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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058171 ID=TCONS_00058171|Name=TCONS_00058171|organism=Clytia hemisphaerica|type=transcript|length=1983bp
GCATTGTAGAGAAAATAGTAGAAAATATCCgaaatacatttttttctatA
ACGTTATTTAAAGATATCAGATGAAGGAAATCAGTCATGCACCTTTATCT
TTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATGGTACGTGGgcgaag
aaaaacaacaaacattAACGAGTATTGTTACAGAGGATGCTTCAAAACCT
GTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAATGTCGAAGgaaaca
gaaaaaaagtttttttgttaaagCGAAAAACGAATGTTTTTGCGTGGAGG
AAGAAAACAGAGGATTTGGAACAGACCAAGAATCATCGATTGAAGGAATG
CTCTACAAAGAACACATGgAATGCTTCGCAACTTCATGCAAAGAACTCAA
AAAGATTTGTCCAGATTGCGAGTCAAGGATTTACACGTTGGACTTTGATG
AACCGACGAAGGTGTTTTGTGATATGGAGACTGACGGGGGAGGTTGGTTG
GCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAATCATACCTTGG
CAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCAAAACGTGC
AAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTCTACAACAA
TACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCTGGGCACGG
TCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTCTTATTTGC
TGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCATCACGATTT
TTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAACACACAAA
AACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTTCTACATAG
CTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATTATTCCGGT
ACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATTGAAGCACCACCATC
AATGATGATACTTACAATCTTGTTATGAAACTCGTACAGAGGCAGGTTTC
CTCAAATCTAAAGCTTGACCTCAGAATGAATAAAAGGAATGCGTAGCCTG
TTTCAATTTAAAGTACATGGACATATACACAAGTTTGATAACACTGATAT
GTCTTTCCTTCGTTTTTCGAGTAAAGACACACAGATAGCGTAACGTTCAC
TCAGCCTGTTCGGTAAAATACACCCCTCTAAAACGCAAAGACGGGGTAAC
TCTTGAACGGGACTTTTATTCACGACACTTATCCCAAAAACAATTATCCT
AtatcaaaaacaatttaaaacctTAGAAAACTGGTTTGAAACGACTACTA
TGCTGTGAGTCCTGGTAAATTTCAGGAAATCGGAAGATTTGTAAGAAATG
TAACAATGAAATCTCAGAATTATGCTGTGCTTTCTTGGTAATACGATTGA
CAATAACTATATGTCATGTAGTTTAGGAAAAGTAAACTCAACATTATATG
TCCATTAGAAAAGTCTTCATGTTTTTCTTCTTGggttttcattttaattt
caaaaacatggaatttaagattttaaagccTTCGAATCATCCacttttaa
atagtttttttcCAGCACAGTCCAATGAGGTACTATTGTTAATATTAATA
ATtctattttctaaaatgtttggACTGCTAATTTCTTTGGAACAGACTTT
TTAAATCTTCGCTGAAAGAAATAAACATTACGAATATTATTTGTCTTTGT
ATTTGAATATGtaagcaaaaaaattatcttaaaaatttcattcttaTAAA
TAGCGTTGACATTAATCAGATTATTATTATAAATGCCAGATCAACATATA
TTAATAACTGTATACCCTTAGGTTCCCGATAAACGGTTCCCTCGCTTGTT
AAATTATCcaccggaccttattaggacctcaccatttattaatttttgaa
gaatattttcagcctTCAAAGAAAAGGTGCTTT Run BLAST on NCBI protein sequence of TCONS_00058171-protein >TCONS_00058171-protein ID=TCONS_00058171-protein|Name=TCONS_00058171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MHLYLLLSKFVFVYSQWYVGEEKQQTLTSIVTEDASKPVPAQSPIQCVLK
CRRKQKKSFFVKAKNECFCVEEENRGFGTDQESSIEGMLYKEHMECFATS
CKELKKICPDCESRIYTLDFDEPTKVFCDMETDGGGWLAIGKIVFDDVSL
QSYLGNEVINKPGKISQLQNVQSGQFLLETTALSTLQQYIGFTEFRIKCF
