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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=transcript|length=2287bp
TGAAATCAAGAGATGTGATTGGTCCAGTATGTCCTTTTAGTGATGATATT
AGATAAGGATGATTGATTCCGTTATCATTTAAGTTTTGCTGtactttctt
ttttgacacaggGTTTCTAAGCTTCTTTTGACTATTTGAAGTGTTTGGTT
CAGTTTTCTTGACTTCCTCTTTCTTGACTTCAGCTTGCggttcatcttct
tctttctttctgaATGTCAACAGGTATAAAGGAATGACAAAAAAGAGTAA
TCCAAGAGCAATTGCGACAAATATTGCTGCttcatccgccattttgtttg
ttttcgtgTTGCAATGACTAGCCTCTATCTGTATGATTCAGTGGATGATT
CACGCGcccattttaaagaatttgattggctgtgctgaatagaactttta
aaattaatcAATAAGAACTCTCAAATTTTGCGCTGAAAATAAGTCTTTTG
AAATTAACAGGCTAGTGTACCAAATACAAAATCCCGCCTCCGGCAAAATC
TTTCCTTTACAAAACAAAAGCTTCGAAGCTTCACGTTCACATCCACCAGC
AGTTTTAGGAAGAAAGATACCCTTCAAGTACAACAGTCATCATGGTTACC
CTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCACT
CGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATTG
GACCAAAATTTGAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCATC
AAAGTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGC
TGCCATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGG
TTGTTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCT
GCATGATTTTGAACTAAAAATTAGCTTCCTACTTCACCGACTAGTACCTA
TACTTTCAtaagatttttgttttgtatcataatttttattttactttacg
cttatttacaaattttgtatgATTCAATGTCTTTGCATAATTTTATTATG
GGATCTTCTAAATAACTTGCTACTTTCAtgtaaaatcgaaattttcgttt
caaaatcatatttattcATATACACTATTCACGTCTTTAAGTTTGAGCTC
GTTTTCAGTAATTTCTACTTTCAAAAGGTCAAAAGGTTTTGAAGTAAAGT
GCAGTTGAAATCCTTTCGATAACATTAAAATGAATTAACACCTTTTGATA
TTATATCAACCATATTATCCCGTACAATGGGTGTGCCACTGGTTAGGGtc
catgagtcccaggtagggtcgcaaaaacaccaaaataaaaagtcggtCCT
TCTCAAGGcacttttttgattgaatttggaaaaatttcggAATTTCAGTC
ACAAACGAGTCCCACTTCAGCGGCACAACCCCTTGATCGGCAAGGGTAGC
ACCCCCGGGCTTTTTTTCTTACTAGGCTAAAGAACTGAGGCTTTTCCTGT
GCTACCCTTTAACTTTTGATGGAATTGgcctttttgaatgaaattatcat
aataaaactttcgaaaaaaaattcaaaagtttcctTAGGCCTTCCAActc
ctagactagtaaaccacgtcgttgtatttcgctgcagattaaactttcaa
tgggatctattttttttaatgttttctgaATACAACTAGTCTgtctttcc
aatccactctcccgcggcaatttctattttttataagaactctttattat
aagcactattcccgcgttcctgtgtccaaggaaagacagacgcttgctag
tctatcCAACTCCTGAAAATGTCATTTtgctcaatgtgtgaaaaattcta
gatgttaaaaattaattttgaaacccaaaaatGGTTACTCTTAGGTTGGA
AATAAGCGGGTTCCCCGTTTGTTactttctcgaaaattttccaacccccc
acCCCGGATCTTATTAGGAttccccgtttattaattttcaagaatatttt
cagctgtcaaagagaaggccccttattttgctcctaaatatcctgatttt
agcctttatcatcaacatgaaaaataaaatatgagGAATATGTAATATGT
agttatcacacttttactcgtacaatataatataggatatatttttctcg
ttcagagttttctatatttgaaaatatgacgaaaaatctgaactcgaaaa
atatattgctattGTACTACTTAAATTTTCCAGGCAGAAATCTATATTTT
ATACAcggcaaatatgaaaaattctttaaggtcatca Run BLAST on NCBI protein sequence of TCONS_00058274-protein >TCONS_00058274-protein ID=TCONS_00058274-protein|Name=TCONS_00058274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MVTLVKTKTEFDSTLSNNPLVAVDFTASWCGPCKMIGPKFEAMAAQFPSI
