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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058218 ID=TCONS_00058218|Name=TCONS_00058218|organism=Clytia hemisphaerica|type=transcript|length=3061bp
ACAAAACTGAAGAGAATCGAAAGCGTTTTGGAGTGAGTAGCAAAACAAGA
AATCTTATCAGACTTTATTCTAAAATATCAATAAAACCTGAGAGTTATAC
ATTTATTATTGAAATTTGTAAGCAAGAGACTTttgacaacaacaacaatt
taCGAAAATGGTGAAGACATTCAGAGCATATCTTCCACAGTCAGCTTACA
GAAAATATAGCTGTGTCCACTGTAGAGCACACTTGGCAAGTCACGATGAC
CTGATTTCAAAGCCTAAATGTTGGTTGTGGCCCTGCCGAGGAGAGAATTT
TATTAACTGGATTACATGCTGTAGCTgatatttattgtgaaaattgCAAA
ACAACCTTAGGTTGGAAATATGAACACGCATTTGAAAGCAGCCAAAAATA
TAAAGAAGGTAAATTCATTATTGAAATGGCACACATGCTCAAAGAAAATG
GCTGGGAATAAAACAATGGCTTTGCTACAACGATATGTTTATCTTAAGAA
GTTTGATTAGTTAGAAACCAGTTAGAGTTACCATTGAATGATCTAAAAAT
CGAGTTGTTTTGGCCAACGTTTTTGTATGTTCTTGGTGTATTCATCATCA
ACTTGTTTATCGTTAATGTAAATATTATGGAGATAAGATTACTATGGAGG
TAAGTGGATGCCATCTTTTTTGTTAATCAGAGCTTTTCTACGAAATCatt
ctttcactttcgttttttttttcaaaatgaaacattCAATCTTCATTatc
attattgttattattagtattaAAAAACTAACCCTGTAAATATTGTATAT
TATTATTCatttaaaaaactaaaagatgtattttgtatTTACccctttaa
agtttttttggttACCAGAACATGGAGTCTTTAAAAATGATGCCTGTATT
TGAGAACACACATTTTACTTATACTGGTTTAACCTTGCTTTTGATTTTTG
TGTTTATTCATgtttcaacaattttttgatgattttttgacttttttact
aAGAAGTTCTTCAAGTTGTCAAAATCTTGATTTTACGGTTCTAATGAGCT
CCTAATGAGAAATtattaatgcaaatttaaacaagatttatcaaaacttt
ataatcATCAATTTTTATGATGGAATAGCATTGTTATTTTTCAGGTGTTT
GAAGTTTTAAAAGTTCTTGTTTGTTGAACCACTCTTTTTTTAgacgattt
tctgaaaatttcttttgggaAATGATTTTGTCACGTGATTTTGTCTTGTG
ATTTTGTGATAGAAATCTTGGATATTtgaaatgattatcttttttgaTAA
TCTCAGTCATCCAAGTAATAATAATATTGGAAGGAATTGAAACGAAGAAT
TTGAACGTGATAACGACCAGGAATTAGGAAAAAGTAATTCCTGTTTTAAA
TTAGTTCTTTGTCTTAGTAAAGTTGATAAGGAAAATGAATTTATACATGA
ATCAGTCGAAAATGAAACGTTTTCCTCTCGTTATAATGGTTAGAGTTTTT
TAACCAATTTTGTCTTAGTGTTCGTGCGTTGTATGTACATACTTTTGACC
TTGccttttaaaaatgcttttaatttaTCTAAAAGCTGTTTGAAGTATTT
GAAGAAGAAATCACTTTCTTCCGAAAACTTCACTCTTGTAAAtaattttg
tacaaaaaattttgatttaattttattttattttcagttatatgataata
tattatttgattttttttcggtcaacGCAAAATACATTTTGTATGATAAA
ATGTTATGTACAGGATCTCATGTGTACATAGAAGCTGGTATTCATTTGTT
TTGCATAAGACTAGGTACAGGTACCTTTGGGACTGGTTCTCTGTGTATCT
CAATGTTCAAGTCTTAAAGATAACTAAGTGTCTTtaccagaaaaattttt