KPGHGRTLSVVLSGIQIMSYLLDPLNTVYTGHCGASRFLPDDSSVIGATN
CQHTKTGYVGHTEIYSLPFYIAYHDVWLYHFRCDDYSGTLGTWEFYLR Run BLAST on NCBI transcript from alignment at scaffold_307:282276..285364- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058171 ID=TCONS_00058171|Name=TCONS_00058171|organism=Clytia hemisphaerica|type=transcript|length=3089bp|location=Sequence derived from alignment at scaffold_307:282276..285364- (Clytia hemisphaerica)
GCATTGTAGAGAAAATAGTAGAAAATATCCGAAATACATTTTTTTCTATA
ACGTTATTTAAAGATATCAGATGAAGGAAATCAGTCATGCACCTTTATCT
TTTATTGAGCAAGTTTGTGTTTGTTTATTCTCAATGGTACGTGGGCGAAG
AAAAACAACAAACATTAACGAGTATTGTTACAGAGGATGCTTCAAAACCT
GTTCCTGCACAATCCCCAATTCAATGTGTTTTAAAATGTCGAAGGAAACA
GAAAAAAAGTTTTTTTGTTAAAGCGAAAAACGAATGTTTTTGCGTGGAGG
AAGAAAACAGAGGATTTGGAACAGACCAAGAATCATCGATTGAAGGAATG
CTCTACAAAGAACACATGGTAAATTAAATAAGGTGTCCTGATTGGGCTTT
TCCAGAAAAAAATTGAATATGGAGGTGAAGGATATAACGTTTTTTGAAAA
TTTACCTCCCGGACACTGTTAATTTTGACCCCCCGGACGAGCATCAGTCG
ACCCCCCGGACATTCAAAATTGCTCCCAAAACAAGGCAAATTTTGCAGAG
TTGTCACTACCCCCCGGACAAAATATCCAATATATTCTCCAACCCCCCAT
GTACAAAAGAGCCCATTAAGGTTTCATTCCCAAAACTTTTGATTTCTTAT
CCTCTTACGAGCTATTTTGCTAATTATCATGGATAAGATAATTCAGAGCA
AAATGATGATCCTGGAAAGGCTCGTGGAATAAGAATAGAACAAGGAAGAT
CAATAATTTGTATAAACATCAAATTAAGGTTAAAGATGCAGCCCCCTGGT
ATTGTAATGACACATTCTAAAAAAGTCGGAAATAGATTTTTGATTGATGG
AATCTAGACTATACTTAAAAGTTTGGCCAAAGAGGTCGCTGAAAATAAGT
CAAAATTCCAGGGGTTCTAAAAAAGTCCTCGACATCCTTATTTCTATTTT
TTTAAGGAATGCTTCGCAACTTCATGCAAAGAACTCAAAAAGATTTGTCC
AGATTGCGAGTCAAGGATTTACACGTTGGACTTTGATGAACCGACGAAGG
TGTTTTGTGATATGGAGACTGACGGGGGTAAGAATAAAAAACTAAAATAC
TACGTGTCATTAAAGAGAACAATTAAAATCACGTGTCAAAAACAAACTTG
TAAAAAAATTGAAACAATCGAAATCCGCCATGGGATGCCATATTTGTTTT
TATTTTTTATATATTTTGATTTTGTATCCCGCTGCATACGGTTTGTTTAC
AAATTTCGTCAGTACTTTTGTGTCCCTTTAAGGGGATGCACAGTTATTAT
TTATTTAAAAAAAGTTTCACACGAGATGCTTAAAATACACATAAATACAT
TCATTTCCACTTGATACATATCAAAAATCATGTCAGTATTAATTTTTGAG
TTCCTTATAACATCATACACTTTTGTAGTCAGTTTCACCCATTTGTTAAG
CCTTAAAACACTTTTTCAGTCCCCCCTTAAAATGAAATTTTGCGCTTGAA
GAAANGTCAGAAACCATGTTCAATGTTAAATCTCACCAAAATTAATACCT
TTAAAATAGCAATCAATCATTTTTTGACCGAATTCTTGCCCACAGGAGGT
TGGTTGGCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAATCATA
CCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCAAA
ACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTCTA
CAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCTGG
GCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTCTT
ATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCATCA
CGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAACA
CACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTTCT
ACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATTAT
TCCGGTACCTTAGGAACTTGGGAATTTTATCTTCGTTAAATTGAAGCACC
ACCATCAATGATGATACTTACAATCTTGTTATGAAACTCGTACAGAGGCA
GGTTTCCTCAAATCTAAAGCTTGACCTCAGAATGAATAAAAGGAATGCGT
AGCCTGTTTCAATTTAAAGTACATGGACATATACACAAGTTTGATAACAC
TGATATGTCTTTCCTTCGTTTTTCGAGTAAAGACACACAGATAGCGTAAC
