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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058197 ID=TCONS_00058197|Name=TCONS_00058197|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CCCAACCAAATGGTAAATGGGTTGTAAAGGGAGATTTTTAATTCGTACAA
ATACATTTGACTGGGCGGAATAATTTTGTCGGATTagtgaaaatcaaaaa
cataatttcaaaCTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAG
AacgaagaaaaaatgttttctacggaGCCACCTTCAAGTGCTATACGAGT
TTTCAACACCCAGAGTATAGACAGGGATACTCGTCTCTTTCCGTTGACAC
TGAGGAAGACTAGTGACTCATCTATGTTACTGGAAAATGGTGCAGGGAAG
TCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTAtaca
agaaaaagaagaacaagtTGAAATTTCGAATGAGCTTTCATCTATACCAT
CCTTATCACCGAAGCTGGTGAAGAaagaaacaacaacaaatcTATCGCGC
TCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTT
ATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGAT
CCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTC
GATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTT
CATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAAC
AACCAACACCTCCAGATTCTCCCAGATCAGCACCAATATTCCCGTTCAAT
CCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATAC
CACTGAACCATCACATCGTCTCAGAAGATTCGATAGTCTACACCGTTCAA
TCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTT
CACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTC
TGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGCTT
TCTACAGCAGTGAGTTTCTACTccgtcaaaaagaaaaatggcgtcGGCCA
CGAACGGTTTACACTGAGAAGCAACTGGTTTCTCTTGAAAAAGCGTACAA
GAAGAACAAATATCTTCGCGGTGAAGAAAGAAAGGCATTATGTAAAACGC
TTAGCCTGGAGGAACGTCACATTAAAGTGTGGTATCAGAATCGACGGGCT
AAGGAGCGCGGACAAATTCGCCATGATAAATGGCTACAACGTTCCAAACG
CCATCAACTCTTAATGGCTCAACAACAAAAACAGAAGCTGAAACAGAAAG
AAAAGCAAGAAAGATTAAAACCTAATGACGAAGAAACTGAAGCTGGTCTA
ACTCAACAGGATAAATAATTTTCCATCCTTGGACGGCTTGTCTTACAAAG
CTAATATCGTTGAATTTGAAGCTCTATAACAGTTAGAAATATCATTAATA
TTTACCaggaaagaaaaagtgaatccTTTAGATTTGCatcgatacacgtt
ttttttataagaacacccaaaaattttgaagccct Run BLAST on NCBI protein sequence of TCONS_00058197-protein >TCONS_00058197-protein ID=TCONS_00058197-protein|Name=TCONS_00058197-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
MFSTEPPSSAIRVFNTQSIDRDTRLFPLTLRKTSDSSMLLENGAGKSTDY
FYSLYQKAKKTIQEKEEQVEISNELSSIPSLSPKLVKKETTTNLSRSTSL
SSTETGSSSHRSLSPPKSDSPLVAMNIIGSATPRPSSPPELSSINLDDYS
ESRLSGDPKFLDFIRSTSTLSARSSPRIEQPTPPDSPRSAPIFPFNPHSP
SRLAVLDSPQHHTTEPSHRLRRFDSLHRSITSTFHSKQESTNVDSLHRPQ
ECLTGNCKYLFPSERCHVCRPDEFLYQRAFYSSEFLLRQKEKWRRPRTVY
TEKQLVSLEKAYKKNKYLRGEERKALCKTLSLEERHIKVWYQNRRAKERG
QIRHDKWLQRSKRHQLLMAQQQKQKLKQKEKQERLKPNDEETEAGLTQQD
K Run BLAST on NCBI transcript from alignment at scaffold_308:111900..115708- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058197 ID=TCONS_00058197|Name=TCONS_00058197|organism=Clytia hemisphaerica|type=transcript|length=3809bp|location=Sequence derived from alignment at scaffold_308:111900..115708- (Clytia hemisphaerica)
