TCONS_00058190 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058190
Unique NameTCONS_00058190
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058190 ID=TCONS_00058190|Name=TCONS_00058190|organism=Clytia hemisphaerica|type=transcript|length=1725bp
GTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaaaattgtc
TGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAGAAAGCGG
TCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATCCAATTGTTT
GATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGA
AAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGC
GAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTAT
CCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTT
AGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCC
ATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATC
ATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCT
CGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTTTAGGATATA
TTCCCCTCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAAT
TTGATTTCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTAT
CTTACCACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCT
TACTATCTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAAT
GCATTTTTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAG
CCTTAATGCTAACGCTGCAGCCTTCATCTTCAGATATACACCGATCCTTG
TGAATCACGTGATCAGTTCAACCTCATACGTCATCTCGCTCTACGTCAGT
CTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGCAAATCAA
GTTGTCCAATAAAATCTCTCAATAAATGAATAACTGTTTTACCGTAtaaa
tttttgtatatattttcaaagaattatggataataacttttttttaaaca
caTTGGATATTTTTAAACACATTTTGGATTATTTGACACGTATATATTTT
ATTGATGAGAACACGATGAGAACAATTTTTGATCCTTAAATCGGTCAGAT
AGAACACACATGAAACAAGACGAAAAGGACGACGGAAACTTTACAATGGA
CTTCTTCACGATAACGACACAGTATCAAAATTTGCGAGGAACATTACCAG
ACAAAACTACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAATA
TGCAAAAACGCGGCGATTCNCGAGGAACATTACCAGACAAAACTACTAAG
ACAAAGCAGAAATCAATAGACGAACATACGGTAATGTGCAAAAACGCGGC
GATTCACTGGGAACATTATATACCAGACATATTGAATAAATCTTGACTCC
TTGACTGTTTAATGCATATAATCGAGATCAAAATAATTTGGTGGAACGGA
TCGACAGAGACGTTAAGCTAAAGAATAAAGAAACAGAAAGATTTGTCAGG
ATATTCACGAAGGGCTAAAAATCAAACAGCAAACAAGATTTGAATCCTGG
TTGCTCTATGACACTAACTTTTGGTGAAACGGGTTTGCTGGAATAGGCGA
AAGGATAAAAATTGTAATTCAGAAGGGAAAGAGTTCTCACCAGAAAGGAG
CTTGTATATTGTATTGTAAATAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_308:60946..63927+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058190 ID=TCONS_00058190|Name=TCONS_00058190|organism=Clytia hemisphaerica|type=transcript|length=2982bp|location=Sequence derived from alignment at scaffold_308:60946..63927+ (Clytia hemisphaerica)
GTTCCAATTATGATTAATTATAAACTATCCaagaaattaacaaaattgtc
TGATGCACTCAGTCAACCTTTCACTGTTGTCTTAACTTTGAAGAAAGCGG
TCATCATCTGGATATTGGCAATATCGTTTTCCATTTTAATGTATATGAAT
TATGATTATTGCTTCGAAATCATCGGGTAAGTTAAACTCCTCTAATAATC
TTAAAATGTTATCCTCTTCCTCCCAATTTTAGTTTTGAGAGCGGCGTCGA
CACAACGTGGTAAGCCCTCCTTCCAGATGCCTACCCCAAACTTATATAAG
ACAATGACATTAGATTCTATTGAAAAGAATTTATCATTatattatctttt
ttatttattaaatagaatttattattttattattgtttAGCCAATTGTTT
GATTTCTTCGGACAATTTTGGGAACCTGAGTACAAGCCAACGACCCTGGA
AAGTGCAGTGAGCTGGTTTGGAATCGGTAACCAAGTCTTCAAAGCTAAGC
GAGAACCTATTTTCGTTAAAGTTTGGATGGACTGGCTATCTACCAACTAT
CCTATAACCTCAAAAGTATTGGTATTCAGCAGCGTGGTATTGTCACCTTT
AGCCTATATTCGTATGCCCATAATTGTCGCTGCCATCATTTTCCTGGTCC
ATATTATTGGTTCATTGACAACAGCTATACTAAGTACAATCCGAAATATC
ATTGGACAATCTTCATGGAAATCTATTGTTTTAACCATGACGTCATCGCT
CGCAATAGTACTGTACATCAATTATGGTCATCCAACAATTTTAGGGTATG
TCATTGCCAACAATGCTTTCTGATACatgctaaatatttttacaagcaTT
TTGGTAAATAAACGTATATATAAGGGAATGAACGAACCGGAAGGAATAGC
TAGCTCATTAGGTTTGGCGTGCGCTTCACCATACAAGAGGGTCCCCATAC
AAAGGGGGCAATTGTCAATCATCAACGTTCTCCTTGGAAGataatgaatg
aaaaagtttcttCTCGATCGGTCTCAAGGAGTTTGATGCACAGAAGTTAT
TAGTTACTAAATGATTGCTGAGAGCAGGCCCGAATCAGTGATAACTCAAC
TGCATAGTTAGCGCAAGCTACAACTTGGAATTTGGTGTTTGCTAGTCAta
caaacaaaaatataaaataatatcAACGTCCATCAAACCTCTAGATGTGA
GACAGTAGCCCGATAATTGAATTCTCATTTCTATTTTAGATATATTCCCC
