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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058206 ID=TCONS_00058206|Name=TCONS_00058206|organism=Clytia hemisphaerica|type=transcript|length=799bp
gtttttagacGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAAGGC
ATATCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATGTACCA
TCCTTGGACAAAAGCCTTCAACCAACAACAGGACCTGTATTAGGACCTCT
ATGGGTATCCAAAGGAGAGAGATTCAGTCCCAAAGGAGCACATAACTTTT
TGAATACAATGATTCAAAATACCAAAGATCGCATCAAATCTACAAATATA
TATTTAGCAAAGCTACATGAAGAAATGGCTTCAGAAAATTCATACTTCAC
CCtggcagaaattgaaattgagaTTGACCAAGAAGATTTAACATTAGCTG
GTCTAGAGCGTGCTCTGCCACCATTGGAAAATTACttgaaaaacatccaa
agactTTGCAAAGAAGAAGAAGCATCTTTGACGCCATCTTCCTATAAATT
CAAACATATCTCAGAGATTGATACGTCCAGTCGCTTACTAACTACACCTG
GTATCAAAATTCGTTTGTATGTCAATGGACGGAAAAGAGAGGTCGGACCC
ATAAAGGTGTTTGTCAATATAGCAGATTTGAAAAAAGGAACTAAAACACA
AGGAGAAGTCATGACAAGATTCTTCGATTTGGTCAATATGAATCCTAATA
TAAGACCCTTGTTCGGTATCAAAGCGAATAGAGTTTATGTTAAAAGAGCA
TTTTTGTTGAATGGTTCTGAAGTGATAGATATTGGTTTGCTGGAACCTGG
TCAAGAATTATGGTTGTCCCTTGGTGAAGGTTTCCTACCCATCGAAAGT Run BLAST on NCBI protein sequence of TCONS_00058206-protein >TCONS_00058206-protein ID=TCONS_00058206-protein|Name=TCONS_00058206-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
FLDDCTKKLSLTSSARHIYDWSGKQVENFNNVPSLDKSLQPTTGPVLGPL
WVSKGERFSPKGAHNFLNTMIQNTKDRIKSTNIYLAKLHEEMASENSYFT
LAEIEIEIDQEDLTLAGLERALPPLENYLKNIQRLCKEEEASLTPSSYKF
KHISEIDTSSRLLTTPGIKIRLYVNGRKREVGPIKVFVNIADLKKGTKTQ
GEVMTRFFDLVNMNPNIRPLFGIKANRVYVKRAFLLNGSEVIDIGLLEPG
QELWLSLGEGFLPIES Run BLAST on NCBI transcript from alignment at scaffold_308:206421..207767- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058206 ID=TCONS_00058206|Name=TCONS_00058206|organism=Clytia hemisphaerica|type=transcript|length=1347bp|location=Sequence derived from alignment at scaffold_308:206421..207767- (Clytia hemisphaerica)
GTTTTTAGACGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAAGGC
ATATCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATGGTATA
TTTCTGCATATCGAATATCTTCCTTATCTTTTGTATACTTTTTATTTTGA
CATGGAATTTTTATTGAAAATAAACATTGAATTAGAACTTATTGATAGTT
ATATTCAAAATTTCAATATTTCTTTTACTTCACAATTTGTAACGTTGCAA
TACTGTTCAATTTTAGTACCATCCTTGGACAAAAGCCTTCAACCAACAAC
AGGACCTGTATTAGGACCTCTATGGGTATCCAAAGGAGAGAGATTCAGTC
CCAAAGGAGCACATAACTTTTTGAATACAATGATTCAAAATACCAAAGAT
CGCATCAAATCTACAAATATATATTTAGCAAAGGTGACTTTTCTTGGTTA
ATTTCTAAATTACATCTCCTGAGTTTCCACAGAAGTAAGTAAATAGGAAT
AACCCCCAATTCTAAAATTTTATTTATGCACTCTATAAATAATATCTTTT
TTGAATTTGAAGGATCGCCAAAAAATCAATCTTACATCATGAAAGTCTAT
GAAGAATTTGAAAATAGCATTTTTAATAAAATAAAAGTCATAAAAATTAC
ATTAATACTTACAATTCCTGATTTTTCAGCTACATGAAGAAATGGCTTCA
GAAAATTCATACTTCACCCTGGCAGAAATTGAAATTGAGATTGACCAAGT
AAGTGAATTTACCCAAAAAATTACATTGAATTTTTTTTTGGGTCTATGAA
GATAAATCTGTTAACATTGCCTCCAGCTCAATGTCAGCATCATTAAAACT
ACAAATTTGTGAAATGATTTCTTCTTTAGGAAGATTTAACATTAGCTGGT
CTAGAGCGTGCTCTGCCACCATTGGAAAATTACTTGAAAAACATCCAAAG
ACTTTGCAAAGAAGAAGAAGCATCTTTGACGCCATCTTCCTATAAATTCA
AACATATCTCAGAGATTGATACGTCCAGTCGCTTACTAACTACACCTGGT
ATCAAAATTCGTTTGTATGTCAATGGACGGAAAAGAGAGGTCGGACCCAT
