATGCCAACA CAGCAGGGCCTCCTGGAGGTCCAGGAAAAGTCTTAAAAGAACCGGAACGA GATGGAGTTTTTACAAGCTCTTATTTGATTACCAACCAAATCAAATAAGA GCTTGTAAAAAATCCATCTCGTTAACCAGTAATAAAACAATTTTGTTACT TTTTCTAAAGAACGCGTCATTCTTATTACTTCAAATGACCAATTATTAAA GTATCTTATAAAAACTCCATCTCATCTGTTTTATCCAGGTCGAAGTGACC AGTCATCGTAAAGCAATTCCACTGGATGCAAACGAAGGTGTTTACGTTCG AAACATCAAGACCGGTCAAGTGCGTGCTGTGGTTGGTCAAACCTACATGT TAGATCAGGATGAAGAACTGTGGGCCAAAGAATTGCCACCTGTCGTCGAG GACTTGTTAGCGCAAGGTATGGAGAGTACTTTTTCCATATTTGACATATC TTTATCTCTAAATTCTAATCTTCTAAATTTATGTCTCTTTAAAACTAGCC TCGATTTCACTTGAGATTTTGATTAAATGAATGTTAAAAGTACACCAATT CATGATATTCATGACGTAGTGTTTTCTACGGAAAGACCCTGGTTTTTGCC TGTAGTGGCAAATTTTATACAACTTTTGTCTAGTTTAAAGTTGCCACTAC TGGCTAAAACCGGGGTATTATCGTAGAGAAAATTACGTCATGAATATCAT GAATGGGCTCGTGCTAAATTGGTAAACAATATCAAAAAGCAAAGTTCAGT CACAAATAGACTCTAGTCAACTCAAAAACTATACTTTTGAAATTAGAGGT TATCGGGATCTATCTATCTACATTTTCATGATATATTTAGTTAACGATGA TAGATCGCTAACCGCTTTCGCTTTGTATAACAGTCTGTTCCTCTAAAGAA TCCTGCATTGTAACACGCATGCGTAATTTGTCGTTCTTTTAAACCATATG TAGTTAATTCCCGTGATAAACAAAGGAATAAATCCGCAGGGGTGGTTGTG GACGGTGAAATTTGTCGTTCTTTTTGTCTATTTTTAGTAATGCAGGATTT GATACATGGACCCCCTCATAATGTGCAAACTACGTAATTTATTGATAATG TTTTATCATTTTTTCTTATAGGTAAAGACCCACTCGCTGACCGAAGCGAG CGTGGATCCAAGGGAGCAAGCAAGGCAAGAGACAAAACGAAAGTGGTTGT TTTCCGCGTGCCCCACAATGCTGCAGTGCAAATCTATGATTACAAAGACA AGAAAGCCAGGTAAATGAAATCCCCATCGCTAAAAAAATACTCCTATTAT ACACAGGCACGAAGAAGCAGCTCTTAAATAGTGATTATTTGAGCTGACAT GATATTTTTTTCAAACTCGCCAACATTGCCAATTTCTTGAAAAGTTCCCC TAAGCTTAAAAATCTTGAAGCCGTTTTTTGAAATGTAGTTGAAATATTTT TACTAAATATTTCCCTTTCCCGAAAAAAACGGCCTTTCAAAGCTTACTAC ATTGGCGTCTCTTTAACTCGAACCTCTGTAACTCGAGTGTCTCCTTAATT CAAACAAGTTTTATGGCTCATTCAAACAGTTAACAATGCCTCTTAAACCT TTACTCCGTAACTCAAACAAATTTTCGTATTGTACATTAGCTTATGTGCT TTGAATTTCTTCTTGCAGAGTCAACTTTGGACCTGACCTTGTCATGCTTT TACCCGACGAACAATTCACCGTCTTGAGCATTTCTGGTGGAAAACCAAAA CGACCAAATGTAATCAAAGCCTTATGTCTATTACTGGGCCCAGACTTCTG TACTGATATCGTTGTCGTGGAGACGGCTGACCACGCCCGATTGTCACTTC AATTGTCATACAACTGGTAAGTGGTTATTTCTCTACTATTCTTTGTTTTA GTTTTTAAGGGGTTTTGTATTGTTTTTGAAAAGCTGACGAATGAAGAATA AATTTTGGATTCTAGGCCAATGAATTCTTAGCAAGCCCAATCATTATCAG CGTGGATATAAACTTTAGGATGCGAGCTGACAAATTGTTATTCTTTTCAT GCTTAGGACCGGCAAAATTCGCTGTTCGCCGTGCCTGAAATTGATAAGAT TACTCTCTATAATTCGAATTTTTCTCTGATTCGAAGAATTTTTTGGTCCC TTGAAGATCGAATTAGAGAGAGTCAACTGTATGTAAATTAGTTTTTCACC GTTATTTAACAGGCATTTCGCACACGAAGCAAAAGACGGTGCTCGATTAT TCTCTGTTCCTGATTTCATCGGAGATGCGTGCAAAGCAATCGCCTCCCGT ATCCGTGGTGCCGTCGCTTCCGTAAAATTCGACGATTTCCACAAGAATTC CGCTAAAATCATCCGCGCATCCGTTTTTGGATTAGACGAGAAAAATAAAG TGCGTGAGAAATTTACTTTCCCAGCTAACGGGTTAAACATTACCAGTGTG GATATTCAGTCTGTCGAGCCTGTTGATCAACGTACCCGAGATGCTTTGCA GAAATCTGTTCAATTGGCTATCGAGATTACGACAGCCTCACAAGAAGCCT CTGCTAAGTAAGAAGATTTCTTCTTTTTGTTCTTTCTTTCCGTTTGTGTA TCCCGATCACAGACCTTTATATAAACTATATTTATATACCAAAATCTTTG ATCGGAGATCTGCGTTCCCTCGAATACTTTTGATGATATAGCGCCGTTAG