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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058255 ID=TCONS_00058255|Name=TCONS_00058255|organism=Clytia hemisphaerica|type=transcript|length=2602bpRun BLAST on NCBI protein sequence of TCONS_00058255-protein >TCONS_00058255-protein ID=TCONS_00058255-protein|Name=TCONS_00058255-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp MALRGGDGEEETTIITTTTTTDTQLKKYRQSREVSEEEAIEKSTTRKVIRRun BLAST on NCBI transcript from alignment at scaffold_309:584073..616504+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058255 ID=TCONS_00058255|Name=TCONS_00058255|organism=Clytia hemisphaerica|type=transcript|length=32432bp|location=Sequence derived from alignment at scaffold_309:584073..616504+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_309:584073..616504+ >TCONS_00058255 ID=TCONS_00058255|Name=TCONS_00058255|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at scaffold_309:584073..616504+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058255 vs. Swiss-Prot (Human)
Match: TNG2 (Transport and Golgi organization protein 2 homolog OS=Homo sapiens GN=TANGO2 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 3.590e-34 Identity = 84/268 (31.34%), Postives = 132/268 (49.25%), Query Frame = 2
Query: 413 KGRIKFVLAGNRDEFFHRPAKDADYWDENSNVLGGRDMTEGVSGGTWMGVNKHGKIGFLTNIRGSTFGVDPAKANMKGRGALVSDFLLSELSAEAYIKQLENERMQYKPFNLVCGDVLNDQ----YFYSNSVDQQPAELLTQDSISLSNGTLGCGWFKVDRSREKFEKLVNENVDSEPTALLEKLQTFLECTERNFPDENIKVENP--FNEVLSSIFIPMHPQHNYGTRTNTMMVVEENNRATFLERTMCQANDPTSQWKKSLFQFDM 1198
K + +LA NRDEF+ RP+K AD+W N+ +L G DM EG GGTW+G++ GK+ LTN +GRG LV+ FL +++ + +Y+K++ E Y FNL+ D+ + +Y N + P +LT + LSN L W K+ ++ F + V + L+ L L E PD I+ + +LS YGTRTNT+++V+ + TF ER+M + S W+ ++F +
Sbjct: 15 KNAYRLILAANRDEFYSRPSKLADFWGNNNEILSGLDMEEGKEGGTWLGISTRGKLAALTNYLQPQL-----DWQARGRGELVTHFLTTDVDSLSYLKKVSMEGHLYNGFNLIAADLSTAKGDVICYYGNRGEPDPI-VLTPGTYGLSNALLETPWRKLCFGKQLFLEAVERSQALPKDVLIASLLDVLNNEEAQLPDPAIEDQGGEYVQPMLSKYAAVCVRCPGYGTRTNTIILVDADGHVTFTERSMMDKD--LSHWETRTYEFTL 274 The following BLAST results are available for this feature:
BLAST of TCONS_00058255 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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