tacctacaaaaagtcaaaaatttgtcgaaaataatttttaaatacattta
ggatccattttcataactttttttctatacgATTTGCATTTTGATATTGG
CTGACATTTTGAGACTTTTAGAACGTTAATAGGGATAAATTATATGTTAT
TTTTTACAACCAAGTATATCTAGCTACATTTTAAGACAAGATTTTTCTAC
TGGTTAGATTATGTTTTGTTTGATATATTAAAAGTTGTAAGATTGCTAGA
GTTTTAACCATAACTATATTTTTTGTCTCTAGTTCAGGAAGATTCAATAC
TTTTTCCTCTATTGTGAATTATTCTCGATTTCATGCGGAAGGGAAAATGG
GGAAAGTTTGTTTGtaatagattttcatttttatccttCCTAAGCGAcga
atgaaaaaattattttttgagaattttctctcggtagattttttttcggt
gAAATTTACTTTGAAAACTTACAAACCGACtttgcttgatttttttttgc
atttctgaCACCCACGTGTGCGTGGACAGAATGTAAAAAGTTTGATCTTA
GCTTATATAGTTCATCATTGTAATTTGTAGAGCTTTATACTTAGGAAAGA
ACtgtttatttttcctttttcaaggTAGCTAAGGCGACCAATTATAAATA
TAAGaagatttttcctctctaaGCTTGCGAGTGAAGATTCCCTACTTATA
TTTACCTTAGCAGCTCTGTAGCTTCCTGAAAGTGTTTTTTTCGCAGCTAC
ATCAACGTTTGACTTCGTGGATTTCTTTccgtttaaaaattttttccttg
tgaaataatgaattttgttaaatttattttctacttttcaaTTTATGCTC
GTCACTTTCTATGACATCACAGTGATAATTTTCTCAAACCTTCTTACATT
TTTGGCCTATTATCTTGAAAGATTTGGTAGATttgaaaacaacttttttt
gttCATAGAACCGGTAAACTTTCTCAGAGAACATTCTAGAAATTTCCCTC
CTTTATGCACCCAGTTGGTAAACATACTCTAGGTTCTCTGAGAAAGTTTT
CCtctagaaaagaaaatctttttactaactgattgtataaaaataatgtA
CATTTTTCTAGTAttgaacatttttgttttgaaagaagaaagaaaagttc
TGGCATGgcat Run BLAST on NCBI transcript from alignment at scaffold_309:119178..126082+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058218 ID=TCONS_00058218|Name=TCONS_00058218|organism=Clytia hemisphaerica|type=transcript|length=6905bp|location=Sequence derived from alignment at scaffold_309:119178..126082+ (Clytia hemisphaerica)
ACAAAACTGAAGAGAATCGAAAGCGTTTTGGAGTGAGTAGCAAAACAAGA
AATCTTATCAGACTTTATTCTAAAATATCAATAAAACCTGAGAGTTATAC
ATTTATTATTGAAATTTGTAAGCAAGAGACTTttgacaacaacaacaatt
taCGAAAATGGTGAAGACATTCAGAGCATATCTTCCACAGTCAGCTTACA
GAAAATATAGCTGTGTCCACTGTAGAGCACACTTGGCAAGTCACGATGAC
CTGATTTCAAAGGTATTCATCTACTGATTATTTTAGAAAGGTTCTTGTGG
CAGTATTTTACATAAGAAGGTTTTCATTCTGAGGGTTTATAACTCTAACA
GAGAGTACCTCAATAAAAGCTTTGAACACAACTTCtgataaaatttcttt
tagcCAGACAACTTATTATTTTCTGGCAGTCTGGAGGAAAAGCtcattat
tatatttttcttcctttagtcATTCCAAGGAAGTCAAGGAAGAGCTTATC
TATTCAATTCTGTGTAAGTTTTTCATGTACTTCTAGCCAATAATGGAATC
CGTGTTTGAGACTACTCGAACAtggaatgggccattccagaacatttttg
ttacccccgtcggacgacgtgcatttttaaattttttctagcattggaaa
