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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058216 ID=TCONS_00058216|Name=TCONS_00058216|organism=Clytia hemisphaerica|type=transcript|length=1429bpRun BLAST on NCBI transcript from alignment at scaffold_309:80737..116466+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058216 ID=TCONS_00058216|Name=TCONS_00058216|organism=Clytia hemisphaerica|type=transcript|length=35730bp|location=Sequence derived from alignment at scaffold_309:80737..116466+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058216 vs. Swiss-Prot (Human)
Match: AEDO (2-aminoethanethiol dioxygenase OS=Homo sapiens GN=ADO PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 5.348e-24 Identity = 43/158 (27.22%), Postives = 80/158 (50.63%), Query Frame = 1
Query: 109 IVKQVAKQALNTFKF---------------TESSL---FPSQFEKLLTLAEKIKETDVGLD----SELKEQTSDAPVTFINIYEGSIFTLGIFIIRKGHSLPLHDHPGMFGVCKPLFGTLHVKSYQRLEERFVGGEKVTGEAGESRISRPMSSVDTNA 516
+++++A+QA TF+ E+ + FP KL +L +++ D+ + + + PVT+++IYE F+LG+F+++ G S+PLHDHPGM G+ K L+GT+ + +L+ GG++ E + P+ + A
Sbjct: 9 LIQRIARQACLTFRGSGGGRGASDRDAASGPEAPMQPGFPENLSKLKSLLTQLRAEDLNIAPRKATLQPLPPNLPPVTYMHIYETDGFSLGVFLLKSGTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAG--GGQRPRALPPEQQFEPPLQPREREA 164 HSP 2 Score: 61.2326 bits (147), Expect = 5.348e-24 Identity = 36/91 (39.56%), Postives = 46/91 (50.55%), Query Frame = 2
Query: 500 VLTPMLGNFHTISAVREDAAIFDILSPPY--TNGRDCSYYRELS---TEEQKSYGIDLSSEERSNGLTFLKQIPPPASFYCDSKEYKGPII 757
+LTP N H I AV AA DIL+PPY +GRDC YYR L +E S DL E +L + P F+C+ + Y GP +
Sbjct: 184 ILTPHRDNLHQIDAVEGPAAFLDILAPPYDPDDGRDCHYYRVLEPVRPKEASSSACDLPRE------VWLLETPQADDFWCEGEPYPGPKV 268 The following BLAST results are available for this feature:
BLAST of TCONS_00058216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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