AGGTTAATTGTCAACACTGCAAAGGCGTCTTTAAGGATACCGGGAAGCGA TTTGGAATAACTCCACAGTTTTGACCTGGAAAATCGAGGACTGTAAAAGT GCTGATTTACTATCGTCTTCAGTCAGCCAGGATTCAGAAAAATCAAAAGC TAATCGACTCTGTCACTGAAGAAAGGTTAATCTGAATCGCAGACCTCTTT CTATGTAAGGAACATTTTTGCTAGAGGATGAGCAGAAGCTTAAATGTCGG TTTGTTTGAGGAGGGATTATATTACTCAATGAATTTTTAGTATGTTAACT TATCGATAGAAAATTCTTAGGTAAAAATTCCATCAATGAGCGATATCTTT CATTTTTTGGCGACGAATTTTCTGCCGAAGAACTTTTTGATTCTAACAAT CACGGCCCCTTTATACTCTAGGGGCTGAGCTAGGTCCCGTATGCGCATCG GCGTATAGTCATTTTTTCTTTTGATCATGAAAGTATAGTCCTTGAAGAGT CAGAAAACGTGTGTGGCGTTATTTGGATCAGGCACAAATTTCCATAGGAT TTTAGATTTTCAACCCTTTTTAGCACTCTTAAAATTTTGCGGTATAACTT TTTAAGTTTGGTCAAGTAGTTGTCAAGTTATAAGCTTTTGAAGTTAAAAT TCACTTTTCGAAAAGTGTGAAAAACACGTAATANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTAA TAAAACAATTTTGTTACTTTTTCTAAAGAACGCGTCATTTTTATTACTTC AAATGACCAATTATTAAAGTATCTTATAAAAACTCCATCTCATCTGCAAA AGTGTTGAGCCTTTAACAATTTCTTTCTTTTCTCTTCACAGACACGAGGC TGACAGATTGGAACAAGAAGCACGTGGTCGTTTGGAAAGACAAAAGATCC AAGATGAAGCCGCATCTGAAAAAGCTAGACGTGAATTGTTGCAACTTNAA GACAAAAGATCCAAGATGAAGCCGCATCTGAAAAAGCTAGACGAGAATTG TTGCAACTTCAAGCTGAAAGTGCCGCTGTTGAATCAACTGGTCAAGCTAA AGCGGAAGCACAATCCCGCGCCGAAGCCGCGCGCATTGAGGGCGAAGCTG CTGTACAACAAGCGCAACTGAAAGCGGAAGCCTCCAATATCGAAGCTGTA AGTATTTTGCTCAAAGGATTGTTAAGAAATGGGAAAACAGCTTTTTGATA CGGCTTTTCATTCATATGCAAGGTCGCTTACCCTTCGGTGTCATTTGGTT ATCATAACTGAAATAAAGGATTTTTTCATTAAAAGGATTTTCCATAGAAA CGACCAGAAGCTGTTTTTCTATTTTCTTCCACTTTTCTGCTCAAATCGTT TCAGTCTTACACACTACCCTTTATTCATGATATTCAAGATCTTTTCATAC GGAAAAAATCCAAACATCGGGTGTTTACTACTAGTTCTATAATTGTTTAA AACTTGCCACTAGTTCTGAATTAGAGATTTTATCATAGCTAAAGTTTAGA TAATTAAACATTTTAATTCTCTTTTTTCTTGTCATTTGAAACTGAATGAT TTTTTGTTGCCAGGACATGGCCCCCGGCGTGCAAATCGAATTGAGGGGAC CAAAAAAATATGTCGCCCACCATGGTTGGGCGACGAAGAAAATTTTCGAC TTTTTACCCTTATTTCACCCCTCTAAACGGTATATATAAGATTTTTTAAA GTAAAAAAAAAATACTTTGCAAAATATTGGGGGGCCATGGACTTATGCGT AGTTACATATTGAAAGCAACAACTTGAAAATTATGAAAAGGATTTGTATT TCTAAATTGGTGTATATAAATTCCCATTCTTATTTTCCAGGCTTCCGAAT TGAAACGCTTGACTGCCGCTCGTGACGCAGAAACAAAATATATTAAGGAC CAGAATGAGTTAGAGATTAACAAGACTCAAGAACTTGCTCACATCGAGTC TGCAAAATTCAAGCATATGGTTGACGCTATTGGGCCAAATACGATCCAAT CGATCGCCACTGCAGGACCAGAGATGCAGGTCAAATTATTGAAATCATTA GGCTTGCAATCCACCATGATTACAGATGGGAAATCACCCATCAATCTGTT CAATACGGCCGAAGGATTGATTAGCACGTCAGCTGTAGCCCGCAAACGCA GGTCGAGCTTTACTTCTGAAATGTCGGATGAGTGAAATGGTGTCAATCAT AATGTGTCCCGTGATTACGGGATTTTATTGACATTTTGAGTACAATTAAT TTATTGACATAACAAATCATGAAAGTTGGTTTTGTTTCGTTTAGTATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036710XLOC_036710Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058276-exon-scaffold_309-1575043694:284399..284541TCONS_00058276-exon-scaffold_309-1575043694:284399..284541Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:281176..281468TCONS_00058276-exon-scaffold_309-1575043694:281176..281468Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:280457..280741TCONS_00058276-exon-scaffold_309-1575043694:280457..280741Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:279837..280088TCONS_00058276-exon-scaffold_309-1575043694:279837..280088Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:279004..279114TCONS_00058276-exon-scaffold_309-1575043694:279004..279114Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:278441..278629TCONS_00058276-exon-scaffold_309-1575043694:278441..278629Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:277626..277803TCONS_00058276-exon-scaffold_309-1575043694:277626..277803Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:276782..276920TCONS_00058276-exon-scaffold_309-1575043694:276782..276920Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:276176..276373TCONS_00058276-exon-scaffold_309-1575043694:276176..276373Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:275485..275829TCONS_00058276-exon-scaffold_309-1575043694:275485..275829Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:273834..273900TCONS_00058276-exon-scaffold_309-1575043694:273834..273900Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:273595..273770TCONS_00058276-exon-scaffold_309-1575043694:273595..273770Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1575043694:272442..272901TCONS_00058276-exon-scaffold_309-1575043694:272442..272901Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:284399..284541TCONS_00058276-exon-scaffold_309-1510915933:284399..284541Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:281176..281468TCONS_00058276-exon-scaffold_309-1510915933:281176..281468Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:280457..280741TCONS_00058276-exon-scaffold_309-1510915933:280457..280741Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:279837..280088TCONS_00058276-exon-scaffold_309-1510915933:279837..280088Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:279004..279114TCONS_00058276-exon-scaffold_309-1510915933:279004..279114Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:278441..278629TCONS_00058276-exon-scaffold_309-1510915933:278441..278629Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:277626..277803TCONS_00058276-exon-scaffold_309-1510915933:277626..277803Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:276782..276920TCONS_00058276-exon-scaffold_309-1510915933:276782..276920Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:276176..276373TCONS_00058276-exon-scaffold_309-1510915933:276176..276373Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:275485..275829TCONS_00058276-exon-scaffold_309-1510915933:275485..275829Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:273834..273900TCONS_00058276-exon-scaffold_309-1510915933:273834..273900Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:273595..273770TCONS_00058276-exon-scaffold_309-1510915933:273595..273770Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1510915933:272442..272901TCONS_00058276-exon-scaffold_309-1510915933:272442..272901Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:284399..284541TCONS_00058276-exon-scaffold_309-1491911889:284399..284541Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:281176..281468TCONS_00058276-exon-scaffold_309-1491911889:281176..281468Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:280457..280741TCONS_00058276-exon-scaffold_309-1491911889:280457..280741Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:279837..280088TCONS_00058276-exon-scaffold_309-1491911889:279837..280088Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:279004..279114TCONS_00058276-exon-scaffold_309-1491911889:279004..279114Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:278441..278629TCONS_00058276-exon-scaffold_309-1491911889:278441..278629Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:277626..277803TCONS_00058276-exon-scaffold_309-1491911889:277626..277803Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:276782..276920TCONS_00058276-exon-scaffold_309-1491911889:276782..276920Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:276176..276373TCONS_00058276-exon-scaffold_309-1491911889:276176..276373Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:275485..275829TCONS_00058276-exon-scaffold_309-1491911889:275485..275829Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:273834..273900TCONS_00058276-exon-scaffold_309-1491911889:273834..273900Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:273595..273770TCONS_00058276-exon-scaffold_309-1491911889:273595..273770Clytia hemisphaericaexon
TCONS_00058276-exon-scaffold_309-1491911889:272442..272901TCONS_00058276-exon-scaffold_309-1491911889:272442..272901Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_309supercontigscaffold_309:272442..284541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
349.598 352.119 374.179 359.79 164.761 121.916 327.92 388.71 462.057 514.895 694.74 269.21 418.068 392.901 182.21 219.252 212.54 236.452 381.345 526.829 274.155 284.971 227.95 238.69 388.217 423.052 369.858 373.558 257.401 230.29
Blast
BLAST of TCONS_00058276 vs. Swiss-Prot (Human)
Match: MVP (Major vault protein OS=Homo sapiens GN=MVP PE=1 SV=4)

HSP 1 Score: 889.797 bits (2298), Expect = 0.000e+0
Identity = 438/684 (64.04%), Postives = 543/684 (79.39%), Query Frame = 2