taattttctttttcagtggtggtcggaaattcccataaaaatccatgtac
ttttgcaaaatgcatagGAAAATCCACTCTTTTCTGcctttttcaattca
attgccttggaaattcatacactTTCTtttctcgccttggaaatttcgaa
ttttggtgaaaacttttgccctcgaaAATCCTGTGTCAtccgcccccctg
ttacagacaaattctgaaATGGCCcaagaagaaaatgtatgaatttccaa
ggcaattgatttaaaaaaggcaaaaaagagtggaatttctgaCGCATTTT
GAagaagtacatggattttcatctGAATTTTTGACCAccattggaaaaaa
aaaaaatttccaaggctagaaaaaataaaaaaatgcacgtcgtccggCGA
GGGGGTAAcagaaattttctggaatggcccaatggcAACCTTTAACCTTT
CTGTCTGTAGAGGGAAATCAATCTAAATGAGTTCTTTTCCATAAGATTCC
CTTCTCCGTTATAAGCCTTAGAGAACGAAATTTCATATACTAAACAGTCC
NATCAATCTAAATGAGTTTTTTTCCATAAGATTCCCTTCTCCGTTTTAAG
CCTTAGAGAACGAAATTTCATATATACTAAACAGTCtacttttgaacttt
ttattcaGAGTTAGGTAAGGCAGTTGCAACACTGGATTTTACTGGTGTTT
TTAATTGAATTCAGACAAAgcaataccgtgagtggtcctaaatccaacag
ccctgcctaaatccgatagggtctttcaaagatacaaactaaaattaaaa
caaacctttcgctgtgacgcaatgaagataccaaagtgccaactaaactg
agagatttgatacattgcACCAAATGAGCCAAAtagaaataacaataatt
gcttcttatagaAAACATAATTCTTTATTGCAATATgtacaacgtcataa
atgacaacagcaataaaacagcatcataaaatgtaattttttttacgatt
cacactttttaaattACCAACATAAATCggcatcttgacattatagccat
attgttagatgttttgtttcgagagttcatgcaatagtttatcgttcaac
ttgaaGAGGGAATGTTTATAAACATAGAATCTTTTTCATAACAgctattt
ggggggtcggaattaggcagggctgtcgggtTTAGGACAGGCTGTCGGGT
TTAAGACCACTCACGGTAGGTCTTTTCAAGGCTACCATACTTTATACACC
TATAACAATCAAAAAGTTCCCTAAAGCAATCAAAAGCGCCAAGATGACAA
AAAGTGGCTTTACAGTACTGGAGCACTTTATatttgattgagattgtctg
aAGACAAATATGTTCTCAAATAATAGCCTTACTTTTGACCAAAATTGAGA
CAGAGAGAACCACCTTTTACATTTTGTTCTTGCATCCATTCTTTTTGTGC
ATGGGCTTTAATAACACTTCAGAAAATTCTATCAATTTTCTTACATTGAC
CAGAAAAAGAAGCATTCTTTTCTTAAAttcatttgtttaaaaatgtttgt
gatttttttatcttttggatcatgatacatttttttattgtttataagTA
AACATTTATAATTATGCAAAGGAAAAAAGGAGATTAGGCTAAATATGTTG
ATTCCCGATCTTAAATTGTTTGATGATACTTTCTACTCATCAGCATGCTA
TTTTTACAAGAAACTGTTATGTGTATAAATTTATCTTGCTGTGACTTGAT
GAAATCTCAATTCAAGACATGCGTCCAAAACAATTAATTTTATTATATAA
CATTGCAATCTGATACCTTAAAAGTATTATAGCACTTAATAGAAACTAAA
TTACACACAAAAATGTTTAATAAGGTTTGTCTAAAGCCTTGTCAAAGTGT
TTAAAAGATGATTTTGATATGtacgaaaataatcaaaaaggttatttatt
ttctttcttttcatttaagCCTAAATGTTGGTTGTGGCCCTGCCGAGGAG
AGAATTTTATTAACTGGATTACATGCTGTAGCTgatatttattgtgaaaa
ttgCAAAACAACCTTAGGTTGGAAATATGTAAGCCATTTTATTTTTCCCA