KFIKVDVDENSETSEALGIAAMPTFFFYANGEKMKEVVGASEDKLREALQ
ELSA Run BLAST on NCBI transcript from alignment at scaffold_309:247047..251930- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=transcript|length=4884bp|location=Sequence derived from alignment at scaffold_309:247047..251930- (Clytia hemisphaerica)
TGAAATCAAGAGATGTGATTGGTCCAGTATGTCCTTTTAGTGATGATATT
AGATAAGGATGATTGATTCCGTTATCATTTAAGTTTTGCTGTACTTTCTT
TTTTGACACAGGGTTTCTAAGCTTCTTTTGACTATTTGAAGTGTTTGGTT
CAGTTTTCTTGACTTCCTCTTTCTTGACTTCAGCTTGCGGTTCATCTTCT
TCTTTCTTTCTGAATGTCAACAGGTATAAAGGAATGACAAAAAAGAGTAA
TCCAAGAGCAATTGCGACAAATATTGCTGCTTCATCCGCCATTTTGTTTG
TTTTCGTGTTGCAATGACTAGCCTCTATCTGTATGATTCAGTGGATGATT
CACGCGCCCATTTTAAAGAATTTGATTGGCTGTGCTGAATAGAACTTTTA
AAATTAATCAATAAGAACTCTCAAATTTTGCGCTGAAAATAAGTCTTTTG
AAATTAACAGGCTAGTGTACCAAATACAAAATCCCGCCTCCGGCAAAATC
TTTCCTTTACAAAACAAAAGCTTCGAAGCTTCACGTTCACATCCACCAGC
AGTTTTAGGAAGAAAGATACCCTTCAAGTACAACAGTCATCATGGTTACC
CTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCACT
CGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATTG
GACCAAAATTTGAGGTAGAAATGTTTGATGATTTTTTAAGCTTTCTTCCA
TTGCATTTTGACTCAAGAAATTTGGAAATGTTGTCGTTAGAATTGAGTGG
AAAGTCAAATGACAGCCCATTCCTGTATGTTATCTACTCTTCACCTGCCA
TATTCAGCATCATTCACTTTTTTCCCTATTTTTCAGATAGATGAGGGCAG
ATTTATTATAAGATTTCTGGGGCAGTAGCTTAACAGAGAGGTAGTGTTGG
TGCCTTCAGGGGCAGAAAGTGAAAGATTCAAAATTCTAAGTAGCGATATT
GACTACTTGTTTTGCTACATTGTCCTGCATTATATTGTCTGCACGTCGCT
TTTTACTACCTCGTGTCTGTTTGGTTCAGAACTAACAGACTTTTTGAAGT
TCTGTAAAAAAGTTGAAAGTTCTAAATGATTTTACTGTTCTGTGAAAAAA
TCATAACCATTAGTGAAATACTCATTCATCTATTTAAAATTGAAGACAAA
AATTTGTGAAGAAAAACAATTGTGAGCACAAAAAATGCTTTTTTGAACAC
TTGTTTCCAATGAAAAATAACTTTTATAGACTAAGCTTCCATCCTCAAAG
ATTGAAGAAGCTTCTAATAATCAAAGTAAATGAGAGAAAATGAGAGAACC
TCAAAATCAACCAGAATTTGCAACTTTTCTTCCAAAGCAAAAAGACCTGT
TTTCTAGCGCCGCCATGATTTAATACACCTTTTAGGAGTGTCAACTGCGC
ACGCGTCCAAACAATTTTCCATTGTTTTGATTTTAGCGACCGCTCTTTCC
TGCGTAAAAACACGGTATGTAAAATTCCAGTTCTCGTTGTAAGGAAACTT
AGCAGAGAAATGGTAGGTAAAGAACTCTATTTAATCATAACTTCTTTTCC
TCTTGATGAATTTTTGTGGAATTTTCAGGAGAGATCCATAAAATTATCAT
TGATATCATGTTCAAATATCTAAATCATTATCTTTAACCCTTTCAGTCCC
AGAGTTTTCACAGTTACTTTCCCAGAGCTGTAAAATGAGTTTTTGAATGC
ATTTACTCATGCTTCAATATCTCTGGAATCACTAAACCTAGGCCTCTCAA
GTTTTCACCCTTTTTCACTTATAGTATGATGATTATTTTGATAGAAAAAA
ATTTTCAAAATAACATCATCAGCGTGTCACGTGACCAGAGAAAGGCAAAA
AAAAAATTGAAAAAAGCAATTTATTTGCCATTCAATGATAATTTTTTTTA
TGAAAAAATGGTTTAAACCCATTCATTCCTCTGATAAATGTTTAGCATAA
CAGTATCTACTAACTGAAAAAAGAATTAGCTCTAGTTTAGACAGCCCACT
TTTTGCCCTGCCTATTCTAATTGCTAATTAAAGTGGGCATAAAGTGGGCT
GTCTAAAGCCAATGCATAGCCCTCTTTTGACGTCAATGCAATGACTTCTT
TCAATCATTTCCAAGCAATGATTTTAACTGCCAACTTTGTGCCCGCTTTC
TGCCTACTCTAACAATTAGAATAGGCAGGGCAGAAAGTCGACCGTCTAAA
CTAGAGCTTATTTGATTAGCCCACATAGAAAAATTATAATGATCGATAGA
AGTTGTAAAAAATCCCTTTTTAGGCCTTACAGATTTTACTTGCAAAAATT
TTTGTAAATACTTTTGTAAACAAAACTTTTTACTCAAACAAGCTTTTTTT