GTTCACTCAGCCTGTTCGGTAAAATACACCCCTCTAAAACGCAAAGACGG
GGTAACTCTTGAACGGGACTTTTATTCACGACACTTATCCCAAAAACAAT
TATCCTATATCAAAAACAATTTAAAACCTTAGAAAACTGGTTTGAAACGA
CTACTATGCTGTGAGTCCTGGTAAATTTCAGGAAATCGGAAGATTTGTAA
GAAATGTAACAATGAAATCTCAGAATTATGCTGTGCTTTCTTGGTAATAC
GATTGACAATAACTATATGTCATGTAGTTTAGGAAAAGTAAACTCAACAT
TATATGTCCATTAGAAAAGTCTTCATGTTTTTCTTCTTGGGTTTTCATTT
TAATTTCAAAAACATGGAATTTAAGATTTTAAAGCCTTCGAATCATCCAC
TTTTAAATAGTTTTTTTCCAGCACAGTCCAATGAGGTACTATTGTTAATA
TTAATAATTCTATTTTCTAAAATGTTTGGACTGCTAATTTCTTTGGAACA
GACTTTTTAAATCTTCGCTGAAAGAAATAAACATTACGAATATTATTTGT
CTTTGTATTTGAATATGTAAGCAAAAAAATTATCTTAAAAATTTCATTCT
TATAAATAGCGTTGACATTAATCAGATTATTATTATAAATGCCAGATCAA
CATATATTAATAACTGTATACCCTTAGGTTCCCGATAAACGGTTCCCTCG
CTTGTTAAATTATCCACCGGACCTTATTAGGACCTCACCATTTATTAATT
TTTGAAGAATATTTTCAGCCTTCAAAGAAAAGGTGCTTT Coding sequence (CDS) from alignment at scaffold_307:282276..285364- >TCONS_00058171 ID=TCONS_00058171|Name=TCONS_00058171|organism=Clytia hemisphaerica|type=CDS|length=2691bp|location=Sequence derived from alignment at scaffold_307:282276..285364- (Clytia hemisphaerica)
GAGGTTGGTTGGCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAA
TCATACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCT
TCAAAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAA
CTCTACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAA
CCTGGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAAT
GTCTTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTG
CATCACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGT
CAACACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACC
GTTCTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATG
ATTATTCCGGTACCTTAGGAACTTGGGAATTTTATCTTCGTTAAGAATGC
TTCGCAACTTCATGCAAAGAACTCAAAAAGATTTGTCCAGATTGCGAGTC
AAGGATTTACACGTTGGACTTTGATGAACCGACGAAGGTGTTTTGTGATA
TGGAGACTGACGGGGATGCACCTTTATCTTTTATTGAGCAAGTTTGTGTT
TGTTTATTCTCAATGGTACGTGGGCGAAGAAAAACAACAAACATTAACGA
GTATTGTTACAGAGGATGCTTCAAAACCTGTTCCTGCACAATCCCCAATT
CAATGTGTTTTAAAATGTCGAAGGAAACAGAAAAAAAGTTTTTTTGTTAA
AGCGAAAAACGAATGTTTTTGCGTGGAGGAAGAAAACAGAGGATTTGGAA
CAGACCAAGAATCATCGATTGAAGGAATGCTCTACAAAGAACACATGGAG
GTTGGTTGGCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAATCA
TACCTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCA
AAACGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTC
TACAACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCT
GGGCACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTC
TTATTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCAT
CACGATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAA
CACACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTT
CTACATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATT
ATTCCGGTACCTTAGGAACTTGGGAATTTTATCTTCGTTAAGAATGCTTC
GCAACTTCATGCAAAGAACTCAAAAAGATTTGTCCAGATTGCGAGTCAAG
GATTTACACGTTGGACTTTGATGAACCGACGAAGGTGTTTTGTGATATGG