AATTATAAGTTGATtgcttttttaattatttgtaATTGATCTACCATTTA
TATAAATGACCATGTTGCAAGAAAGCTCAGATCACGGTATCATACAAAGA
TATTTCTTGTCACAAGTGACAATCTTTGAATCAGACTGCTACAATAGAAT
TAAGCATATTTTTCtcacatgaaaacatgctttttaataaaaaaaaatac
atgaaaaggATCAGTTGACTTCCTTCATGAGGTATAAATAATTAAGAAAT
AGAATCAAATCATTGAATAGTgttttgctgattttttaaatcaatactTT
CTTATATTCGGTATCAAAGTGATGTTATGGAGCAGGTTGTATTCAGCTTG
AGAATCATCCCTCCTTAGAACCACCTTTCCGATATCACAAAAGTCAATGA
TAATTGCATAAAGCCATAGCAACAAACGTTATTTTTAACATCGTTGAGTT
ATTTTTGGGATTGAAATGAACAATTTCAACAGTATCAGGTGAATCTTCTG
TCAGAAGtccaaaaataaggaaaaaaaagTCTAACATTTACTAGTAATAA
ATTTCAtgaagaaaataatatttttcccgTGTTTGTGAAATctgaattaa
ttttttgttctcCCGATGAAAAGAATTGATTTGAGGAAATATAATTTCTT
CCTTGAATTTAATAACGTTTCTTTTGCTCAAGgacgaaaaaaatgaaatc
acaaGAAACTTCAATATTAAACGTATATATTAGAAGATTTGTCTTCCTAA
ACCAACACTAAAAAACCTGCCTTTAAGAATATATATTCTcaaagaaaagc
aaaacaaaaatagaGACAGCTTATCTTAATTTGACGACAAAATGAAGACA
AGTAATAACTTGTGATTATAAAAAAAGCCAGTCAGATATTCTAGTATCCC
CTTTTTCgtctaataaaaacaaaagtatgTCAAACTTTGCTAtaaatagt
tttgaaatgaTATTTTATGTCAGGTATACAAAAGGTTGTACTAAGTTAAC
AAAATCATATGTACTTTTCACCGGtcaaaaacttaaaacaaaatgctttt
aatGTCTTTCTATGCTTGTGTATTTCTAGCATCATACCATCCCGTGTCAT
ACTGTTGATATGGTTTTTAGGGATATTAGTTATCACAAAGCCTTTCAATC
ATCTTAGATTACCTCCCAGCCCTtgctatttcttttcaatttgaGTTGAA
TTACATTTAAAACAGTCCATTCAGCAAAAATGAAACTATCTTAAAAGTAT
CTTGTATCTGAAAAAgcaaattaaaattcagaaacaacgCATGTTaagct
aaaagtcaaaaacattaaaGCACTGGTCTTGACAAGATGAATGGGATGCC
ACAGAGCGTGGAACTACTTCCAAGTATAATCCAGAAATCACAAGCATCAA
CATTATTGGAAAACTACAAGCTTTAAATCAGCGTtagtaatcaatttttt
ttatttcttctgTAGGAACACGCATTTGAAAGCAGCCAAAAATATAAAGA
AGGTAAATTCATTATTGAAATGGCACACATGCTCAAAGAAAATGGCTGGG
AATAAAACAATGGCTTTGCTACAACGATATGTTTATCTTAAGAAGTTTGA
TTAGTTAGAAACCAGTTAGAGTTACCATTGAATGATCTAAAAATCGAGTT
GTTTTGGCCAACGTTTTTGTATGTTCTTGGTGTATTCATCATCAACTTGT
TTATCGTTAATGTAAATATTATGGAGATAAGATTACTATGGAGGTAAGTG
GATGCCATCTTTTTTGTTAATCAGAGCTTTTCTACGAAATCattctttca
ctttcgttttttttttcaaaatgaaacattCAATCTTCATTatcattatt
gttattattagtattaAAAAACTAACCCTGTAAATATTGTATATTATTAT
TCatttaaaaaactaaaagatgtattttgtatTTACccctttaaagtttt
tttggttACCAGAACATGGAGTCTTTAAAAATGATGCCTGTATTTGAGAA
CACACATTTTACTTATACTGGTTTAACCTTGCTTTTGATTTTTGTGTTTA
TTCATgtttcaacaattttttgatgattttttgacttttttactaAGAAG
TTCTTCAAGTTGTCAAAATCTTGATTTTACGGTTCTAATGAGCTCCTAAT