Query:  227 LDQNTNVTSVEVGPKTYIRQDNEKVVFGPQQMITIPPRHYCVIENPVSIDAEGKVIFDENGQAKLKHADLEIRLAQDPFPLYPGETLKKPKTPLQVVPANSALRLRALLDFTSDAKKDYVAGDEWLFEGPGTYIPRKEVEVVETIRAVIIKPNQAIKLRARKETLDRESNPRVTGEEWVVKKTGAYLPGAYEEVVEIVDAYVLTDKVALHMRATRTFNDEKLKKTRKNGEEWLISLEDTETHIPNVYEEVVDVVNITTLNNRQYCIICDPVGADGKPQLGQKKLVKGEKSFFLQPGERFEKGTQNVYVLGEDEGLILKTTEEFMDGKEK----RAPGDRWMIRGPREYXXXXXXXXTSHRKAIPLDANEGVYVRNIKTGQVRAVVGQTYMLDQDEELWAKELPPVVEDLLAQGKDPLADRSERGSKGASK---ARDKTKVVVFRVPHNAAVQIYDYKDKKARVNFGPDLVMLLPDEQFTVLSISGGKPKRPNVIKALCLLLGPDFCTDIVVVETADHARLSLQLSYNWHFA----HEAKDGARLFSVPDFIGDACKAIASRIRGAVASVKFDDFHKNSAKIIRASVFGLDEKN----------KVREKFTFPANGLNITSVDIQSVEPVDQRTRDALQKSVQLAIEITTASQEASAKHEADRLEQEARGRLERQKIQDEPHLKK 2215
            LDQN+NV+ VEVGPKTYIRQDNE+V+F P +M+T+PPRHYC + NPVS DA+G V+FD  GQ +L+HADLEIRLAQDPFPLYPGE L+K  TPLQVV  N+AL L+ALLDF        VAGDEWLFEGPGTYIPRKEVEVVE I+A II+ NQA++LRARKE  DR+   RVTGEEW+V   GAYLP  +EEV+++VDA +LT+K ALH+RA R F D +   +R+ GEEWL++++DTE H+P+V+EEV+ VV ITTL    YC+I DPVG DGK QLGQK++VKGEKSFFLQPGE+ E+G Q+VYVL E +GL+L+  +   +G+++       GD W+IRGP EYVP  +VEV   R+AIPLD NEG+YV+++KTG+VRAV+G TYML QDE LW KELPP VE+LL +G+DPLADR E+ +  + +    R+KT+VV +RVPHNAAVQ+YDY++K+ARV FGP+LV L P+EQFTVLS+S G+PKRP+  +ALCLLLGPDF TD++ +ETADHARL LQL+YNWHF      + ++ A+LFSVPDF+GDACKAIASR+RGAVASV FDDFHKNSA+IIR +VFG +             + R++  FP NGL ++SVD+QSVEPVDQRTRDALQ+SVQLAIEITT SQEA+AKHEA RLEQEARGRLERQKI D+   +K
Sbjct:   19 LDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCTVANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTALHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARKECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFR-GVSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKRVVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIRGPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELPPGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARVVFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQLAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRTAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEK 701          

HSP 2 Score: 151.754 bits (382), Expect = 2.152e-37
Identity = 97/152 (63.82%), Postives = 123/152 (80.92%), Query Frame = 1
Query: 2206 SEKARRELLQLQAESAAVESTGXXXXXXXXXXXXXXXXXXXXVQQAQLKAEASNIEAASELKRLTAARDAETKYIKDQNELEINKTQELAHIESAKFKHMVDAIGPNTIQSIATAGPEMQVKLLKSLGLQSTMITDGKSPINLFNTAEGLIS 2661
            +EKAR+ELL+L+A S AVESTG AKAEA+SRAEAARIEGE +V QA+LKA+A  IE  +EL+R+   R+ E  Y + Q ELE++K Q+LA +E  KFK M +AIGP+TI+ +A AGPEMQVKLL+SLGL+ST+ITDG +PINLFNTA GL+ 
Sbjct:  699 AEKARKELLELEALSMAVESTGTAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELEVSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPINLFNTAFGLLG 850          
The following BLAST results are available for this feature:
BLAST of TCONS_00058276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MVP2.152e-3764.04Major vault protein OS=Homo sapiens GN=MVP PE=1 SV... [more]
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