AGACTGACGGGGATGCACCTTTATCTTTTATTGAGCAAGTTTGTGTTTGT
TTATTCTCAATGGTACGTGGGCGAAGAAAAACAACAAACATTAACGAGTA
TTGTTACAGAGGATGCTTCAAAACCTGTTCCTGCACAATCCCCAATTCAA
TGTGTTTTAAAATGTCGAAGGAAACAGAAAAAAAGTTTTTTTGTTAAAGC
GAAAAACGAATGTTTTTGCGTGGAGGAAGAAAACAGAGGATTTGGAACAG
ACCAAGAATCATCGATTGAAGGAATGCTCTACAAAGAACACATGGAGGTT
GGTTGGCTATAGGCAAAATTGTCTTTGATGACGTGAGTCTCCAATCATAC
CTTGGCAATGAAGTAATCAATAAACCAGGCAAGATATCTCAGCTTCAAAA
CGTGCAAAGCGGTCAATTTTTATTGGAAACAACAGCTCTGTCAACTCTAC
AACAATACATCGGTTTTACAGAATTCAGAATCAAATGCTTCAAACCTGGG
CACGGTCGTACACTTAGTGTGGTTTTATCTGGAATCCAAATAATGTCTTA
TTTGCTGGACCCTCTGAATACAGTTTACACCGGCCATTGCGGTGCATCAC
GATTTTTACCTGACGATAGCTCAGTCATCGGTGCAACGAATTGTCAACAC
ACAAAAACAGGATACGTGGGACATACTGAAATCTACTCATTACCGTTCTA
CATAGCTTACCATGACGTTTGGTTGTATCATTTTAGATGTGATGATTATT
CCGGTACCTTAGGAACTTGGGAATTTTATCTTCGTTAAGAATGCTTCGCA
ACTTCATGCAAAGAACTCAAAAAGATTTGTCCAGATTGCGAGTCAAGGAT
TTACACGTTGGACTTTGATGAACCGACGAAGGTGTTTTGTGATATGGAGA
CTGACGGGGATGCACCTTTATCTTTTATTGAGCAAGTTTGTGTTTGTTTA
TTCTCAATGGTACGTGGGCGAAGAAAAACAACAAACATTAACGAGTATTG
TTACAGAGGATGCTTCAAAACCTGTTCCTGCACAATCCCCAATTCAATGT
GTTTTAAAATGTCGAAGGAAACAGAAAAAAAGTTTTTTTGTTAAAGCGAA
AAACGAATGTTTTTGCGTGGAGGAAGAAAACAGAGGATTTGGAACAGACC
AAGAATCATCGATTGAAGGAATGCTCTACAAAGAACACATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00058171-exon-scaffold_307-1575043694:284997..285364 | TCONS_00058171-exon-scaffold_307-1575043694:284997..285364 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1575043694:284288..284408 | TCONS_00058171-exon-scaffold_307-1575043694:284288..284408 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1575043694:282276..283769 | TCONS_00058171-exon-scaffold_307-1575043694:282276..283769 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1510915933:284997..285364 | TCONS_00058171-exon-scaffold_307-1510915933:284997..285364 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1510915933:284288..284408 | TCONS_00058171-exon-scaffold_307-1510915933:284288..284408 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1510915933:282276..283769 | TCONS_00058171-exon-scaffold_307-1510915933:282276..283769 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1491911889:284997..285364 | TCONS_00058171-exon-scaffold_307-1491911889:284997..285364 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1491911889:284288..284408 | TCONS_00058171-exon-scaffold_307-1491911889:284288..284408 | Clytia hemisphaerica | exon |
| TCONS_00058171-exon-scaffold_307-1491911889:282276..283769 | TCONS_00058171-exon-scaffold_307-1491911889:282276..283769 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_307 | supercontig | scaffold_307:282276..285364 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR002181 | Fibrinogen_a/b/g_C_dom |
| IPR014716 | Fibrinogen_a/b/g_C_1 |
Blast
The following BLAST results are available for this feature:
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