TCONS_00058209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058209
Unique NameTCONS_00058209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length862

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058209 ID=TCONS_00058209|Name=TCONS_00058209|organism=Clytia hemisphaerica|type=transcript|length=862bp
CTGCATTTTAATTCCATATGTTTTAGGTCTTCTTATTTAATACACCTCTG
TATTGGCGACCTCCCAAAGTCGCCGAACATACCATGCGATTGTTACCCAT
ACTGTGAACGTTGAAATTTAACAGAGGTCCTTTCGAATTNTAATAAACAA
ATTTCCTCTAGCTTTAGTTTCGAAGATTGCTGCTATAGGTACACAGAGAT
ACGCGGTAGTAAGTTTGTTTATAGCAGATTTTAAAAACAATCCACGATCC
TGAATGCTTCTACCAGCCACAACTCTTGAAAAATGGTAcacaatttctgc
attttaattCCATATGTTTTAGGTCTTCTTATTTAATACACCTCTGTATT
GGCGACCTCCCAAAGTCGCCGAACATACCATGCGATTGTTACCCATACTG
TGAACGTTGAAATTTAACAGAGGtcctttcgaatttttttcgcCTTTCGG
TTTAGGTGCTACTCCTGTTAGTGATGTTCTATTCCCTGACTGAGCCCTGC
TGCTTAAATCTGCTGCCCTGATAAGGGGTGGTACGGGTGGGATTACGCGT
CTGTTTGATGATGAGTGTGAGCTGGAATGGGTGGTCGAGGGCGCCGTGTT
TGAACTTCTCTGACTTTGATATACAGTGAATGCTGAAGTGTGGTCTCTCT
TTCTGACTGATTGTTGATTTGTGCTTGATGTTGACGAATTCTTCGCGTCC
ATTGGTTTGTTGCGTTTGTTTGAATCCATTTTGTATGATGATGTGTGATT
CATAGTCGTTCGTCTGTATTTCTGTGTTTATGTGAGTTTTATTTGATGAC
TCgttaattaaatttttgttaGTAATTATTTCTTGTCTGTTTCGACAGTA
CTTTTCCTCGCC
Run BLAST on NCBI

protein sequence of TCONS_00058209-protein

>TCONS_00058209-protein ID=TCONS_00058209-protein|Name=TCONS_00058209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MNHTSSYKMDSNKRNKPMDAKNSSTSSTNQQSVRKRDHTSAFTVYQSQRS
SNTAPSTTHSSSHSSSNRRVIPPVPPLIRAADLSSRAQSGNRTSLTGVAP
KPKGEKNSKGPLLNFNVHSMGNNRMVCSATLGGRQYRGVLNKKT
Run BLAST on NCBI

transcript from alignment at scaffold_308:100209..101070

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058209 ID=TCONS_00058209|Name=TCONS_00058209|organism=Clytia hemisphaerica|type=transcript|length=862bp|location=Sequence derived from alignment at scaffold_308:100209..101070 (Clytia hemisphaerica)
GGCGAGGAAAAGTACTGTCGAAACAGACAAGAAATAATTACtaacaaaaa
tttaattaacGAGTCATCAAATAAAACTCACATAAACACAGAAATACAGA
CGAACGACTATGAATCACACATCATCATACAAAATGGATTCAAACAAACG
CAACAAACCAATGGACGCGAAGAATTCGTCAACATCAAGCACAAATCAAC
AATCAGTCAGAAAGAGAGACCACACTTCAGCATTCACTGTATATCAAAGT
CAGAGAAGTTCAAACACGGCGCCCTCGACCACCCATTCCAGCTCACACTC
ATCATCAAACAGACGCGTAATCCCACCCGTACCACCCCTTATCAGGGCAG
CAGATTTAAGCAGCAGGGCTCAGTCAGGGAATAGAACATCACTAACAGGA
GTAGCACCTAAACCGAAAGgcgaaaaaaattcgaaaggaCCTCTGTTAAA
TTTCAACGTTCACAGTATGGGTAACAATCGCATGGTATGTTCGGCGACTT
TGGGAGGTCGCCAATACAGAGGTGTATTAAATAAGAAGACCTAAAACATA
TGGaattaaaatgcagaaattgtgTACCATTTTTCAAGAGTTGTGGCTGG
TAGAAGCATTCAGGATCGTGGATTGTTTTTAAAATCTGCTATAAACAAAC
TTACTACCGCGTATCTCTGTGTACCTATAGCAGCAATCTTCGAAACTAAA
GCTAGAGGAAATTTGTTTATTANAATTCGAAAGGACCTCTGTTAAATTTC
AACGTTCACAGTATGGGTAACAATCGCATGGTATGTTCGGCGACTTTGGG
AGGTCGCCAATACAGAGGTGTATTAAATAAGAAGACCTAAAACATATGGA
ATTAAAATGCAG

Coding sequence (CDS) from alignment at scaffold_308:100209..101070

>TCONS_00058209 ID=TCONS_00058209|Name=TCONS_00058209|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_308:100209..101070 (Clytia hemisphaerica)
ATGAATCACACATCATCATACAAAATGGATTCAAACAAACGCAACAAACC
AATGGACGCGAAGAATTCGTCAACATCAAGCACAAATCAACAATCAGTCA
GAAAGAGAGACCACACTTCAGCATTCACTGTATATCAAAGTCAGAGAAGT
TCAAACACGGCGCCCTCGACCACCCATTCCAGCTCACACTCATCATCAAA
CAGACGCGTAATCCCACCCGTACCACCCCTTATCAGGGCAGCAGATTTAA
GCAGCAGGGCTCAGTCAGGGAATAGAACATCACTAACAGGAGTAGCACCT
AAACCGAAAGgcgaaaaaaattcgaaaggaCCTCTGTTAAATTTCAACGT
TCACAGTATGGGTAACAATCGCATGGTATGTTCGGCGACTTTGGGAGGTC
GCCAATACAGAGGTGTATTAAATAAGAAGACCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036680XLOC_036680Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058209-proteinTCONS_00058209-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058209-exon-scaffold_308-1491911889:100209..101070TCONS_00058209-exon-scaffold_308-1491911889:100209..101070Clytia hemisphaericaexon
TCONS_00058209-exon-scaffold_308-1510915933:100209..101070TCONS_00058209-exon-scaffold_308-1510915933:100209..101070Clytia hemisphaericaexon
TCONS_00058209-exon-scaffold_308-1575043694:100209..101070TCONS_00058209-exon-scaffold_308-1575043694:100209..101070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:100209..101070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.651965	0.529807	0.123031	0.0601835	0.366338	0.289485	0.908054	0.980895	0.274699	1.7013	0.495396	0.144735	1.22854	0.562874	0.308506	0.198644	0	0.20902	0.462035	0.664794	0.0525297	0	0.560647	0.283172	0	0	0.148995	0	0.120605	0.0614387
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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