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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058172 ID=TCONS_00058172|Name=TCONS_00058172|organism=Clytia hemisphaerica|type=transcript|length=1068bp
GAATCCTGGGTATTTTTTCTTGACCTAGTCAAGGCTTTCGATCGCGTACC
CAGGCAGTTACAATGGCTTATCTTAGAGAAATTTGGAGTTCCACCTAAAT
TAACCAGTCTTCTTAAATCCTTACATGAAAACTTCACCGTTAAATTCACC
GTAGACGAAGTCACGCATATAATGTCATGTACCATTGGCGTAAAGCAAGG
GGATATTCTCGGCCCCATACTGTTCACGTTTTTTCTTGCAGCTGTAATGA
TCACCTGGAGAGCAACCACCAGCCTACCATTGTGCATTTTTAGATCAAAA
CAGGATACCAAAATGACCGGTCGGAGCTACCGTGCATACGGCGAGGAGTA
TGAATTTCAGGACTCTGAATATGCCGACGACACAGCCCTCGTTTTCGACT
CAAGAGAAGAGGCTAGTGTTGGTATACCGCTCTGTATGGCCCATTTCGAC
TGTTTTGGAATGGAGATCCATTCGGGGCCACCTGATTCGAAATCTGTCGT
TCTTTTCTGCTCGAAACCACCATGTATGTATGACGATCCTGCAACCTTTG
ATCAAGCTGACCTATCGAATATAGTTTTTGGTGACAGATTTATTCCTGTT
GAGGGAGAGTATATTTATCTTGGTAGCGTCATAAGTTCCGATTCCTCAGA
TGATCTTGATGTTGATCGTAGAATACAGAAAGCGtgtaattcattatttt
cccgcACTAAGATAAAGCTTAGTGTCAAAGCAAAAGTTTATCAAGCATTT
ATTCTACCCATCTCATTATATGGTGTTGAGTGTTGGAGCTTGACGGAAAA
GCTTCTTTATAAATTGAGAGCATTTCACCATCGGTGTGTAAGAAGTATTT
GTCGTGTTACTTTACTCGATCNNNNNNNNATAAATTGAGAGCATTTCACC
ATCGGTGTGTAAGAAGTATTTGTCGTGTTACTTTACTCGATCGTAAACGT
ACATCTGATCTTCTCGATAAACTTTCTATGGAATCGATAGACACCTACAT
TTGTCGTCAACAGCTCAGATGGGCTGGACATGTAATGCGCATGCCTTGGA
ATCGCCTTCCACGGAAAA Run BLAST on NCBI protein sequence of TCONS_00058172-protein >TCONS_00058172-protein ID=TCONS_00058172-protein|Name=TCONS_00058172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
ESWVFFLDLVKAFDRVPRQLQWLILEKFGVPPKLTSLLKSLHENFTVKFT
VDEVTHIMSCTIGVKQGDILGPILFTFFLAAVMITWRATTSLPLCIFRSK
QDTKMTGRSYRAYGEEYEFQDSEYADDTALVFDSREEASVGIPLCMAHFD
CFGMEIHSGPPDSKSVVLFCSKPPCMYDDPATFDQADLSNIVFGDRFIPV
EGEYIYLGSVISSDSSDDLDVDRRIQKACNSLFSRTKIKLSVKAKVYQAF
ILPISLYGVECWSLTEKLLYKLRAFHHRCVRSICRVTLLDXXXIN Run BLAST on NCBI transcript from alignment at scaffold_307:144..1211 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058172 ID=TCONS_00058172|Name=TCONS_00058172|organism=Clytia hemisphaerica|type=transcript|length=1068bp|location=Sequence derived from alignment at scaffold_307:144..1211 (Clytia hemisphaerica)
TTTTCCGTGGAAGGCGATTCCAAGGCATGCGCATTACATGTCCAGCCCAT
CTGAGCTGTTGACGACAAATGTAGGTGTCTATCGATTCCATAGAAAGTTT
ATCGAGAAGATCAGATGTACGTTTACGATCGAGTAAAGTAACACGACAAA
TACTTCTTACACACCGATGGTGAAATGCTCTCAATTTATNNNNNNNNGAT
CGAGTAAAGTAACACGACAAATACTTCTTACACACCGATGGTGAAATGCT
CTCAATTTATAAAGAAGCTTTTCCGTCAAGCTCCAACACTCAACACCATA
TAATGAGATGGGTAGAATAAATGCTTGATAAACTTTTGCTTTGACACTAA
