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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058269 ID=TCONS_00058269|Name=TCONS_00058269|organism=Clytia hemisphaerica|type=transcript|length=1350bp
AAAAAAGTGGAAAGATACGAAAATACatgataaaaacaaataaattaacG
AATGTTGTCAGTTGTTTCCAATAAATACCCTTGAACTGCCAGTACACGAG
ATTGTACCCACTAGAATGGCTGGTGTGGAAGTTGGACAAGAGTTGGAATG
TTGTGTATGTTTGGAACAATTTGTAAAACCAAAGCTTTTGAATTGTATGC
ACACTTTATGTGAGGGATGTATCGACAAACTGATTCAGAGTGGAACTGTG
AAATACCCTGAATGTTGAGAAGAAACTAAGGTCCCAAATGGTGCATCTGA
GCTATCTACCAATTATATTGCACAAAATATTATCGAGAAAGTGAAAAATG
CTGCAAAGAAAGGCCCTTTCTGTCAAGATTGTGTCGTCCAGTTTCCTGCT
TCAAACCATTGCGAAACTTGTGTTTTGAATTTGTGTAAAAAGTGCACTGA
ATATCATGAGAGTTGTGTGAGGTTTGTAAGTCATAAAATTATTGACATAC
AAAACGTATCTAAGAAGATTTCTAGTACGAAACGTTATTGTCCGAAACAC
AACGAgctgttgaaatatttttgccAGCAATGCAAGGTTGTCGTATGTAA
TGATTGTTGTATGATAAGTGCACAACATAAACATCATGATATTACATTGG
TGTCGGAAGCTATAGACAAAGCCAAAGAAGAATTAAATCAAATGCTCAAA
AAGATGAGAGAGAGTGAGTTAACAATGGTTGACTGTCTTGGGGAAGTCAG
AGAATTTCACCAAAAAGTTGCTGCAGAAGAGGAAAACAATGGTAATATGA
TCAAACAAGCTTTTGATGAAATAAGAGTTGTTCTTGCCAAGAAGGAAGAA
GAATTGGTAAAACAGCTTGCAACAATTAGAGTAGACAAAAAGGAGAAGCT
TAAATTTGACAGATTTTCAACAGCAATCAGCAAAGTTTCCCAATCGGTGC
AATATGTTGAATCTATCCTGAATGAAGATTGTGATGATCTAGATATCATA
TGTGATCTCACGAAACAATTAGATGAAATCCGCAAGGAATACAGTTTGAA
TGGTACATTTATTGTATCTTCTACACCTTTATATTTGCCATCGAAAGGAA
AAACAACGAAACCGACACTTCTGAACCTCAAGAATAATGCAATATTAACA
CTGCATCATAAAAATGCTGACTCAGGAAGCTCGCTGGGCTTTGATATGAG
CTTCGAAAAGTATTCACACAATCTTAGCAGGAATACATTGATATCTGAGC
AAATAAGAGCCTTGTCATTATCATAATAATTTTTATAACCGGTATTGGAT
GATAATTATAAACAAAATATAGTAACTAAAACAATGAGAGGTACATACAT Run BLAST on NCBI transcript from alignment at scaffold_309:67005..68832- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058269 ID=TCONS_00058269|Name=TCONS_00058269|organism=Clytia hemisphaerica|type=transcript|length=1828bp|location=Sequence derived from alignment at scaffold_309:67005..68832- (Clytia hemisphaerica)
AAAAAAGTGGAAAGATACGAAAATACATGATAAAAACAAATAAATTAACG
AATGTTGTCAGTTGTTTCCAATAAATACCCTTGAACTGCCAGTACACGAG
ATTGTACCCACTAGAATGGCTGGTGTGGAAGTTGGACAAGAGTTGGAATG
TTGTGTATGTTTGGAACAATTTGTAAAACCAAAGCTTTTGAATTGTATGC
ACACTTTATGTGAGGGATGTATCGACAAACTGATTCAGAGTGGAACTGTG
AAATACCCTGAATGTTGAGAAGAAACTAAGGTTCGTTTTAATATTTTGCT
GATTTTACTGATTACTTTAGCACCTCTATGAGTTGGATCATAATGCATAA
CTGGTGTAAGTAATGTCCCGTAACAGCACCGTCGATTTTGAGGAGACTGA
AAAAACTCTATTTTGGTTGAGAGTCTCTTCGGTGGAGAGTAAACCATTTC
TAGCCTGTTCCTGCAGTTAAATTAGCCATTTGCCTATAGATTGACATAAC
AAAGACGATATAATTAAATAAAAGATGTGCACATATAGAAGGTGTCGTCG
GCTCTTTTTTTAGCTTTAGCGATTGAAATAACAACAATAGAGTTAAATAG
AATTATTACAGTAGGAAAATTGCTTCTAGACTGGATTATTATTGAATCAC
TAAAGATCAATACTCTTACTATACTATTTTAACTTATCACTTTCACCAGT
CTCCTCTCAAGCTTGCAGCGTTGCTTAAATGTTTATAGATTACTTATCTA
TGTTATAGGTCCCAAATGGTGCATCTGAGCTATCTACCAATTATATTGCA
CAAAATATTATCGAGAAAGTGAAAAATGCTGCAAAGAAAGGCCCTTTCTG
TCAAGATTGTGTCGTCCAGTTTCCTGCTTCAAACCATTGCGAAACTTGTG
TTTTGAATTTGTGTAAAAAGTGCACTGAATATCATGAGAGTTGTGTGAGG
TTTGTAAGTCATAAAATTATTGACATACAAAACGTATCTAAGAAGATTTC