TCCTACTACAAGGATCAAATGTAGTCATCAAACTTGGCATTAATTTGATT
TCAAACATCATTGAAGTATACGTTAGCTTCTTCATGGCAATTATCTTACC
ACCGCTGATCATTATGTCTATTGCTGACTTCCAAGCTGGAATCTTACTAT
CTAAAGTCCTCGGTATGATTTCAAGAAACGTGACAAAGAGAAATGCATTT
TTGGTTTTGAGGGTTTCAGTGTTGGTTTTCTGCTGTACAATCAGCCTTAA
TGCTAACGCTGCAGCCTTCATCTTCAGGTAAGGGCTTTCTACCAATTTAC
TTTGCTTTCTTTGACAGCTGATGGAAAAGCGTATGAATCCCTACCCAAAT
CAGACAAGATTAATTAACTCAaacctctactattcgaatctttcaaataa
ttcgaacaaaaatattggtCGTCTCAGCTAGAAAGTAGTATAtaatactc
tctgtaatttgGATCCTTTTCtatttcgaagaaaattcttggttccttcc
cagctggcacacaacgtcgtttcaacgttcatctaacgttagatggacgt
tgaaacaacgttgtgtgccagctgggttaaaGATCGAATTGgaaagagtc
aactgtattttatTTGAAGTTATAAGCTGCTATtggttgtgaacattaga
tggacgttgaaacaacgttgtgtgccagctgggttaaagatcgaattgga
gagagtcaactgtattttatTTGAAGTTATAAGCTGCTATTGGTTTTGGG
AATCTCATCCAATTTATTTTCTCCTTATAGATATANTTATAAGCTGCTCT
TGGTTTTGGGAATCTCATCCAATTTATTTTCTCCTTATAGATATACACCG
ATCCTTGTGAATCACGTGATCAGTTCAACCTCATACGTCATCTCGCTCTA
CGTCAGTCTCCTTTTCGCTGTCATTCTACCGCTGTTCGTCATTTGGGCGC
AAATCAAGTTGTCCAATAAAATCTCTCAATAAATGAATAACTGTTTTACC
GTAtaaatttttgtatatattttcaaagaattatggataataactttttt
ttaaacacaTTGGATATTTTTAAACACATTTTGGATTATTTGACACGTAT
ATATTTTATTGATGAGAACACGATGAGAACAATTTTTGATCCTTAAATCG
GTCAGATAGAACACACATGAAACAAGACGAAAAGGACGACGGAAACTTTA
CAATGGACTTCTTCACGATAACGACACAGTATCAAAATTTGCGAGGAACA
TTACCAGACAAAACTACTAAGACAAAGCAGAAATCAATAGACGAACATAC
GGTAATATGCAAAAACGCGGCGATTCNCGAGGAACATTACCAGACAAAAC
TACTAAGACAAAGCAGAAATCAATAGACGAACATACGGTAATGTGCAAAA
ACGCGGCGATTCACTGGGAACATTATATACCAGACATATTGAATAAATCT
TGACTCCTTGACTGTTTAATGCATATAATCGAGATCAAAATAATTTGGTG
GAACGGATCGACAGAGACGTTAAGCTAAAGAATAAAGAAACAGAAAGATT
TGTCAGGATATTCACGAAGGGCTAAAAATCAAACAGCAAACAAGATTTGA
ATCCTGGTTGCTCTATGACACTAACTTTTGGTGAAACGGGTTTGCTGGAA
TAGGCGAAAGGATAAAAATTGTAATTCAGAAGGGAAAGAGTTCTCACCAG
AAAGGAGCTTGTATATTGTATTGTAAATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036669XLOC_036669Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058190-exon-scaffold_308-1491911889:60946..61085TCONS_00058190-exon-scaffold_308-1491911889:60946..61085Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1510915933:60946..61085TCONS_00058190-exon-scaffold_308-1510915933:60946..61085Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1575043694:60946..61085TCONS_00058190-exon-scaffold_308-1575043694:60946..61085Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1491911889:61336..61740TCONS_00058190-exon-scaffold_308-1491911889:61336..61740Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1510915933:61336..61740TCONS_00058190-exon-scaffold_308-1510915933:61336..61740Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1575043694:61336..61740TCONS_00058190-exon-scaffold_308-1575043694:61336..61740Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1491911889:62185..62472TCONS_00058190-exon-scaffold_308-1491911889:62185..62472Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1510915933:62185..62472TCONS_00058190-exon-scaffold_308-1510915933:62185..62472Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1575043694:62185..62472TCONS_00058190-exon-scaffold_308-1575043694:62185..62472Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1491911889:63036..63927TCONS_00058190-exon-scaffold_308-1491911889:63036..63927Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1510915933:63036..63927TCONS_00058190-exon-scaffold_308-1510915933:63036..63927Clytia hemisphaericaexon
TCONS_00058190-exon-scaffold_308-1575043694:63036..63927TCONS_00058190-exon-scaffold_308-1575043694:63036..63927Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_308supercontigscaffold_308:60946..63927 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0234022	0.0228208	0.0794915	0	0.0631184	0.0249385	0	0	0.0986029	0.146563	0	0.0935144	0.404666	0.0353263	0	0.0142606	0.0175679	0	0	0	0	0	0	0.0243946	0.607684	0	0	0.0342463	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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