GCTTTATCTTAGTgcgggaaaataatgaattacaCGCTTTCTGTATTCTA
CGATCAACATCAAGATCATCTGAGGAATCGGAACTTATGACGCTACCAAG
ATAAATATACTCTCCCTCAACAGGAATAAATCTGTCACCAAAAACTATAT
TCGATAGGTCAGCTTGATCAAAGGTTGCAGGATCGTCATACATACATGGT
GGTTTCGAGCAGAAAAGAACGACAGATTTCGAATCAGGTGGCCCCGAATG
GATCTCCATTCCAAAACAGTCGAAATGGGCCATACAGAGCGGTATACCAA
CACTAGCCTCTTCTCTTGAGTCGAAAACGAGGGCTGTGTCGTCGGCATAT
TCAGAGTCCTGAAATTCATACTCCTCGCCGTATGCACGGTAGCTCCGACC
GGTCATTTTGGTATCCTGTTTTGATCTAAAAATGCACAATGGTAGGCTGG
TGGTTGCTCTCCAGGTGATCATTACAGCTGCAAGAAAAAACGTGAACAGT
ATGGGGCCGAGAATATCCCCTTGCTTTACGCCAATGGTACATGACATTAT
ATGCGTGACTTCGTCTACGGTGAATTTAACGGTGAAGTTTTCATGTAAGG
ATTTAAGAAGACTGGTTAATTTAGGTGGAACTCCAAATTTCTCTAAGATA
AGCCATTGTAACTGCCTGGGTACGCGATCGAAAGCCTTGACTAGGTCAAG
AAAAAATACCCAGGATTC Coding sequence (CDS) from alignment at scaffold_307:144..1211 >TCONS_00058172 ID=TCONS_00058172|Name=TCONS_00058172|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_307:144..1211 (Clytia hemisphaerica)
TCAATTTATNNNNNNNNGATCGAGTAAAGTAACACGACAAATACTTCTTA
CACACCGATGGTGAAATGCTCTCAATTTATAAAGAAGCTTTTCCGTCAAG
CTCCAACACTCAACACCATATAATGAGATGGGTAGAATAAATGCTTGATA
AACTTTTGCTTTGACACTAAGCTTTATCTTAGTgcgggaaaataatgaat
tacaCGCTTTCTGTATTCTACGATCAACATCAAGATCATCTGAGGAATCG
GAACTTATGACGCTACCAAGATAAATATACTCTCCCTCAACAGGAATAAA
TCTGTCACCAAAAACTATATTCGATAGGTCAGCTTGATCAAAGGTTGCAG
GATCGTCATACATACATGGTGGTTTCGAGCAGAAAAGAACGACAGATTTC
GAATCAGGTGGCCCCGAATGGATCTCCATTCCAAAACAGTCGAAATGGGC
CATACAGAGCGGTATACCAACACTAGCCTCTTCTCTTGAGTCGAAAACGA
GGGCTGTGTCGTCGGCATATTCAGAGTCCTGAAATTCATACTCCTCGCCG
TATGCACGGTAGCTCCGACCGGTCATTTTGGTATCCTGTTTTGATCTAAA
AATGCACAATGGTAGGCTGGTGGTTGCTCTCCAGGTGATCATTACAGCTG
CAAGAAAAAACGTGAACAGTATGGGGCCGAGAATATCCCCTTGCTTTACG
CCAATGGTACATGACATTATATGCGTGACTTCGTCTACGGTGAATTTAAC
GGTGAAGTTTTCATGTAAGGATTTAAGAAGACTGGTTAATTTAGGTGGAA
CTCCAAATTTCTCTAAGATAAGCCATTGTAACTGCCTGGGTACGCGATCG
AAAGCCTTGACTAGGTCAAGAAAAAATACCCAGGATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058172-exon-scaffold_307-1491911889:144..1211 | TCONS_00058172-exon-scaffold_307-1491911889:144..1211 | Clytia hemisphaerica | exon |
| TCONS_00058172-exon-scaffold_307-1510915933:144..1211 | TCONS_00058172-exon-scaffold_307-1510915933:144..1211 | Clytia hemisphaerica | exon |
| TCONS_00058172-exon-scaffold_307-1575043694:144..1211 | TCONS_00058172-exon-scaffold_307-1575043694:144..1211 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:144..1211 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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