GAGAAATtattaatgcaaatttaaacaagatttatcaaaactttataatc
ATCAATTTTTATGATGGAATAGCATTGTTATTTTTCAGGTGTTTGAAGTT
TTAAAAGTTCTTGTTTGTTGAACCACTCTTTTTTTAgacgattttctgaa
aatttcttttgggaAATGATTTTGTCACGTGATTTTGTCTTGTGATTTTG
TGATAGAAATCTTGGATATTtgaaatgattatcttttttgaTAATCTCAG
TCATCCAAGTAATAATAATATTGGAAGGAATTGAAACGAAGAATTTGAAC
GTGATAACGACCAGGAATTAGGAAAAAGTAATTCCTGTTTTAAATTAGTT
CTTTGTCTTAGTAAAGTTGATAAGGAAAATGAATTTATACATGAATCAGT
CGAAAATGAAACGTTTTCCTCTCGTTATAATGGTTAGAGTTTTTTAACCA
ATTTTGTCTTAGTGTTCGTGCGTTGTATGTACATACTTTTGACCTTGcct
tttaaaaatgcttttaatttaTCTAAAAGCTGTTTGAAGTATTTGAAGAA
GAAATCACTTTCTTCCGAAAACTTCACTCTTGTAAAtaattttgtacaaa
aaattttgatttaattttattttattttcagttatatgataatatattat
ttgattttttttcggtcaacGCAAAATACATTTTGTATGATAAAATGTTA
TGTACAGGATCTCATGTGTACATAGAAGCTGGTATTCATTTGTTTTGCAT
AAGACTAGGTACAGGTACCTTTGGGACTGGTTCTCTGTGTATCTCAATGT
TCAAGTCTTAAAGATAACTAAGTGTCTTtaccagaaaaattttttaccta
caaaaagtcaaaaatttgtcgaaaataatttttaaatacatttaggatcc
attttcataactttttttctatacgATTTGCATTTTGATATTGGCTGACA
TTTTGAGACTTTTAGAACGTTAATAGGGATAAATTATATGTTATTTTTTA
CAACCAAGTATATCTAGCTACATTTTAAGACAAGATTTTTCTACTGGTTA
GATTATGTTTTGTTTGATATATTAAAAGTTGTAAGATTGCTAGAGTTTTA
ACCATAACTATATTTTTTGTCTCTAGTTCAGGAAGATTCAATACTTTTTC
CTCTATTGTGAATTATTCTCGATTTCATGCGGAAGGGAAAATGGGGAAAG
TTTGTTTGtaatagattttcatttttatccttCCTAAGCGAcgaatgaaa
aaattattttttgagaattttctctcggtagattttttttcggtgAAATT
TACTTTGAAAACTTACAAACCGACtttgcttgatttttttttgcatttct
gaCACCCACGTGTGCGTGGACAGAATGTAAAAAGTTTGATCTTAGCTTAT
ATAGTTCATCATTGTAATTTGTAGAGCTTTATACTTAGGAAAGAACtgtt
tatttttcctttttcaaggTAGCTAAGGCGACCAATTATAAATATAAGaa
gatttttcctctctaaGCTTGCGAGTGAAGATTCCCTACTTATATTTACC
TTAGCAGCTCTGTAGCTTCCTGAAAGTGTTTTTTTCGCAGCTACATCAAC
GTTTGACTTCGTGGATTTCTTTccgtttaaaaattttttccttgtgaaat
aatgaattttgttaaatttattttctacttttcaaTTTATGCTCGTCACT
TTCTATGACATCACAGTGATAATTTTCTCAAACCTTCTTACATTTTTGGC
CTATTATCTTGAAAGATTTGGTAGATttgaaaacaactttttttgttCAT
AGAACCGGTAAACTTTCTCAGAGAACATTCTAGAAATTTCCCTCCTTTAT
GCACCCAGTTGGTAAACATACTCTAGGTTCTCTGAGAAAGTTTTCCtcta
gaaaagaaaatctttttactaactgattgtataaaaataatgtACATTTT
TCTAGTAttgaacatttttgttttgaaagaagaaagaaaagttcTGGCAT
Ggcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058218-exon-scaffold_309-1491911889:119178..119439 | TCONS_00058218-exon-scaffold_309-1491911889:119178..119439 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1510915933:119178..119439 | TCONS_00058218-exon-scaffold_309-1510915933:119178..119439 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1575043694:119178..119439 | TCONS_00058218-exon-scaffold_309-1575043694:119178..119439 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1491911889:121797..121905 | TCONS_00058218-exon-scaffold_309-1491911889:121797..121905 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1510915933:121797..121905 | TCONS_00058218-exon-scaffold_309-1510915933:121797..121905 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1575043694:121797..121905 | TCONS_00058218-exon-scaffold_309-1575043694:121797..121905 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1491911889:123393..126082 | TCONS_00058218-exon-scaffold_309-1491911889:123393..126082 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1510915933:123393..126082 | TCONS_00058218-exon-scaffold_309-1510915933:123393..126082 | Clytia hemisphaerica | exon |
| TCONS_00058218-exon-scaffold_309-1575043694:123393..126082 | TCONS_00058218-exon-scaffold_309-1575043694:123393..126082 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_309 | supercontig | scaffold_309:119178..126082 + |
Blast
BLAST of TCONS_00058218 vs. Swiss-Prot (Human)
Match: YPEL1 (Protein yippee-like 1 OS=Homo sapiens GN=YPEL1 PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 6.478e-41 Identity = 60/65 (92.31%), Postives = 65/65 (100.00%), Query Frame = 3
Query: 264 LNVGCGPAEERILLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIEMAHMLKENGWE 458
+NVGCGPAEER+LLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIE+AHM+K+NGWE
Sbjct: 55 VNVGCGPAEERVLLTGLHAVADIYCENCKTTLGWKYEHAFESSQKYKEGKFIIELAHMIKDNGWE 119 HSP 2 Score: 53.5286 bits (127), Expect = 6.478e-41 Identity = 24/33 (72.73%), Postives = 30/33 (90.91%), Query Frame = 2
Query: 164 KTFRAYLPQSAYRKYSCVHCRAHLASHDDLISK 262
KTF+AYLP + +R YSC+HCRAHLA+HD+LISK
Sbjct: 8 KTFQAYLP-NCHRTYSCIHCRAHLANHDELISK 39
The following BLAST results are available for this feature:
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