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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058203 ID=TCONS_00058203|Name=TCONS_00058203|organism=Clytia hemisphaerica|type=transcript|length=3499bpRun BLAST on NCBI protein sequence of TCONS_00058203-protein >TCONS_00058203-protein ID=TCONS_00058203-protein|Name=TCONS_00058203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=824bp MVQNEMSLQASSSTNSQQRRWNHRLINRLLVYLVFLNSALNHVTSSEPKPRun BLAST on NCBI transcript from alignment at scaffold_308:166426..179199- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058203 ID=TCONS_00058203|Name=TCONS_00058203|organism=Clytia hemisphaerica|type=transcript|length=12774bp|location=Sequence derived from alignment at scaffold_308:166426..179199- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_308:166426..179199- >TCONS_00058203 ID=TCONS_00058203|Name=TCONS_00058203|organism=Clytia hemisphaerica|type=CDS|length=24750bp|location=Sequence derived from alignment at scaffold_308:166426..179199- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058203 vs. Swiss-Prot (Human)
Match: NEC1 (Neuroendocrine convertase 1 OS=Homo sapiens GN=PCSK1 PE=1 SV=2) HSP 1 Score: 593.964 bits (1530), Expect = 0.000e+0 Identity = 321/606 (52.97%), Postives = 409/606 (67.49%), Query Frame = 3
Query: 411 KPTKFFTNGWAVKIAGTDHNERVKRIADKYGFDKISKIGTLEGYYHLEHPRHPPRSKRSIESQTSVLRLDNEVIWAEQQHEYVRHKRGVHHQRIQTRGIQPQFADPLWEEQWYLDDKRTSMGL---DVNVIPVWNAGVSGKGVVVTILDDGIEHNHTDLVKNYDAAASWDVNDNDPDPMPRYDPTNENKHGTRCAGEVAAQANNSVCGVGVAFNARIGGVRMLDGRVTDRVEAESLSLNPQYIDIYSASWGPSDDGMTVEGPGTLATAAFQNGINKGRGGLGSIYVWASGNGGRHDDSCNCDGXXXXXXXXXXXXXXDHGESPWYSEACASTLATTLSSGAHGEKRIVTTDLRNQCTERHTGTXXXXXXXXXXXXXXXEKNRKLTWRDVQHLVAHTANWIPLKNDPDWRMNGIGLHVNEKFGFGLLDAERLVKLADPATFKSVPPKHECSGEKTS-STKTLSWDQPLQLEIESDGCQNTGNEIRYIEQVQLLLSIDYTRRGDLTIFLTSPMGTKSCLLPIRSEDSSDEGFHRWPFMTTHAWGEDPRGKWILEIKDGGESRSKTGFLKDWQLVIHGTKEKPDHQNITHPDIPTHKKAVSDDTHKPEK 2216
K + F N WA +I G E IA++ G+D + +IG+LE +Y +H HP RS+RS T L D+ VIWAEQQ+E R KR F DP+W +QWYL D R + L D++VIPVW G++GKGVV+T+LDDG+E NHTD+ NYD AS+D NDND DP PRYDPTNENKHGTRCAGE+A QANN CGVGVA+N+++GG+RMLDG VTD +EA S+ NP ++DIYSASWGP+DDG TVEGPG LA AF+ G+ +GR G GSI+VWASGNGGR D+C+CDGYT SIYT+SISS+S G SPWY+E C+STLAT+ SSG + ++RI + DL N CTE HTGTSASAPLAAGI ALALE N LTWRD+QHLV T+ + PL N+P W+ NG GL VN +FGFGLL+A+ LV LADP T++SVP K EC + + L + + +EI + C+ N I+ +E VQ +I+Y+RRGDL + LTS GT + LL R D+S GF W FM+ H WGE+P G W L I D G + +W+L++HGT +P+H + P + T V +D EK
Sbjct: 26 KAKRQFVNEWAAEIPGGP--EAASAIAEELGYDLLGQIGSLENHYLFKHKNHPRRSRRSAFHITKRLSDDDRVIWAEQQYEKERSKRSALRDSALNL-----FNDPMWNQQWYLQDTRMTAALPKLDLHVIPVWQKGITGKGVVITVLDDGLEWNHTDIYANYDPEASYDFNDNDHDPFPRYDPTNENKHGTRCAGEIAMQANNHKCGVGVAYNSKVGGIRMLDGIVTDAIEASSIGFNPGHVDIYSASWGPNDDGKTVEGPGRLAQKAFEYGVKQGRQGKGSIFVWASGNGGRQGDNCDCDGYTDSIYTISISSASQQGLSPWYAEKCSSTLATSYSSGDYTDQRITSADLHNDCTETHTGTSASAPLAAGIFALALEANPNLTWRDMQHLVVWTSEYDPLANNPGWKKNGAGLMVNSRFGFGLLNAKALVDLADPRTWRSVPEKKECVVKDNDFEPRALKANGEVIIEIPTRACEGQENAIKSLEHVQFEATIEYSRRGDLHVTLTSAAGTSTVLLAERERDTSPNGFKNWDFMSVHTWGENPIGTWTLRITDMSGRIQNEGRIVNWKLILHGTSSQPEH--MKQPRVYTSYNTVQNDRRGVEK 622 The following BLAST results are available for this feature:
BLAST of TCONS_00058203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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