TAGTACGAAACGTTATTGTCCGAAACACAACGAGCTGTTGAAATATTTTT
GCCAGCAATGCAAGGTTGTCGTATGTAATGATTGTTGTATGATAAGTGCA
CAACATAAACATCATGATATTACATTGGTGTCGGAAGCTATAGACAAAGC
CAAAGAAGAATTAAATCAAATGCTCAAAAAGATGAGAGAGAGTGAGTTAA
CAATGGTTGACTGTCTTGGGGAAGTCAGAGAATTTCACCAAAAAGTTGCT
GCAGAAGAGGAAAACAATGGTAATATGATCAAACAAGCTTTTGATGAAAT
AAGAGTTGTTCTTGCCAAGAAGGAAGAAGAATTGGTAAAACAGCTTGCAA
CAATTAGAGTAGACAAAAAGGAGAAGCTTAAATTTGACAGATTTTCAACA
GCAATCAGCAAAGTTTCCCAATCGGTGCAATATGTTGAATCTATCCTGAA
TGAAGATTGTGATGATCTAGATATCATATGTGATCTCACGAAACAATTAG
ATGAAATCCGCAAGGAATACAGTTTGAATGGTACATTTATTGTATCTTCT
ACACCTTTATATTTGCCATCGAAAGGAAAAACAACGAAACCGACACTTCT
GAACCTCAAGAATAATGCAATATTAACACTGCATCATAAAAATGCTGACT
CAGGAAGCTCGCTGGGCTTTGATATGAGCTTCGAAAAGTATTCACACAAT
CTTAGCAGGAATACATTGATATCTGAGCAAATAAGAGCCTTGTCATTATC
ATAATAATTTTTATAACCGGTATTGGATGATAATTATAAACAAAATATAG
TAACTAAAACAATGAGAGGTACATACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058269-exon-scaffold_309-1575043694:68553..68832 | TCONS_00058269-exon-scaffold_309-1575043694:68553..68832 | Clytia hemisphaerica | exon |
| TCONS_00058269-exon-scaffold_309-1575043694:67005..68074 | TCONS_00058269-exon-scaffold_309-1575043694:67005..68074 | Clytia hemisphaerica | exon |
| TCONS_00058269-exon-scaffold_309-1510915933:68553..68832 | TCONS_00058269-exon-scaffold_309-1510915933:68553..68832 | Clytia hemisphaerica | exon |
| TCONS_00058269-exon-scaffold_309-1510915933:67005..68074 | TCONS_00058269-exon-scaffold_309-1510915933:67005..68074 | Clytia hemisphaerica | exon |
| TCONS_00058269-exon-scaffold_309-1491911889:68553..68832 | TCONS_00058269-exon-scaffold_309-1491911889:68553..68832 | Clytia hemisphaerica | exon |
| TCONS_00058269-exon-scaffold_309-1491911889:67005..68074 | TCONS_00058269-exon-scaffold_309-1491911889:67005..68074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:67005..68832 - |
Blast
BLAST of TCONS_00058269 vs. Swiss-Prot (Human)
Match: TRI56 (E3 ubiquitin-protein ligase TRIM56 OS=Homo sapiens GN=TRIM56 PE=1 SV=3) HSP 1 Score: 102.449 bits (254), Expect = 4.113e-23 Identity = 70/259 (27.03%), Postives = 122/259 (47.10%), Query Frame = 2
Query: 143 LECCVCLEQFVKPKLLNCMHTLCEGCIDKLIQSGTVKYPEC*EETKV-PNGASELSTNYIAQNIIEKVKNAA----KKG-PFCQDCVV------QFPASNHCETCVLNLCKKCTEYHESCVRFVSHKIIDIQNVSKKI------SSTKRYCPKH-NELLKYFCQQCKVVVCNDCCMISAQHKHHDITLVSEAIDKAKEELNQMLKKMRESELTMVDCLGEV-REFHQKVAAEEENNGNMIKQAFDEI-RVVLAKKEEEL 856
L C +CLEQ PK L C+HT C+ C+ +L G V+ PEC E V P G + TN+ +++ VK A + G P C C + PA+ C C +LC+ C + H + +H+++D+ CP+H E L++ CQ C ++C +C + H H ++EA+ + L +L + ++ L ++ V +E ++ + G +++A + + R +LA+K+E L
Sbjct: 19 LACKICLEQLRAPKTLPCLHTYCQDCLAQLADGGRVRCPECRETVPVPPEGVASFKTNFFVNGLLDLVKARACGDLRAGKPACALCPLVGGTSTGGPATARCLDCADDLCQACADGHRCTRQTHTHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQPCSQLLCRECRLDP--HLDHPCLPLAEAVRARRPGLEGLLAGV-DNNLVELEAARRVEKEALARLREQAARVGTQVEEAAEGVLRALLAQKQEVL 274
The following BLAST results are available for this feature:
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