AAAGGTGTTTGTCAATATAGCAGATTTGAAAAAAGGAACTAAAACACAAG
GAGAAGTCATGACAAGATTCTTCGATTTGGTCAATATGAATCCTAATATA
AGACCCTTGTTCGGTATCAAAGCGAATAGAGTTTATGTTAAAAGAGCATT
TTTGTTGAATGGTTCTGAAGTGATAGATATTGGTTTGCTGGAACCTGGTC
AAGAATTATGGTTGTCCCTTGGTGAAGGTTTCCTACCCATCGAAAGT Coding sequence (CDS) from alignment at scaffold_308:206421..207767- >TCONS_00058206 ID=TCONS_00058206|Name=TCONS_00058206|organism=Clytia hemisphaerica|type=CDS|length=3192bp|location=Sequence derived from alignment at scaffold_308:206421..207767- (Clytia hemisphaerica)
GAAGATTTAACATTAGCTGGTCTAGAGCGTGCTCTGCCACCATTGGAAAA
TTACTTGAAAAACATCCAAAGACTTTGCAAAGAAGAAGAAGCATCTTTGA
CGCCATCTTCCTATAAATTCAAACATATCTCAGAGATTGATACGTCCAGT
CGCTTACTAACTACACCTGGTATCAAAATTCGTTTGTATGTCAATGGACG
GAAAAGAGAGGTCGGACCCATAAAGGTGTTTGTCAATATAGCAGATTTGA
AAAAAGGAACTAAAACACAAGGAGAAGTCATGACAAGATTCTTCGATTTG
GTCAATATGAATCCTAATATAAGACCCTTGTTCGGTATCAAAGCGAATAG
AGTTTATGTTAAAAGAGCATTTTTGTTGAATGGTTCTGAAGTGATAGATA
TTGGTTTGCTGGAACCTGGTCAAGAATTATGGTTGTCCCTTGGTGAAGGT
TTCCTACCCATCGAAAGTCTACATGAAGAAATGGCTTCAGAAAATTCATA
CTTCACCCTGGCAGAAATTGAAATTGAGATTGACCAATACCATCCTTGGA
CAAAAGCCTTCAACCAACAACAGGACCTGTATTAGGACCTCTATGGGTAT
CCAAAGGAGAGAGATTCAGTCCCAAAGGAGCACATAACTTTTTGAATACA
ATGATTCAAAATACCAAAGATCGCATCAAATCTACAAATATATATTTAGC
AAAGTTTTTAGACGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAA
GGCATATCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATGGA
AGATTTAACATTAGCTGGTCTAGAGCGTGCTCTGCCACCATTGGAAAATT
ACTTGAAAAACATCCAAAGACTTTGCAAAGAAGAAGAAGCATCTTTGACG
CCATCTTCCTATAAATTCAAACATATCTCAGAGATTGATACGTCCAGTCG
CTTACTAACTACACCTGGTATCAAAATTCGTTTGTATGTCAATGGACGGA
AAAGAGAGGTCGGACCCATAAAGGTGTTTGTCAATATAGCAGATTTGAAA
AAAGGAACTAAAACACAAGGAGAAGTCATGACAAGATTCTTCGATTTGGT
CAATATGAATCCTAATATAAGACCCTTGTTCGGTATCAAAGCGAATAGAG
TTTATGTTAAAAGAGCATTTTTGTTGAATGGTTCTGAAGTGATAGATATT
GGTTTGCTGGAACCTGGTCAAGAATTATGGTTGTCCCTTGGTGAAGGTTT
CCTACCCATCGAAAGTCTACATGAAGAAATGGCTTCAGAAAATTCATACT
TCACCCTGGCAGAAATTGAAATTGAGATTGACCAATACCATCCTTGGACA
AAAGCCTTCAACCAACAACAGGACCTGTATTAGGACCTCTATGGGTATCC
AAAGGAGAGAGATTCAGTCCCAAAGGAGCACATAACTTTTTGAATACAAT
GATTCAAAATACCAAAGATCGCATCAAATCTACAAATATATATTTAGCAA
AGTTTTTAGACGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAAGG
CATATCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATGGAAG
ATTTAACATTAGCTGGTCTAGAGCGTGCTCTGCCACCATTGGAAAATTAC
TTGAAAAACATCCAAAGACTTTGCAAAGAAGAAGAAGCATCTTTGACGCC
ATCTTCCTATAAATTCAAACATATCTCAGAGATTGATACGTCCAGTCGCT
TACTAACTACACCTGGTATCAAAATTCGTTTGTATGTCAATGGACGGAAA
AGAGAGGTCGGACCCATAAAGGTGTTTGTCAATATAGCAGATTTGAAAAA
AGGAACTAAAACACAAGGAGAAGTCATGACAAGATTCTTCGATTTGGTCA
ATATGAATCCTAATATAAGACCCTTGTTCGGTATCAAAGCGAATAGAGTT
TATGTTAAAAGAGCATTTTTGTTGAATGGTTCTGAAGTGATAGATATTGG
TTTGCTGGAACCTGGTCAAGAATTATGGTTGTCCCTTGGTGAAGGTTTCC
TACCCATCGAAAGTCTACATGAAGAAATGGCTTCAGAAAATTCATACTTC
ACCCTGGCAGAAATTGAAATTGAGATTGACCAATACCATCCTTGGACAAA
AGCCTTCAACCAACAACAGGACCTGTATTAGGACCTCTATGGGTATCCAA
AGGAGAGAGATTCAGTCCCAAAGGAGCACATAACTTTTTGAATACAATGA
TTCAAAATACCAAAGATCGCATCAAATCTACAAATATATATTTAGCAAAG
TTTTTAGACGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAAGGCA
TATCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATGGAAGAT
TTAACATTAGCTGGTCTAGAGCGTGCTCTGCCACCATTGGAAAATTACTT
GAAAAACATCCAAAGACTTTGCAAAGAAGAAGAAGCATCTTTGACGCCAT
CTTCCTATAAATTCAAACATATCTCAGAGATTGATACGTCCAGTCGCTTA
CTAACTACACCTGGTATCAAAATTCGTTTGTATGTCAATGGACGGAAAAG
AGAGGTCGGACCCATAAAGGTGTTTGTCAATATAGCAGATTTGAAAAAAG
GAACTAAAACACAAGGAGAAGTCATGACAAGATTCTTCGATTTGGTCAAT
ATGAATCCTAATATAAGACCCTTGTTCGGTATCAAAGCGAATAGAGTTTA
TGTTAAAAGAGCATTTTTGTTGAATGGTTCTGAAGTGATAGATATTGGTT
TGCTGGAACCTGGTCAAGAATTATGGTTGTCCCTTGGTGAAGGTTTCCTA
CCCATCGAAAGTCTACATGAAGAAATGGCTTCAGAAAATTCATACTTCAC
CCTGGCAGAAATTGAAATTGAGATTGACCAATACCATCCTTGGACAAAAG
CCTTCAACCAACAACAGGACCTGTATTAGGACCTCTATGGGTATCCAAAG
GAGAGAGATTCAGTCCCAAAGGAGCACATAACTTTTTGAATACAATGATT
CAAAATACCAAAGATCGCATCAAATCTACAAATATATATTTAGCAAAGTT
TTTAGACGATTGTACGAAAAAGTTGTCATTGACTTCAAGTGCAAGGCATA
TCTATGATTGGTCTGGAAAGCAAGTTGAAAACTTTAATAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058206-exon-scaffold_308-1575043694:207673..207767 | TCONS_00058206-exon-scaffold_308-1575043694:207673..207767 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1575043694:207335..207501 | TCONS_00058206-exon-scaffold_308-1575043694:207335..207501 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1575043694:207020..207088 | TCONS_00058206-exon-scaffold_308-1575043694:207020..207088 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1575043694:206421..206888 | TCONS_00058206-exon-scaffold_308-1575043694:206421..206888 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1510915933:207673..207767 | TCONS_00058206-exon-scaffold_308-1510915933:207673..207767 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1510915933:207335..207501 | TCONS_00058206-exon-scaffold_308-1510915933:207335..207501 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1510915933:207020..207088 | TCONS_00058206-exon-scaffold_308-1510915933:207020..207088 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1510915933:206421..206888 | TCONS_00058206-exon-scaffold_308-1510915933:206421..206888 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1491911889:207673..207767 | TCONS_00058206-exon-scaffold_308-1491911889:207673..207767 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1491911889:207335..207501 | TCONS_00058206-exon-scaffold_308-1491911889:207335..207501 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1491911889:207020..207088 | TCONS_00058206-exon-scaffold_308-1491911889:207020..207088 | Clytia hemisphaerica | exon |
| TCONS_00058206-exon-scaffold_308-1491911889:206421..206888 | TCONS_00058206-exon-scaffold_308-1491911889:206421..206888 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_308 | supercontig | scaffold_308:206421..207767 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003533 | Doublecortin_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0035556 | intracellular signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0035556 |
intracellular signal transduction |
Blast
The following BLAST results are available for this feature:
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