ACGCGGTTTTTTGCACACGACGCAATATTTTATCTTCTTTGAAAGCTATT
TCAAGACATCTCTTTATTTCCCGCCAAAACATCACAATTTGAAAAAGAAA
GTAGGGACCGCTGTGCAGTCTTCTGGGAAAAAACAAAGCGTCCAAAGGGA
CTGAAAGGGTAAAAGAAAAGAAAAATCGACAGTGTTAAAGTGCGCATTCC
TACCTACCGTTTTCTGCCGTTTTCACGGTGTGGAACACGGTGGAGATAGC
GAGACTCCTAAACGGTGTATTATGGAAAAATCTACCGAAAAATTTACTTT
CAGATTACTCCATATAATATTGTACAAATTTTGATTCATTTCAGCGGAAT
CCTGAGTTATGTCTTCTTAAAGTCATTTTCTTTAGACCAGGCCTCTCCCA
CTCAAGACTCAATTGATTTACTCATTTCAGTGTACCTAACCGCTTAGATC
ATTTTGGAGGAATGATGATACCGTGAGTGAGATCGGGTAACTTGTATCAG
TTGAGGGAAACTTGCATAGCCCTCAAATGAATGACCTGGCTTGTCATCAA
AATACAAAGTTAAATCAAAAAAAAAATGGTAGAGAGCTGCGAACAGAGCT
GCGTAGTTTATTTGTTTTGAAATTTTGCTGCTTTGATTGGTTAGTCATTT
GATGGCTATGCAAGTTTCCCTCCACTGATGCAAGTTACCAGACTTCACGG
TATTTGAGTGAAGCTTCGAAAGTGGAAGCTGAAAAAAAGGGAGCTAAAAC
AGCTTTATCATTGACTTGTTCTGTCATTACACATTATTCATCATCATTAA
GTTCGACAAAACATTACATTGAAAAACTTAGAACCCTGTAGAACCGTGTG
TTAATATTACTAGATTAAAAGCAAAAGTAAAGTTATCTCAAAAATTGTTC
TCTTTCTTTAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCATCAAA
GTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGCTGC
CATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGGTTG
TTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCTGCA
TGATTTTGAACTAAAAATTAGCTTCCTACTTCACCGACTAGTACCTATAC
TTTCATAAGATTTTTGTTTTGTATCATAATTTTTATTTTACTTTACGCTT
ATTTACAAATTTTGTATGATTCAATGTCTTTGCATAATTTTATTATGGGA
TCTTCTAAATAACTTGCTACTTTCATGTAAAATCGAAATTTTCGTTTCAA
AATCATATTTATTCATATACACTATTCACGTCTTTAAGTTTGAGCTCGTT
TTCAGTAATTTCTACTTTCAAAAGGTCAAAAGGTTTTGAAGTAAAGTGCA
GTTGAAATCCTTTCGATAACATTAAAATGAATTAACACCTTTTGATATTA
TATCAACCATATTATCCCGTACAATGGGTGTGCCACTGGTTAGGGTCCAT
GAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAAAAAGTCGGTCCTTCT
CAAGGCACTTTTTTGATTGAATTTGGAAAAATTTCGGAATTTCAGTCACA
AACGAGTCCCACTTCAGCGGCACAACCCCTTGATCGGCAAGGGTAGCACC
CCCGGGCTTTTTTTCTTACTAGGCTAAAGAACTGAGGCTTTTCCTGTGCT
ACCCTTTAACTTTTGATGGAATTGGCCTTTTTGAATGAAATTATCATAAT
AAAACTTTCGAAAAAAAATTCAAAAGTTTCCTTAGGCCTTCCAACTCCTA
GACTAGTAAACCACGTCGTTGTATTTCGCTGCAGATTAAACTTTCAATGG
GATCTATTTTTTTTAATGTTTTCTGAATACAACTAGTCTGTCTTTCCAAT
CCACTCTCCCGCGGCAATTTCTATTTTTTATAAGAACTCTTTATTATAAG
CACTATTCCCGCGTTCCTGTGTCCAAGGAAAGACAGACGCTTGCTAGTCT
ATCCAACTCCTGAAAATGTCATTTTGCTCAATGTGTGAAAAATTCTAGAT
GTTAAAAATTAATTTTGAAACCCAAAAATGGTTACTCTTAGGTTGGAAAT
AAGCGGGTTCCCCGTTTGTTACTTTCTCGAAAATTTTCCAACCCCCCACC
CCGGATCTTATTAGGATTCCCCGTTTATTAATTTTCAAGAATATTTTCAG
CTGTCAAAGAGAAGGCCCCTTATTTTGCTCCTAAATATCCTGATTTTAGC
CTTTATCATCAACATGAAAAATAAAATATGAGGAATATGTAATATGTAGT
TATCACACTTTTACTCGTACAATATAATATAGGATATATTTTTCTCGTTC
AGAGTTTTCTATATTTGAAAATATGACGAAAAATCTGAACTCGAAAAATA
TATTGCTATTGTACTACTTAAATTTTCCAGGCAGAAATCTATATTTTATA
CACGGCAAATATGAAAAATTCTTTAAGGTCATCA Coding sequence (CDS) from alignment at scaffold_309:247047..251930- >TCONS_00058274 ID=TCONS_00058274|Name=TCONS_00058274|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_309:247047..251930- (Clytia hemisphaerica)