CCCAACCAAATGGTAAATGGGTTGTAAAGGGAGATTTTTAATTCGTACAA
ATACATTTGACTGGGCGGAATAATTTTGTCGGATTAGTGAAAATCAAAAA
CATAATTTCAAACTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGAG
AACGAAGAAAAAATGTTTTCTACGGAGCCACCTTCAAGTGCTATACGAGT
TTTCAACACCCAGAGTATAGACAGGGATACTCGTCTCTTTCCGTTGACAC
TGAGGAAGACTAGTGACTCATCTATGTTACTGGAAAATGGTGCAGGGAAG
TCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTATACA
AGAAAAAGAAGAACAAGTTGAAATTTCGAATGAGCTTTCATCTATACCAT
CCTTATCACCGAAGCTGGTGAAGAAAGAAACAACAACAAATCTATCGCGC
TCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCTT
ATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGAT
CCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCTC
GATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATTT
CATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAAC
AACCAACACCTCCAGATTCTCCCAGATCAGCACCAATATTCCCGTTCAAT
CCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATAC
CACTGAACCATCACATCGTCTCAGAAGATTCGATAGTCTACACCGTTCAA
TCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCTT
CACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGTC
TGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGGTA
ACTTCTAATGTTCAATTCTATTTTCATAAAGGCTTCATTTTCCTTTTTCT
TAACAAAAATTATTAACAATCTACTCGAAATCAAATCGAAGGCAGAACTT
CGAAATTAAGATCCAGCCTTTTCTTTTTCGGGGAAAAGGCCCCGGGCCCG
GGGGGGGGGGTACTCAGGCAAAAATGGTGCTGGGTATGTGTGGATTGACG
GCAAGGGTCTGTTTTTTCACCCTTCAAAGTCTCTCTAAGGGTTTCAAAAT
CGAAGAAAGGGTTACCTTTTCGGGAAAAATCAGTCTCTCTAAGGGTCTGG
TTTAGGAGGTCCAATCCGCACATACTCCTCATCCGCCAACCCTAGTACCC
AATTCAATTCAATTGATTTTATTTGAAAAGATCTCTTCTAAAATTGAAAT
GAAAATCCAGTTAATTTGCAGAGGATAGTGGTATTTAAGATTTCTAATGA
TTATTTGTTGTGTTATTTAGCTTTCTACAGCAGTGAGTTTCTACTCCGTC
AAAAAGAAAAATGGCGTCGGCCACGAACGGTTTACACTNCTTAGGCTTAA
AATAAAAGTCCGGGCTCTCTGGGGTACATAAATTAGACAGGTGCTTTAAA
ACTTGTCATATTGTTTCTGTGTATTCAATATGTCTAATGTGAGTGTTCTT
TGCTGGGAATTCACAAATCAGGCTTATGAAATTGTTCTTATAATCTTATA
TTTTTGCATTAAACATATTGACATTGTATTAAAATGCAGCCGAACAAAAT
CGAAACACTATGACTTTTATTGACTTTTAATAGATGGGTTTTACGTATAA
ACCCAACCAAATGGTAAATGGGTTGTAAAGGGAGATTTTTAATTCGTACA
AATACATTTGACTGGGCGGAATAATTTTGTCGGATTAGTGAAAATCAAAA
ACATAATTTCAAACTCCAAGATTCTTTATTGGATTAGTGTGGTGGAAGGA
GAACGAAGAAAAAATGTTTTCTACGGAGCCACCTTCAAGTGCTATACGAG
TTTTCAACACCCAGAGTATAGACAGGGATACTTGTCTCTTTCCGTTGACA
CTGAGGAAGACTAGTGACTCATCTATAATACTGGAAAATGGTGCAGGGAA
GTCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAAAACTATAC
AAGAAAAAGAAGAACAAGTTGAAATTTCGAATGAGCTTTCATCTATACCA
TCCTTATCACCGAAGCTGGTGAAGAAAGAAACAACAACAAATCTATCGCG
CTCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCATCGATCCT
TATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATATCATTGGA
TCCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCAATCAACCT
CGATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATTCTTGGATT
TCATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAAGGATTGAA
CAACCAACACCTCCAGATTCTCCCAGATCAGCACAAATATTCTCGTTCAA
TCCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACAACACCATA
CCACTGAACCATCACAGCGTCTCAGTAGATTCGATAGTCTACACCGGCCA
ATCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTCGATAGTCT
TCACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCTCTTCCCGT
CTGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATCAGAGAGGT
AACTTCTAATGTTCAATTCTATTTTCATAAAGGCTTCATTTTCCTTTTTC
TTAACAAAAATTATTAACAATCTACTCGAAATCAAATCGAAGGCAGAACT
TCGAAATTAAGATCCAGCTCTTACTTTTACTGGTAAAAGGCACCAGTCAC
GGGGGGGGGGGGACTCAGGCAAAAATGGTGCTGGGTATGTGTGGATTGAC
GGCAAGGGTCTGTTTTTTCACCCTTCAAAGTCTCTCTAAGGGTTTCAAAA
TCGAAGAAAGGGTTACCTTTTCGGGAAAAATCAGTCTCTCTAAGGGTCTG
GTTTAGGAGGTCCAATCCGCACATACTCCTCATCCGCCAACCCTAGTACC
CAATTCAATTCAATTGATTTTATTTGAAAAGATCTCTTCTAAAATTGAAA
TGAAAATCCAGTTAATTTGCAGAGGATAGTGGTATTTAAGATTTCTAATG
ATTATTTGTTGTGTTATTTAGCTTTCTACAGCAGTGAGTTTCTACTCCGT
CAAAAAGAAAAATGGCGTCGGCCACGAACGGTTTACACTGAGAAGCAACT
GGTTTCTCTTGAAAAAGCGTACAAGAAGAACAAATATCTTCGCGGTGAAG
AAAGAAAGGCATTATGTAAAACGCTTAGCCTGGAGGAACGTCACATTAAA
GTGTGGTATCAGAATCGACGGGCTAAGGAGCGCGGACAAATTCGCCATGA
TAAATGGCTACAACGTTCCAAACGCCATCAACTCTTAATGGCTCAACAAC
AAAAACAGAAGCTGAAACAGAAAGAAAAGCAAGAAAGATTAAAACCTAAT
GACGAAGAAACTGAAGCTGGTCTAACTCAACAGGATAAATAATTTTCCAT
CCTTGGACGGCTTGTCTTACAAAGCTAATATCGTTGAATTTGAAGCTCTA
TAACAGTTAGAAATATCATTAATATTTACCAGGAAAGAAAAAGTGAATCC
TTTAGATTTGCATCGATACACGTTTTTTTTATAAGAACACCCAAAAATTT
TGAAGCCCT Coding sequence (CDS) from alignment at scaffold_308:111900..115708- >TCONS_00058197 ID=TCONS_00058197|Name=TCONS_00058197|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_308:111900..115708- (Clytia hemisphaerica)
CTTTCTACAGCAGTGAGTTTCTACTCCGTCAAAAAGAAAAATGGCGTCGG
CCACGAACGGTTTACACTGAGAAGCAACTGGTTTCTCTTGAAAAAGCGTA
CAAGAAGAACAAATATCTTCGCGGTGAAGAAAGAAAGGCATTATGTAAAA
CGCTTAGCCTGGAGGAACGTCACATTAAAGTGTGGTATCAGAATCGACGG
GCTAAGGAGCGCGGACAAATTCGCCATGATAAATGGCTACAACGTTCCAA
ACGCCATCAACTCTTAATGGCTCAACAACAAAAACAGAAGCTGAAACAGA
AAGAAAAGCAAGAAAGATTAAAACCTAATGACGAAGAAACTGAAGCTGGT
CTAACTCAACAGGATAAATAAATGTTTTCTACGGAGCCACCTTCAAGTGC
TATACGAGTTTTCAACACCCAGAGTATAGACAGGGATACTCGTCTCTTTC
CGTTGACACTGAGGAAGACTAGTGACTCATCTATGTTACTGGAAAATGGT
GCAGGGAAGTCGACAGACTATTTTTATAGTTTGTATCAGAAAGCAAAGAA
AACTATACAAGAAAAAGAAGAACAAGTTGAAATTTCGAATGAGCTTTCAT
CTATACCATCCTTATCACCGAAGCTGGTGAAGAAAGAAACAACAACAAAT
CTATCGCGCTCTACGTCTCTATCTTCAACAGAAACTGGCTCTTCAAGTCA
TCGATCCTTATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAATGAATA
TCATTGGATCCGCAACTCCTAGACCATCATCACCTCCAGAGCTATCGTCA
ATCAACCTCGATGACTATTCTGAAAGCAGACTCAGTGGCGATCCCAAATT
CTTGGATTTCATCAGATCCACATCAACTCTTTCAGCCAGATCTTCACCAA