GCTATGGCTGCTCAATTTCCATCCATCAAGTTCATCAAAGTCGATGTCGA
TGAAAACTCAGAAACTTCAGAAGCATTAGGAATAGCTGCCATGCCAACCT
TCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAGGTTGTTGGTGCCAGT
GAAGATAAACTGAGAGAAGCATTGCAAGAATTGTCTGCATGAATGGTTAC
CCTTGTCAAAACCAAAACTGAGTTTGATAGCACTTTGAGCAACAACCCAC
TCGTGGCTGTTGACTTCACTGCATCATGGTGTGGACCTTGCAAAATGATT
GGACCAAAATTTGAGGCTATGGCTGCTCAATTTCCATCCATCAAGTTCAT
CAAAGTCGATGTCGATGAAAACTCAGAAACTTCAGAAGCATTAGGAATAG
CTGCCATGCCAACCTTCTTCTTCTACGCAAATGGTGAGAAAATGAAGGAG
GTTGTTGGTGCCAGTGAAGATAAACTGAGAGAAGCATTGCAAGAATTGTC
TGCATGAATGGTTACCCTTGTCAAAACCAAAACTGAGTTTGATAGCACTT
TGAGCAACAACCCACTCGTGGCTGTTGACTTCACTGCATCATGGTGTGGA
CCTTGCAAAATGATTGGACCAAAATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058274-exon-scaffold_309-1575043694:251217..251930 | TCONS_00058274-exon-scaffold_309-1575043694:251217..251930 | Clytia hemisphaerica | exon |
| TCONS_00058274-exon-scaffold_309-1575043694:247047..248619 | TCONS_00058274-exon-scaffold_309-1575043694:247047..248619 | Clytia hemisphaerica | exon |
| TCONS_00058274-exon-scaffold_309-1510915933:251217..251930 | TCONS_00058274-exon-scaffold_309-1510915933:251217..251930 | Clytia hemisphaerica | exon |
| TCONS_00058274-exon-scaffold_309-1510915933:247047..248619 | TCONS_00058274-exon-scaffold_309-1510915933:247047..248619 | Clytia hemisphaerica | exon |
| TCONS_00058274-exon-scaffold_309-1491911889:251217..251930 | TCONS_00058274-exon-scaffold_309-1491911889:251217..251930 | Clytia hemisphaerica | exon |
| TCONS_00058274-exon-scaffold_309-1491911889:247047..248619 | TCONS_00058274-exon-scaffold_309-1491911889:247047..248619 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:247047..251930 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0045454 | cell redox homeostasis |
| GO:0006662 | glycerol ether metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0015035 | protein disulfide oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0045454 |
cell redox homeostasis |
| biological_process |
GO:0006662 |
glycerol ether metabolic process |
| molecular_function |
GO:0015035 |
protein disulfide oxidoreductase activity |
Blast
BLAST of TCONS_00058274 vs. Swiss-Prot (Human)
Match: THIO (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 3.990e-21 Identity = 41/104 (39.42%), Postives = 68/104 (65.38%), Query Frame = 1
Query: 592 MVTLVKTKTEFDSTL--SNNPLVAVDFTASWCGPCKMIGPKFEAMAAQFPSIKFIKVDVDENSETSEALGIAAMPTFFFYANGEKMKEVVGASEDKLREALQEL 897
MV +++KT F L + + LV VDF+A+WCGPCKMI P F +++ ++ ++ F++VDVD+ + + + MPTF F+ G+K+ E GA+++KL + EL
Sbjct: 1 MVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINEL 104
The following BLAST results are available for this feature:
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