GGATTGAACAACCAACACCTCCAGATTCTCCCAGATCAGCACCAATATTC
CCGTTCAATCCTCACAGTCCTTCCAGACTTGCTGTACTTGATAGTCCACA
ACACCATACCACTGAACCATCACATCGTCTCAGAAGATTCGATAGTCTAC
ACCGTTCAATCACTTCAACATTTCATTCTAAACAAGAGTCTACAAACGTC
GATAGTCTTCACCGTCCTCAAGAATGTTTAACAGGAAATTGTAAATACCT
CTTCCCGTCTGAACGATGCCACGTATGCAGGCCTGATGAATTCCTTTATC
AGAGAGCTTTCTACAGCAGTGAGTTTCTACTCCGTCAAAAAGAAAAATGG
CGTCGGCCACGAACGGTTTACACTGAGAAGCAACTGGTTTCTCTTGAAAA
AGCGTACAAGAAGAACAAATATCTTCGCGGTGAAGAAAGAAAGGCATTAT
GTAAAACGCTTAGCCTGGAGGAACGTCACATTAAAGTGTGGTATCAGAAT
CGACGGGCTAAGGAGCGCGGACAAATTCGCCATGATAAATGGCTACAACG
TTCCAAACGCCATCAACTCTTAATGGCTCAACAACAAAAACAGAAGCTGA
AACAGAAAGAAAAGCAAGAAAGATTAAAACCTAATGACGAAGAAACTGAA
GCTGGTCTAACTCAACAGGATAAATAAATGTTTTCTACGGAGCCACCTTC
AAGTGCTATACGAGTTTTCAACACCCAGAGTATAGACAGGGATACTCGTC
TCTTTCCGTTGACACTGAGGAAGACTAGTGACTCATCTATGTTACTGGAA
AATGGTGCAGGGAAGTCGACAGACTATTTTTATAGTTTGTATCAGAAAGC
AAAGAAAACTATACAAGAAAAAGAAGAACAAGTTGAAATTTCGAATGAGC
TTTCATCTATACCATCCTTATCACCGAAGCTGGTGAAGAAAGAAACAACA
ACAAATCTATCGCGCTCTACGTCTCTATCTTCAACAGAAACTGGCTCTTC
AAGTCATCGATCCTTATCTCCTCCGAAGTCTGATTCACCTCTCGTTGCAA
TGAATATCATTGGATCCGCAACTCCTAGACCATCATCACCTCCAGAGCTA
TCGTCAATCAACCTCGATGACTATTCTGAAAGCAGACTCAGTGGCGATCC
CAAATTCTTGGATTTCATCAGATCCACATCAACTCTTTCAGCCAGATCTT
CACCAAGGATTGAACAACCAACACCTCCAGATTCTCCCAGATCAGCACCA
ATATTCCCGTTCAATCCTCACAGTCCTTCCAGACTTGCTGTACTTGATAG
TCCACAACACCATACCACTGAACCATCACATCGTCTCAGAAGATTCGATA
GTCTACACCGTTCAATCACTTCAACATTTCATTCTAAACAAGAGTCTACA
AACGTCGATAGTCTTCACCGTCCTCAAGAATGTTTAACAGGAAATTGTAA
ATACCTCTTCCCGTCTGAACGATGCCACGTATGCAGGCCTGATGAATTCC
TTTATCAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00058197-exon-scaffold_308-1575043694:114712..115708 | TCONS_00058197-exon-scaffold_308-1575043694:114712..115708 | Clytia hemisphaerica | exon |
| TCONS_00058197-exon-scaffold_308-1575043694:111900..112437 | TCONS_00058197-exon-scaffold_308-1575043694:111900..112437 | Clytia hemisphaerica | exon |
| TCONS_00058197-exon-scaffold_308-1510915933:114712..115708 | TCONS_00058197-exon-scaffold_308-1510915933:114712..115708 | Clytia hemisphaerica | exon |
| TCONS_00058197-exon-scaffold_308-1510915933:111900..112437 | TCONS_00058197-exon-scaffold_308-1510915933:111900..112437 | Clytia hemisphaerica | exon |
| TCONS_00058197-exon-scaffold_308-1491911889:114712..115708 | TCONS_00058197-exon-scaffold_308-1491911889:114712..115708 | Clytia hemisphaerica | exon |
| TCONS_00058197-exon-scaffold_308-1491911889:111900..112437 | TCONS_00058197-exon-scaffold_308-1491911889:111900..112437 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_308 | supercontig | scaffold_308:111900..115708 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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